diff --git a/CHANGELOG.md b/CHANGELOG.md index 240a582c0..5361415b9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,17 @@ All notable changes to Dorado will be documented in this file. +# [0.7.1] (3 June 2024) + +This release of Dorado fixes out of memory errors when using the v5 SUP model with methylation calling, resolves several bugs in `dorado correct` and adds correct handling of the `BC:Z` tag when running `demux` multiple times. + +* a9c6f59bff450d2a822ca5b64b18162bfd9b9a09 - Fetch available memory correctly for autobatch calculation with modbase models +* eb24124ba8f1a72c6730c1ce4b178f020c9d3565 - Move developer quickstart and extend installation instructions +* 45b8acc730ddbe6b438cf17153a64c084d1af2fb - Package missing CUDA Toolkit dependencies with `dorado` +* 33578e7c6d3af063389411ae6d7436ed6d0f94a1 - Update BC tag instead of adding a new one +* 580ad61ccd0f193c88202c852cbea38790c50700 - Prevent creation of CUDA stream when device is CPU +* 82078c5e0bc9545010f2405e92f93d8cff0c35db - Fix segfault with htslib pointer freeing in Windows + # [0.7.0] (21 May 2024) This release of Dorado introduces new and more accurate v5 models for improved basecalling. It also adds a new subcommand, `dorado correct`, for single-read error correction to help Nanopore based *de novo* assemblies of haploid or diploid genomes. In addition, this release contains a slew of bug fixes, stability enhancements and updates to barcode classification. diff --git a/README.md b/README.md index c83ee8284..555fbfc79 100644 --- a/README.md +++ b/README.md @@ -22,10 +22,10 @@ If you encounter any problems building or running Dorado, please [report an issu First, download the relevant installer for your platform: - - [dorado-0.7.0-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.0-linux-x64.tar.gz) - - [dorado-0.7.0-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.0-linux-arm64.tar.gz) - - [dorado-0.7.0-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.0-osx-arm64.zip) - - [dorado-0.7.0-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.0-win64.zip) + - [dorado-0.7.1-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-linux-x64.tar.gz) + - [dorado-0.7.1-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-linux-arm64.tar.gz) + - [dorado-0.7.1-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-osx-arm64.zip) + - [dorado-0.7.1-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-win64.zip) Once the relevant `.tar.gz` or `.zip` archive is downloaded, extract the archive to your desired location. diff --git a/cmake/DoradoVersion.cmake b/cmake/DoradoVersion.cmake index 8afd63d0a..efdd11d88 100644 --- a/cmake/DoradoVersion.cmake +++ b/cmake/DoradoVersion.cmake @@ -1,6 +1,6 @@ set(DORADO_VERSION_MAJOR 0) set(DORADO_VERSION_MINOR 7) -set(DORADO_VERSION_REV 0) +set(DORADO_VERSION_REV 1) find_package(Git QUIET) if(GIT_FOUND AND EXISTS "${PROJECT_SOURCE_DIR}/.git")