Data preprocessing

Volume size

Population average

Before make a population average, all volumes must of the same dimensions. The following will pad the target-associated volumes. With each dimension padded to be the largest extent of that dimensions across all the volumes.

To pad all volumes (in place) to the same size use the following (see Padding)

$ utilities/pad_volumes.py -i target_dir --clobber 

Do registration of the baseline and mutants

Before running job_runner.py all the baseline, mutant and target (fixed volume, masks, labels) data must all have the same shape.

$ utilities/pad_volumes.py -i wt_dir mut_dir target_dir --clobber