.alias

### Command alias
alias ls='/bin/ls -FG'
alias ll="ls -lh"
alias la="ls -lhGgoA"
alias lp='ls -lrth'
alias wcl='wc -l'
alias wcc="awk -F'\t' '{print NF; exit}'"

alias ..="cd .."
alias ...="cd ../.."
alias ....="cd ../../.."
alias .....="cd ../../../.."

alias qs="qstat"
alias tf="tail -f"
alias grep='/usr/bin/grep --color=auto'
alias grep='/usr/local/bin/ggrep --color=auto' # requires brew install grep to install GNU grep
alias mkdir='mkdir -p' # make all necessary parent directories
alias lS='less -S'
alias l="(sed ':x s/\(^\|\t\)\t/\1 \t/; t x' | column -ts$'\t' | less -SFX)"
alias where='readlink'

### Software alias
alias subl='/Applications/Sublime\ Text\ 2.app/Contents/SharedSupport/bin/subl'
alias R='R --no-save --no-restore-data'

### Alias for cluster access
#alias s2="ssh jonssonp@saba2.cbio.mskcc.org"
#alias hal="ssh jonssonp@hal.cbio.mskcc.org"
alias luna="ssh jonssonp@luna.cbio.mskcc.org"
#alias s01="ssh jonssonp@s01.cbio.mskcc.org"
alias sel="ssh jonssonp@selene.cbio.mskcc.org"
alias juno="ssh jonssonp@juno.mskcc.org"