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cannot load rtracklayer successfully #86

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lexie-lee opened this issue Mar 29, 2023 · 0 comments
Open

cannot load rtracklayer successfully #86

lexie-lee opened this issue Mar 29, 2023 · 0 comments

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@lexie-lee
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I reached some problems when I install rtracklayer on macOS. Even I tried re-install rtracklayer for a lot of times but it still cannot be loaded successfully.

This is the error information:

library(rtracklayer)
Error: package or namespace load failed for ‘rtracklayer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Library/Frameworks/R.framework/Versions/4.2/Resources/library/rtracklayer/libs/rtracklayer.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.2/Resources/library/rtracklayer/libs/rtracklayer.so, 6): Symbol not found: ___darwin_check_fd_set_overflow
  Referenced from: /Library/Frameworks/R.framework/Versions/4.2/Resources/library/rtracklayer/libs/rtracklayer.so
  Expected in: /usr/lib/libSystem.B.dylib
 in /Library/Frameworks/R.framework/Versions/4.2/Resources/library/rtracklayer/libs/rtracklayer.so

this is other informations:

`sessionInfo()
R version 4.2.2 (2022-10-31)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Mojave 10.14.6

Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats4 stats graphics grDevices utils datasets
[7] methods base

other attached packages:
[1] GenomicRanges_1.50.2 GenomeInfoDb_1.34.9
[3] IRanges_2.32.0 S4Vectors_0.36.2
[5] BiocGenerics_0.44.0 BiocManager_1.30.20

loaded via a namespace (and not attached):
[1] rstudioapi_0.14 XVector_0.38.0
[3] GenomicAlignments_1.34.1 zlibbioc_1.44.0
[5] BiocParallel_1.32.6 lattice_0.20-45
[7] rjson_0.2.21 tools_4.2.2
[9] SummarizedExperiment_1.28.0 parallel_4.2.2
[11] grid_4.2.2 Biobase_2.58.0
[13] matrixStats_0.63.0 yaml_2.3.7
[15] crayon_1.5.2 BiocIO_1.8.0
[17] Matrix_1.5-3 GenomeInfoDbData_1.2.9
[19] restfulr_0.0.15 bitops_1.0-7
[21] codetools_0.2-19 RCurl_1.98-1.12
[23] DelayedArray_0.24.0 compiler_4.2.2
[25] MatrixGenerics_1.10.0 Biostrings_2.66.0
[27] Rsamtools_2.14.0 XML_3.99-0.14 `

I also installed Xcode, but it didn't work either. Does anybody knows how to solve this?

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