From 39c469b3b44b83fa79cc9d3fc07f762e4beccc3c Mon Sep 17 00:00:00 2001 From: Nelson Moore Date: Tue, 14 May 2024 12:30:15 -0400 Subject: [PATCH] refactor: separate model terms & props - move CRDC model props and terms to separate yaml files - remove old dss-classification-scheme files --- model-desc/crdc-model-props.yml | 1323 +++++ model-desc/crdc-model-terms.yml | 4564 +++++++++++++++++ model-desc/crdc-model.yml | 5887 ---------------------- model-desc/dss-classification-scheme.yml | 53 - model-desc/dss-props.yml | 579 --- model-desc/dss-terms.yml | 1409 ------ 6 files changed, 5887 insertions(+), 7928 deletions(-) create mode 100644 model-desc/crdc-model-props.yml create mode 100644 model-desc/crdc-model-terms.yml delete mode 100644 model-desc/dss-classification-scheme.yml delete mode 100644 model-desc/dss-props.yml delete mode 100644 model-desc/dss-terms.yml diff --git a/model-desc/crdc-model-props.yml b/model-desc/crdc-model-props.yml new file mode 100644 index 0000000..2ebcb5e --- /dev/null +++ b/model-desc/crdc-model-props.yml @@ -0,0 +1,1323 @@ +PropDefinitions: + Body Part Examined Anatomic Site UBERON Identifier: + Desc: The UBERON identifier of the organ or part of the body assessed. + Term: + - Code: '14883072' + Definition: The UBERON identifier of the organ or part of the body assessed. + Handle: Body Part Examined Anatomic Site UBERON Identifier + Origin: caDSR + Value: Body Part Examined Anatomic Site UBERON Identifier + Type: TBD + DICOM Modality Type: + Desc: The specific manner, characteristic, pattern or function, method or + process, or devices that created the data. + Enum: + - AR + - AS + - ASMT + - AU + - BDUS + - BI + - BMD + - CD + - CF + - CP + - CR + - CS + - CT + - CTPROTOCOL + - DD + - DF + - DG + - DM + - DMS + - DOC + - DS + - DX + - EC + - ECG + - EEG + - EMG + - EOG + - EPS + - ES + - FA + - FID + - FS + - GM + - HC + - HD + - IO + - IOL + - IVOCT + - IVUS + - KER + - KO + - LEN + - LP + - LS + - M3D + - MA + - MG + - MR + - MS + - NM + - OAM + - OCT + - OP + - OPM + - OPT + - OPTBSV + - OPTENF + - OPV + - OSS + - OT + - PLAN + - POS + - PR + - PT + - PX + - REG + - RESP + - RF + - RG + - RTDOSE + - RTIMAGE + - RTPLAN + - RTRECORD + - RTSTRUCT + - RWV + - SEG + - SM + - SMR + - SR + - SRF + - ST + - STAIN + - TEXTUREMAP + - TG + - US + - VA + - VF + - XA + - XC + Term: + - Code: '12137353' + Definition: The specific manner, characteristic, pattern or function, + method or process, or devices that created the data. + Handle: DICOM Modality Type + Origin: caDSR + Value: DICOM Modality Type + Data File Checksum Type: + Desc: The method by which the file checksum was calculated. + Enum: + - md5sum + - sha1 + - sha256 + Term: + - Code: '11475057' + Definition: The method by which the file checksum was calculated. + Handle: Data File Checksum Type + Origin: caDSR + Value: Data File Checksum Type + Data File Checksum Value: + Desc: A small-sized block of data derived from a file for the purpose of detecting + errors that may have been introduced during file transmission and/or storage + and used to verify data integrity. + Term: + - Code: '11480133' + Definition: A small-sized block of data derived from a file for the purpose + of detecting errors that may have been introduced during file transmission + and/or storage and used to verify data integrity. + Handle: Data File Checksum Value + Origin: caDSR + Value: Data File Checksum Value + Type: TBD + Data File Compression Status: + Desc: The state of data when saved to storage space or during data transmission. + Enum: + - Compressed + - Uncompressed + - Unknown + Term: + - Code: '11387114' + Definition: The state of data when saved to storage space or during data + transmission. + Handle: Data File Compression Status + Origin: caDSR + Value: Data File Compression Status + Data File Description: + Desc: A free text field that can be used to document the content and other + details about an electronic file that may not be captured elsewhere. + Term: + - Code: '11280338' + Definition: A free text field that can be used to document the content + and other details about an electronic file that may not be captured + elsewhere. + Handle: Data File Description + Origin: caDSR + Value: Data File Description + Type: TBD + Data File Format: + Desc: A defined organization or layout representing and structuring data in + a computer file. + Enum: + - ADF + - AVI + - BAI + - BAM + - BCR Biotab + - BED + - BEDPE Format + - BIOM + - Binary Format + - CEL + - CRAI + - CRAM + - CSV + - DICOM + - DOCX + - DSV + - FASTA + - FASTQ + - GCT/Res Format + - GFF3 + - GPR + - GTF + - GZIP Format + - GenBank Format + - HDF5 + - HIC + - HTML + - IDAT + - IDF + - JPEG + - JPEG 2000 + - JSON + - MAF + - MAGE-TAB + - MAT + - MATLAB Script + - MEX + - MPEG-4 + - NIFTI Format + - OME-TIFF + - PDF + - PNG + - Plain Text Data Format + - Python Script Format + - R File Format + - R Markdown + - SDRF + - SVG + - SVS + - Sequence Record Format + - TAR + - TIFF + - TSV + - TXT + - Thermo RAW + - VCF + - XLS + - XLSX + - XML + - YAML + - ZIP + - bedgraph + - bigBed + - bigWig + - gVCF + - mtx + - mzIdentML + - mzML + - mzXML + Term: + - Code: '11416926' + Definition: A defined organization or layout representing and structuring + data in a computer file. + Handle: Data File Format + Origin: caDSR + Value: Data File Format + Data File Name: + Desc: The literal label for an electronic data file. + Term: + - Code: '11284037' + Definition: The literal label for an electronic data file. + Handle: Data File Name + Origin: caDSR + Value: Data File Name + Type: TBD + Data File Size: + Desc: The measure (in bytes) of how much space a data file takes up on a storage + medium. + Term: + - Code: '11479876' + Definition: The measure (in bytes) of how much space a data file takes + up on a storage medium. + Handle: Data File Size + Origin: caDSR + Value: Data File Size + Type: TBD + Days from First Subject Visit to Specimen Collection: + Desc: The number of days from the date the subject first visited to the date + a sample was collected. + Term: + - Code: '11248874' + Definition: The number of days from the date the subject first visited + to the date a sample was collected. + Handle: Days from First Subject Visit to Specimen Collection + Origin: caDSR + Value: Days from First Subject Visit to Specimen Collection + Type: TBD + Days from First Treatment to Specimen Collection: + Desc: The number of days from the date the first treatment was administered + to the date a sample was collected. + Term: + - Code: '11250807' + Definition: The number of days from the date the first treatment was administered + to the date a sample was collected. + Handle: Days from First Treatment to Specimen Collection + Origin: caDSR + Value: Days from First Treatment to Specimen Collection + Type: TBD + Days from Initial Genomic Sequencing to Specimen Collection: + Desc: The number of days from the date the initial genomic sequencing was + done to the date a sample was collected. + Term: + - Code: '11251130' + Definition: The number of days from the date the initial genomic sequencing + was done to the date a sample was collected. + Handle: Days from Initial Genomic Sequencing to Specimen Collection + Origin: caDSR + Value: Days from Initial Genomic Sequencing to Specimen Collection + Type: TBD + Days from Recurrence to Specimen Collection: + Desc: The number of days from the date the disease recurrence was identified + to the date a sample was collected. + Term: + - Code: '11251133' + Definition: The number of days from the date the disease recurrence was + identified to the date a sample was collected. + Handle: Days from Recurrence to Specimen Collection + Origin: caDSR + Value: Days from Recurrence to Specimen Collection + Type: TBD + Days from Specimen Collection to Initial Pathologic Diagnosis: + Desc: The number of days from the date a sample was collected to the date + of the initial pathologic diagnosis. + Term: + - Code: '11253404' + Definition: The number of days from the date a sample was collected to + the date of the initial pathologic diagnosis. + Handle: Days from Specimen Collection to Initial Pathologic Diagnosis + Origin: caDSR + Value: Days from Specimen Collection to Initial Pathologic Diagnosis + Type: TBD + Disease Progression or Recurrence Indicator: + Desc: An indication as to whether the subject is experiencing a worsening + or a return of the disease. + Enum: + - 'No' + - Not Allowed To Collect + - Not Applicable + - Not Reported + - Unknown + - 'Yes' + Term: + - Code: '13529783' + Definition: An indication as to whether the subject is experiencing a + worsening or a return of the disease. + Handle: Disease Progression or Recurrence Indicator + Origin: caDSR + Value: Disease Progression or Recurrence Indicator + "Disease Progression or Recurrence Type": + Desc: A term describing the kind of worsening or return of disease that a + subject is experiencing. + Enum: + - Biochemical + - Distant + - Local + - Locoregional + - Not Reported + - Regional + - Unknown + Term: + - Code: '14742451' + Definition: A term describing the kind of worsening or return of disease + that a subject is experiencing. + Handle: "Disease Progression or Recurrence Type" + Origin: caDSR + Value: "Disease Progression or Recurrence Type" + ECOG Performance Status Score: + Desc: "A score for a functional scale designed to assess disease progression + and its affect on the daily living abilities of the patient that was + developed by Eastern Cooperative Oncology Group (ECOG, now ECOG-ACRIN)." + Enum: + - '0' + - '1' + - '2' + - '3' + - '4' + - '5' + Term: + - Code: '88' + Definition: "A score for a functional scale designed to assess disease + progression and its affect on the daily living abilities of the + patient that was developed by Eastern Cooperative Oncology Group + (ECOG, now ECOG-ACRIN)." + Handle: ECOG Performance Status Score + Origin: caDSR + Value: ECOG Performance Status Score + Environmental Exposure Type: + Desc: "The category related to contact with chemical, biological, or physical + substances found in air, water, food, soil, or product that may have + a harmful effect on a person's health." + Enum: + - Asbestos Exposure + - Chemical Exposure + - Marijuana Smoke Exposure + - Radiation Exposure + - Radon Exposure + - Respirable Crystalline Silica Exposure + - Smoke Exposure + - Smokeless Tobacco Exposure + - Tobacco Related Exposure + - Wood Dust Exposure + Term: + - Code: '11256813' + Definition: "The category related to contact with chemical, biological, + or physical substances found in air, water, food, soil, or product + that may have a harmful effect on a person's health." + Handle: Environmental Exposure Type + Origin: caDSR + Value: Environmental Exposure Type + HGNC Gene Identifier: + Desc: The unique numerical identifier for a particular gene assigned by the + HGNC (HUGO Gene Nomenclature Committee - an organism specific nomenclature + committee). + Enum: + - HGNC (By Reference) + Term: + - Code: '12461467' + Definition: The unique numerical identifier for a particular gene assigned + by the HGNC (HUGO Gene Nomenclature Committee - an organism specific + nomenclature committee). + Handle: HGNC Gene Identifier + Origin: caDSR + Value: HGNC Gene Identifier + ICD-10-CM Disease Code: + Desc: "An alphanumeric value from the tenth version of the International + Classification of Disease (ICD-10-CM, the disease code subset of ICD-10) + used to identify the diagnosis in humans." + Enum: + - ICD-10-CM (By Reference) + Term: + - Code: '11479873' + Definition: "An alphanumeric value from the tenth version of the International + Classification of Disease (ICD-10-CM, the disease code subset of + ICD-10) used to identify the diagnosis in humans." + Handle: ICD-10-CM Disease Code + Origin: caDSR + Value: ICD-10-CM Disease Code + ICD-O-3 Morphology Code: + Desc: The coded result of analyzing the microscopic anatomy of normal and + abnormal cells and tissues of the specimen by examining a thin slice (section) + under a light (optical) or electron microscope. The code represents the + histology of the disease using the third edition of the International + Classification of Diseases for Oncology. + Enum: + - ICD-O-3 (By Reference) + Term: + - Code: '11326261' + Definition: The coded result of analyzing the microscopic anatomy of normal + and abnormal cells and tissues of the specimen by examining a thin + slice (section) under a light (optical) or electron microscope. The + code represents the histology of the disease using the third edition + of the International Classification of Diseases for Oncology. + Handle: ICD-O-3 Morphology Code + Origin: caDSR + Value: ICD-O-3 Morphology Code + Karnofsky Performance Status Score: + Desc: "A score from the Karnofsky Performance Status representing the functional + capabilities or the daily living abilities of a person." + Enum: + - '0' + - '10' + - '100' + - '20' + - '30' + - '40' + - '50' + - '60' + - '70' + - '80' + - '90' + Term: + - Code: '2003853' + Definition: "A score from the Karnofsky Performance Status representing + the functional capabilities or the daily living abilities of a + person." + Handle: Karnofsky Performance Status Score + Origin: caDSR + Value: Karnofsky Performance Status Score + Last Known Disease Status: + Desc: The most recently documented condition or state of an subject's neoplasm. + Enum: + - Biochemical evidence of disease without structural correlate + - Distant Metastasis + - Localized Disease + - New Tumor Event + - Not Allowed To Collect + - Not Applicable + - Not Reported + - Regional Disease + - Tumor Free + - Unknown + - With Tumor + Term: + - Code: '12447172' + Definition: The most recently documented condition or state of an subject's + neoplasm. + Handle: Last Known Disease Status + Origin: caDSR + Value: Last Known Disease Status + Lymph Node Involvement Anatomic Site UBERON Identifier: + Desc: The UBERON identifier of the organ or part of the body describing lymph + node involvement in disease. + Term: + - Code: '14883075' + Definition: The UBERON identifier of the organ or part of the body describing + lymph node involvement in disease. + Handle: Lymph Node Involvement Anatomic Site UBERON Identifier + Origin: caDSR + Value: Lymph Node Involvement Anatomic Site UBERON Identifier + Type: TBD + Method of Diagnosis: + Desc: The clinical or laboratory procedure(s) used in the determination of + a disease diagnosis. + Enum: + - Autopsy + - Biopsy + - Blood Sample + - Bone Marrow Aspirate + - Core Biopsy + - Cystoscopy + - Diagnostic Imaging + - Dilation and Curettage + - Enucleation + - Excisional Biopsy + - Fine Needle Aspiration + - Histopathology + - Imaging Technique + - Incisional Biopsy + - Laparoscopy + - Laparotomy + - Magnetic Resonance Imaging Study File + - Not Reported + - Pap Smear + - Pathologic Review + - Physical Examination + - Surgical Resection + - Thoracentesis + - Tumor Debulking + - Ultrasound Guided Biopsy + - Ultrasound Imaging + - Unknown + Term: + - Code: '14857681' + Definition: The clinical or laboratory procedure(s) used in the determination + of a disease diagnosis. + Handle: Method of Diagnosis + Origin: caDSR + Value: Method of Diagnosis + NCBI Taxonomy ID: + Desc: "A label provided by NCBI Taxonomy Database (https://www.ncbi.nlm.nih.gov/taxonomy/), + which uniquely identifies group or category, at any level, in a system + for classifying plants or animals (including humans) providing ranked + categories for the classification of organisms according to their suspected + evolutionary relationships." + Enum: + - NCBI (By Reference) + Term: + - Code: '10543100' + Definition: "A label provided by NCBI Taxonomy Database (https://www.ncbi.nlm.nih.gov/taxonomy/), + which uniquely identifies group or category, at any level, in a + system for classifying plants or animals (including humans) providing + ranked categories for the classification of organisms according + to their suspected evolutionary relationships." + Handle: NCBI Taxonomy ID + Origin: caDSR + Value: NCBI Taxonomy ID + Person Academic Degree Suffix Abbreviation Text: + Desc: The abbreviation that represents the affix occurring at the end of a + name for an award conferred by a college, university, or other postsecondary + education institution as official recognition for the successful completion + of a program of studies. + Enum: + - AA + - AAS + - AB + - ABA + - AE + - AM + - AS + - BA + - BBA + - BE + - BEd + - BEng + - BFA + - BN + - BS + - BSL + - BSN + - BSW + - BT + - DBA + - DC + - DD + - DDS + - DED + - DMD + - DO + - DPM + - DSW + - DVM + - DrPH + - EdD + - JD + - LLM + - MA + - MBA + - MCE + - MD + - MDI + - ME + - MEE + - MEd + - MFA + - MHSA + - MME + - MPA + - MPH + - MS + - MSL + - MSN + - MSW + - MT + - ND + - OD + - PhD + - PhE + - PharmD + - ScD + - ThD + Term: + - Code: '2668478' + Definition: The abbreviation that represents the affix occurring at the + end of a name for an award conferred by a college, university, or + other postsecondary education institution as official recognition + for the successful completion of a program of studies. + Handle: Person Academic Degree Suffix Abbreviation Text + Origin: caDSR + Value: Person Academic Degree Suffix Abbreviation Text + Person Email Address Text: + Desc: The string of characters that represents the electronic mail address + of a person. + Term: + - Code: '2517550' + Definition: The string of characters that represents the electronic mail + address of a person. + Handle: Person Email Address Text + Origin: caDSR + Value: Person Email Address Text + Type: TBD + Person Family/Last Name: + Desc: A means of identifying an individual by using a word or group of words + indicating a person's last (family) name. Synonym = Last Name, Surname. + Term: + - Code: '2179591' + Definition: A means of identifying an individual by using a word or group + of words indicating a person's last (family) name. Synonym = Last + Name, Surname. + Handle: Person Family/Last Name + Origin: caDSR + Value: Person Family/Last Name + Type: TBD + Person Genealogy Suffix Code: + Desc: Text term to represent an individual's position in a family lineage + or pedigree. + Enum: + - I + - II + - III + - IV + - Jr. + - Sr. + Term: + - Code: '2006475' + Definition: Text term to represent an individual's position in a family + lineage or pedigree. + Handle: Person Genealogy Suffix Code + Origin: caDSR + Value: Person Genealogy Suffix Code + Person Given/First Name: + Desc: A word or group of words indicating a person's first (personal or given) + name; the name that precedes the surname. Synonym = Given Name. + Term: + - Code: '2179589' + Definition: A word or group of words indicating a person's first (personal + or given) name; the name that precedes the surname. Synonym = Given + Name. + Handle: Person Given/First Name + Origin: caDSR + Value: Person Given/First Name + Type: TBD + Person Middle Name: + Desc: A means of identifying an individual by using a word or group of words + indicating a person's middle name. + Term: + - Code: '2179590' + Definition: A means of identifying an individual by using a word or group + of words indicating a person's middle name. + Handle: Person Middle Name + Origin: caDSR + Value: Person Middle Name + Type: TBD + Person Name Prefix Abbreviation Text: + Desc: The abbreviation that represents an affix occurring at or before the + beginning of an individual's name. + Enum: + - Bish. + - Br. + - Ch. + - Dr. + - Fr. + - Miss + - Mr. + - Mrs. + - Ms. + - Prof. + - R. + - Rev. + - Sr. + Term: + - Code: '2663165' + Definition: The abbreviation that represents an affix occurring at or + before the beginning of an individual's name. + Handle: Person Name Prefix Abbreviation Text + Origin: caDSR + Value: Person Name Prefix Abbreviation Text + Person ORCID Text: + Desc: A persistent unique digital identifier assigned to a principal investigator + by the Open Researcher and Contributor ID (ORCID) organization. + Term: + - Code: '10624734' + Definition: A persistent unique digital identifier assigned to a principal + investigator by the Open Researcher and Contributor ID (ORCID) organization. + Handle: Person ORCID Text + Origin: caDSR + Value: Person ORCID Text + Type: TBD + Person Role Type: + Desc: The text that describes the distinguishable characteristics of the action + or activity assigned to or required or expected of a person. + Enum: + - ABS Coordinator + - Abstractor + - Account Administrator + - AdEERS Contact + - Address Module Coordinator + - Admitting Physician + - Adverse Event Coordinator + - Agent Expert + - Agent Inspector + - Alternative Principal Investigator + - Associate + - Attending Physician + - Audiologist + - Branch Chief + - Bronchoscopist + - CDU Web Contact + - CEP Member + - Central Reviewer + - Checklist Completer + - Checklist Supervisor + - Clinical Coordinator + - Clinical Nurse Specialist + - Clinical Research Associate + - Co-Investigator + - Co-Project Officer + - Community Educator + - Concept Review Chair + - Consulting Physician + - Contact Person + - Contract Officer + - Contract Principal Investigator + - Coordinating Investigator + - Coordinator + - Data Manager + - Data Submitter + - Developer + - Division Head + - Drug Company Contact + - ENABLE Coach + - Employee + - Evaluator + - Funded Principal Investigator + - Gastroenterologist + - Grant Investigator + - Grant Principal Investigator + - Grant Specialist + - Group Coordinator + - Guardian + - Head of Division + - Health Care Provider + - Infusion Nurse + - Interpreter + - Interventional Radiologist + - Interviewer + - Investigator + - Laboratory Director + - Laboratory Technologist + - Lead Drug Monitor + - Legal Representative of the Sponsor + - Letter of Intent Review Chair + - Mail Contact + - Mail Contact (Mgr) + - Mail to contact + - Maintainer + - Medical Monitor + - Medical Oncologist + - Medical Physicist + - Neuropathologist + - Nurse + - Nurse Coach + - Nurse Practitioner + - Oncology Nurse + - PCP + - PMB Drug Company Contact + - Participant + - Participant Chief + - Patient + - Pharmaceutical Liaison + - Pharmacist + - Pharmacologist + - Physician + - Physician Assistant + - Physicist + - Population Member + - Practitioner + - Practitioner Assigned + - Primary CDUS Contact + - Primary Shipping Designee + - Primary care physician + - Principal Investigator + - Principal Investigator (MGR) + - Program Director + - Program Specialist + - Project Coordinator + - Project Officer + - Protocol Author + - Protocol Chair + - Protocol Chair at an Organization + - Protocol Lead Investigator + - Protocol Review Chair + - Protocol Specialist + - Radiation Oncologist + - Referring Pathologist + - Referring Physician + - Registrar + - Registration Coordinator + - Regulatory Coordinator + - Representative Investigator + - Research Clinician + - Research Nurse + - Research Pathologist + - Respondent + - Review Liaison + - Review Specialist + - Reviewing Pathologist + - Reviewing Radiologist + - SHE Instructor + - Scientific Monitor + - Secondary CDUS Contact + - Shipping Designee + - Site Coordinator + - Site Investigator + - Site Leader + - Site Personnel + - Site Representative Investigator + - Social Worker + - Sponsor + - Sponsor Medical Expert + - Sponsor/Medical Expert + - Statistician + - Study Chair + - Study Chairperson + - Study Coordinator + - Subject Recruiter + - Submitting Pathologist + - Surgeon + - Surgical Oncologist + - Translator + - Treating Physician + Term: + - Code: '2201713' + Definition: The text that describes the distinguishable characteristics + of the action or activity assigned to or required or expected of a + person. + Handle: Person Role Type + Origin: caDSR + Value: Person Role Type + Primary Cause of Death: + Desc: The circumstance or condition of greatest rank or importance that results + in the death of a living being. + Enum: + - APL Differentiation Syndrome + - Accidental death + - Acute GVHD + - Adult Respiratory Distress Syndrome (ARDS) + - Adverse Event + - Aspiration Pneumonia + - BCNU IP + - Bacterial infection + - Cancer Related + - Cardiac Disease + - Cardiac failure + - Cardiopulmonary Arrest + - Cardiovascular Disorder + - Cardiovascular accident + - Central nervous system(CNS) failure + - Chronic GVHD + - Chronic Obstructive Pulmonary Disease + - Chronic liver disease + - Congestive Heart Failure + - Coronary artery disease (atherosclerosis) + - Dementia (including Alzheimer's disease) + - Diabetes Mellitus + - Disseminated intravascular coagulation (DIC) + - Drug Related + - End-stage Renal Disease + - Failure to Thrive + - Fungal infection + - Gastrointestinal (GI) failure (not liver) + - Gastrointestinal hemorrhage + - Graft Versus Host Disease + - Graft rejection or failure + - HIV/AIDS + - Hemorrhage + - Hemorrhage, not otherwise specified + - Hemorrhagic cystitis + - Hepatitis + - Herpes + - IPS, idiopathic + - IPS, viral, cytomegalovirus(CMV) + - IPS, viral, other + - Immunotherapy-Related + - Infection + - Infection, NOS + - Infection, organism not identified + - Influenza + - Interstitial Pneumonia (IP) NOS + - Intracranial hemorrhage + - Liver failure (not VOD) + - Multiple Organ Failure + - Myocardial infarction + - Natural causes + - Non-protocol cancer therapy + - Not Cancer Related + - Not Reported + - Organ failure, not otherwise specified + - Other cause + - Parkinson's Disease + - Persistence or recurrence of underlying disease + - Pneumonia NOS + - Prior malignancy + - Protozoal infection + - Pulmonary Disease + - Pulmonary Embolism + - Pulmonary failure + - Pulmonary hemorrhage + - Radiation IP + - Recurrence/persistence/progression of disease reported for first HSCT + - Renal Disorder, NOS + - Renal failure + - Respiratory failure + - Sepsis + - Sinusoidal Obstruction Syndrome + - Spinal Muscular Atrophy + - Suicide + - Surgical Complication + - Thromboembolic + - Thrombosis + - Thrombotic thrombocytopenic purpura (HUS/TTP) + - Toxicity + - Unacceptable Toxicity + - Unclassified infection / Infection NOS + - Unknown + - VOD + - Vascular, not otherwise specified + - Veno-occlusive disease (VOD) / sinusodial obstruction syndrome (SOS) + - Viral infection + Term: + - Code: '4783274' + Definition: The circumstance or condition of greatest rank or importance + that results in the death of a living being. + Handle: Primary Cause of Death + Origin: caDSR + Value: Primary Cause of Death + Program Name: + Desc: "The narrative title used to refer to a broad framework (an administrative + umbrella) of goals under which related projects or other research + activities are grouped. Example - Clinical Proteomic Tumor Analysis + Consortium" + Term: + - Code: '11444542' + Definition: "The narrative title used to refer to a broad framework + (an administrative umbrella) of goals under which related projects + or other research activities are grouped. Example - Clinical + Proteomic Tumor Analysis Consortium" + Handle: Program Name + Origin: caDSR + Value: Program Name + Type: TBD + Program Short Name: + Desc: "An acronym or abbreviated form of the title of a broad framework + of goals under which related projects or other research activities + are grouped. Example – CPTAC" + Term: + - Code: '11459801' + Definition: "An acronym or abbreviated form of the title of a broad + framework of goals under which related projects or other research + activities are grouped. Example – CPTAC" + Handle: Program Short Name + Origin: caDSR + Value: Program Short Name + Type: TBD + Progression or Recurrence Anatomic Site UBERON Identifier: + Desc: The UBERON identifier of the organ or part of the body related to the + progressive or recurrent disease. + Term: + - Code: '14883061' + Definition: The UBERON identifier of the organ or part of the body related + to the progressive or recurrent disease. + Handle: Progression or Recurrence Anatomic Site UBERON Identifier + Origin: caDSR + Value: Progression or Recurrence Anatomic Site UBERON Identifier + Type: TBD + Project Name: + Desc: "The narrative title used to refer to an organ-, site-, disease- or + phase-specific data collection within a broad framework of goals under + which related studies or other research activities are grouped." + Term: + - Code: '11459804' + Definition: "The narrative title used to refer to an organ-, site-, disease- + or phase-specific data collection within a broad framework of goals + under which related studies or other research activities are grouped." + Handle: Project Name + Origin: caDSR + Value: Project Name + Type: TBD + Project Short Name: + Desc: "An acronym or abbreviated form of the title used to refer to an + organ-, site- or disease-specific data collection within a broad + framework of goals under which related studies or other research + activities are grouped." + Term: + - Code: '11459806' + Definition: "An acronym or abbreviated form of the title used to refer + to an organ-, site- or disease-specific data collection within + a broad framework of goals under which related studies or other + research activities are grouped." + Handle: Project Short Name + Origin: caDSR + Value: Project Short Name + Type: TBD + Resection or Biopsy Anatomic Site UBERON Identifier: + Desc: The UBERON identifier of the organ or part of the body resected or biopsied + Term: + - Code: '14883054' + Definition: The UBERON identifier of the organ or part of the body resected + or biopsied + Handle: Resection or Biopsy Anatomic Site UBERON Identifier + Origin: caDSR + Value: Resection or Biopsy Anatomic Site UBERON Identifier + Type: TBD + Sex at Birth: + Desc: The biological sex at the time of birth. + Enum: + - Decline to answer + - Don't know + - Female + - Intersex + - Male + - None of these describe me + - Prefer not to answer + - Unknown + - X + Term: + - Code: '7572817' + Definition: The biological sex at the time of birth. + Handle: Sex at Birth + Origin: caDSR + Value: Sex at Birth + Specimen Anatomic Site UBERON Identifier: + Desc: The identifier of the location within the body from which a specimen + was originally obtained. + Term: + - Code: '12083894' + Definition: The identifier of the location within the body from which + a specimen was originally obtained. + Handle: Specimen Anatomic Site UBERON Identifier + Origin: caDSR + Value: Specimen Anatomic Site UBERON Identifier + Type: TBD + Specimen Longest Dimension: + Desc: The maximum length of a straight line passing through the center of + the sample, measured in millimeters. + Term: + - Code: '5432602' + Definition: The maximum length of a straight line passing through the + center of the sample, measured in millimeters. + Handle: Specimen Longest Dimension + Origin: caDSR + Value: Specimen Longest Dimension + Type: TBD + Specimen Shortest Dimension: + Desc: The minimum length of a straight line passing through the center of + the sample, measured in millimeters + Term: + - Code: '5432603' + Definition: The minimum length of a straight line passing through the + center of the sample, measured in millimeters + Handle: Specimen Shortest Dimension + Origin: caDSR + Value: Specimen Shortest Dimension + Type: TBD + Specimen Tumor or Normal Category: + Desc: A text term that represents whether the sample taken was of cellular + composition and architectural patterns as expected (normal), had uncontrolled + cellular proliferation (tumor), or was comprised of morphologically normal + tissue from immediately surrounding the tumor (peritumoral). + Enum: + - Normal + - Not Reported + - Peritumoral + - Tumor + - Unknown + Term: + - Code: '14688604' + Definition: A text term that represents whether the sample taken was of + cellular composition and architectural patterns as expected (normal), + had uncontrolled cellular proliferation (tumor), or was comprised + of morphologically normal tissue from immediately surrounding the + tumor (peritumoral). + Handle: Specimen Tumor or Normal Category + Origin: caDSR + Value: Specimen Tumor or Normal Category + Specimen Type: + Desc: The kind of material that forms the sample as captured in the Ontology + for Biobanking (OBIB), a specimen subset of the Ontology for Biomedical + Investigations (OBI). + Enum: + - OBIB (By Reference) + Term: + - Code: '11253427' + Definition: The kind of material that forms the sample as captured in + the Ontology for Biobanking (OBIB), a specimen subset of the Ontology + for Biomedical Investigations (OBI). + Handle: Specimen Type + Origin: caDSR + Value: Specimen Type + Study Name: + Desc: "The narrative title used as a textual label for a research + data collection. Example – Comparative Molecular Life History + of Spontaneous Canine and Human Gliomas" + Term: + - Code: '11459810' + Definition: "The narrative title used as a textual label for a + research data collection. Example – Comparative Molecular Life + History of Spontaneous Canine and Human Gliomas" + Handle: Study Name + Origin: caDSR + Value: Study Name + Type: TBD + Study Short Name: + Desc: "The acronym or abbreviated form of the title for a research + data collection. Example – GLIOMA01" + Term: + - Code: '11459812' + Definition: "The acronym or abbreviated form of the title for a + research data collection. Example – GLIOMA01" + Handle: Study Short Name + Origin: caDSR + Value: Study Short Name + Type: TBD + Subject Age At Diagnosis: + Desc: Age at the time of diagnosis expressed in number of days since birth. + Term: + - Code: '10609539' + Definition: Age at the time of diagnosis expressed in number of days since + birth. + Handle: Subject Age At Diagnosis + Origin: caDSR + Value: Subject Age At Diagnosis + Type: TBD + Subject Race: + Desc: An arbitrary classification of a taxonomic group that is a division + of a species. It usually arises as a consequence of geographical isolation + within a species and is characterized by shared heredity, physical attributes + and behavior, and in the case of humans, by common history, nationality, + or geographic distribution. The provided values are based on the categories + defined by the U.S. Office of Management and Business and used by the + U.S. Census Bureau. + Enum: + - American Indian or Alaska Native + - Asian + - Black or African American + - Native Hawaiian or other Pacific Islander + - Not Reported + - Not allowed to collect + - Unknown + - White + Term: + - Code: '2192199' + Definition: An arbitrary classification of a taxonomic group that is a + division of a species. It usually arises as a consequence of geographical + isolation within a species and is characterized by shared heredity, + physical attributes and behavior, and in the case of humans, by common + history, nationality, or geographic distribution. The provided values + are based on the categories defined by the U.S. Office of Management + and Business and used by the U.S. Census Bureau. + Handle: Subject Race + Origin: caDSR + Value: Subject Race + Subject Reported Ethnicity: + Desc: An individual's self-described social and cultural grouping, specifically + whether an individual describes themselves as Hispanic or Latino. The + provided values are based on the categories defined by the U.S. Office + of Management and Business and used by the U.S. Census Bureau. + Enum: + - Hispanic or Latino + - Not Hispanic or Latino + - Not allowed to collect + - Not reported + - Unknown + Term: + - Code: '2192217' + Definition: An individual's self-described social and cultural grouping, + specifically whether an individual describes themselves as Hispanic + or Latino. The provided values are based on the categories defined + by the U.S. Office of Management and Business and used by the U.S. + Census Bureau. + Handle: Subject Reported Ethnicity + Origin: caDSR + Value: Subject Reported Ethnicity + Treatment Anatomic Site UBERON Identifier: + Desc: The UBERON identifier of the organ or part of the body targeted by a + therapeutic procedure. + Term: + - Code: '14461856' + Definition: The UBERON identifier of the organ or part of the body targeted + by a therapeutic procedure. + Handle: Treatment Anatomic Site UBERON Identifier + Origin: caDSR + Value: Treatment Anatomic Site UBERON Identifier + Type: TBD + Treatment Type: + Desc: A text term that describes the kind of medical care given to the patient + to mitigate or cure an illness, injury, or reduced health status. + Enum: + - 3-Dimensional Conformal Radiation Therapy + - Allogeneic Hematopoietic Stem Cell Transplantation + - Autologous Stem Cell Transplantation + - Chemotherapy + - Concurrent Chemoradiation + - Conventional Radiotherapy + - External Beam Radiation Therapy + - High-Dose Rate Brachytherapy + - Hormone Therapy + - Immunotherapy + - Intensity-Modulated Radiation Therapy + - Low-Dose Rate Brachytherapy + - Not Reported + - Pharmacotherapy + - Proton Beam Radiation Therapy + - Radiation Therapy + - Radiofrequency Ablation + - Stereotactic Body Radiation Therapy + - Stereotactic Radiosurgery + - Surgical Procedure + - Targeted Molecular Therapy + - Unknown + Term: + - Code: '14737565' + Definition: A text term that describes the kind of medical care given + to the patient to mitigate or cure an illness, injury, or reduced + health status. + Handle: Treatment Type + Origin: caDSR + Value: Treatment Type + Treatment or Therapy Indicator: + Desc: An indicator that describes whether therapy was administered. + Enum: + - 'No' + - Not Reported + - Unknown + - 'Yes' + Term: + - Code: '14713318' + Definition: An indicator that describes whether therapy was administered. + Handle: Treatment or Therapy Indicator + Origin: caDSR + Value: Treatment or Therapy Indicator + Tumor Grade: + Desc: A text term to express the degree of abnormality of cancer cells as + a measure of differentiation and aggressiveness. + Enum: + - G1 + - G2 + - G3 + - G4 + - GB + - GX + - High Grade + - Intermediate Grade + - Low Grade + - Not Applicable + - Not Reported + - Unknown + Term: + - Code: '11325685' + Definition: A text term to express the degree of abnormality of cancer + cells as a measure of differentiation and aggressiveness. + Handle: Tumor Grade + Origin: caDSR + Value: Tumor Grade + Vital Status: + Desc: "The participant’s survival state as being living or deceased." + Enum: + - Alive + - Dead + - Not reported + - Unknown + - Unspecified + Term: + - Code: '2847330' + Definition: "The participant’s survival state as being living or + deceased." + Handle: Vital Status + Origin: caDSR + Value: Vital Status + dbGaP Study Accession: + Desc: A stable unique alphanumeric identifier assigned to a study and any + objects by the database of Genotypes and Phenotypes (dbGaP). + Term: + - Code: '11524544' + Definition: A stable unique alphanumeric identifier assigned to a study + and any objects by the database of Genotypes and Phenotypes (dbGaP). + Handle: dbGaP Study Accession + Origin: caDSR + Value: dbGaP Study Accession + Type: TBD \ No newline at end of file diff --git a/model-desc/crdc-model-terms.yml b/model-desc/crdc-model-terms.yml new file mode 100644 index 0000000..4307724 --- /dev/null +++ b/model-desc/crdc-model-terms.yml @@ -0,0 +1,4564 @@ +Terms: + '0': + Code: '2572624' + Definition: Fully active, able to carry on all pre-disease performance without + restriction. + Handle: '0' + Origin: caDSR + Value: '0' + '1': + Code: '2572286' + Definition: Restricted in physically strenuous activity but ambulatory and + able to carry out work of a light or sedentary nature, e.g., light house + work, office work. + Handle: '1' + Origin: caDSR + Value: '1' + '10': + Code: '2572612' + Definition: Moribund; fatal processes progressing rapidly. + Handle: '10' + Origin: caDSR + Value: '10' + '100': + Code: '2572603' + Definition: Normal; no complaints; no evidence of disease. + Handle: '100' + Origin: caDSR + Value: '100' + '2': + Code: '2572287' + Definition: Ambulatory and capable of all self care but unable to carry out + any work activities. Up and about more than 50% of waking hours. + Handle: '2' + Origin: caDSR + Value: '2' + '20': + Code: '2572611' + Definition: Very sick; hospitalization necessary; active support treatment + is necessary. + Handle: '20' + Origin: caDSR + Value: '20' + '3': + Code: '2572288' + Definition: Capable of only limited selfcare, confined to bed or chair more + than 50% of waking hours. + Handle: '3' + Origin: caDSR + Value: '3' + 3-Dimensional Conformal Radiation Therapy: + Code: '3245269' + Definition: A process by which a dose of radiation is automatically shaped + to closely conform to the entire volume of the tumor, so that surrounding + normal tissue is spared and treatment toxicity is decreased. + Handle: 3-Dimensional Conformal Radiation Therapy + Origin: caDSR + Value: 3-Dimensional Conformal Radiation Therapy + '30': + Code: '2572610' + Definition: Severely disabled; hospitalization is indicated, although death + not imminent. + Handle: '30' + Origin: caDSR + Value: '30' + '4': + Code: '2572289' + Definition: Completely disabled. Cannot carry on any selfcare. Totally confined + to bed or chair. + Handle: '4' + Origin: caDSR + Value: '4' + '40': + Code: '2572609' + Definition: Disabled; requires special care and assistance. + Handle: '40' + Origin: caDSR + Value: '40' + '5': + Code: '2570230' + Definition: Dead. + Handle: '5' + Origin: caDSR + Value: '5' + '50': + Code: '2572608' + Definition: Requires considerable assistance and frequent medical care. + Handle: '50' + Origin: caDSR + Value: '50' + '60': + Code: '2572607' + Definition: Requires occasional assistance, but is able to care for most personal + needs. + Handle: '60' + Origin: caDSR + Value: '60' + '70': + Code: '2572606' + Definition: Cares for self; unable to carry on normal activity or do active + work. + Handle: '70' + Origin: caDSR + Value: '70' + '80': + Code: '2572605' + Definition: Normal activity with effort; some sign or symptoms of disease. + Handle: '80' + Origin: caDSR + Value: '80' + '90': + Code: '2572604' + Definition: Able to carry on normal activity; minor signs or symptoms of disease. + Handle: '90' + Origin: caDSR + Value: '90' + AA: + Code: '2713414' + Definition: A degree granted by a two-year college on successful completion + of the undergraduates course of studies. + Handle: AA + Origin: caDSR + Value: AA + AAS: + Code: '2713415' + Definition: An associate's degree awarded to students who are permitted to + relax some of the general education requirements in order to study more + course work in their program area. This kind of degree is for students + who intend to enter the work force upon graduation. + Handle: AAS + Origin: caDSR + Value: AAS + AB: + Code: '2713414' + Definition: A degree granted by a two-year college on successful completion + of the undergraduates course of studies. + Handle: AB + Origin: caDSR + Value: AB + ABA: + Code: '2713413' + Definition: An associate's degree awarded upon completion of a course of study + usually lasting two years with a focus on business, including the processes + of interchanging goods and services (buying, selling and producing), business + organization, and accounting as used in profit-making and nonprofit public + and private institutions and agencies. + Handle: ABA + Origin: caDSR + Value: ABA + ABS Coordinator: + Code: '2573707' + Definition: ABS Coordinator + Handle: ABS Coordinator + Origin: caDSR + Value: ABS Coordinator + ADF: + Code: '11421996' + Definition: A tab-delimited file defining how each array in an investigation + is used. This data includes what sequence is located at each position + in an array and what the annotation of this sequence is; cross-references + to entries in a public repository can be used if available. + Handle: ADF + Origin: caDSR + Value: ADF + AE: + Code: '2713412' + Definition: An associate's degree awarded upon completion of a course of study + usually lasting two years with a focus on engineering. + Handle: AE + Origin: caDSR + Value: AE + AM: + Code: '2713434' + Definition: An academic degree in a nonscience subject, usually awarded after + one or two years of postgraduate study. + Handle: AM + Origin: caDSR + Value: AM + APL Differentiation Syndrome: + Code: '4770854' + Definition: A syndrome observed in patients with acute promyelocytic leukemia + treated with all-trans retinoic acid. It is characterized by weight gain, + dyspnea, pleural and pericardial effusions, leukocytosis, and renal failure. + Handle: APL Differentiation Syndrome + Origin: caDSR + Value: APL Differentiation Syndrome + AR: + Code: '7552086' + Definition: An eye examination method in which a computer-controlled electronic + optometer is used to automatically measure refractive error. + Handle: AR + Origin: caDSR + Value: AR + AS: + Code: '2582158' + Definition: The use of an angioscope to view the interior of a blood vessel. + Handle: AS + Origin: caDSR + Value: AS + ASMT: + Code: '12057185' + Definition: The results of an assessment or the content of one or more standard + operating procedures (SOP) instance(s). + Handle: ASMT + Origin: caDSR + Value: ASMT + AU: + Code: '2582145' + Definition: The process of recording sound to a storage device. + Handle: AU + Origin: caDSR + Value: AU + AVI: + Code: '11421997' + Definition: A multimedia container format for audio video interleaved (AVI) + files that allows for synchronous audio-with-video playback. + Handle: AVI + Origin: caDSR + Value: AVI + Abstractor: + Code: '2580450' + Definition: A person who retrieves and summarizes information. + Handle: Abstractor + Origin: caDSR + Value: Abstractor + Accidental death: + Code: '2769015' + Definition: 'An unforeseen and unplanned event or circumstance frequently + causing loss or injury.: The absence of life or state of being dead.' + Handle: Accidental death + Origin: caDSR + Value: Accidental death + Account Administrator: + Code: '2573706' + Definition: A person who is responsible for establishing and managing user + accounts. Duties include accepts/rejects membership to an account, assigns + and edits access permissions and resets/revokes user passwords. + Handle: Account Administrator + Origin: caDSR + Value: Account Administrator + Acute GVHD: + Code: '2769014' + Definition: A syndrome of immunologically mediated tissue damage that may + occur following an allogeneic transplant, usually affecting the skin, + liver, and GI tract. The onset is usually within one hundred days of transplantation + or immunologic manipulation. + Handle: Acute GVHD + Origin: caDSR + Value: Acute GVHD + AdEERS Contact: + Code: '2578751' + Definition: A person responsible within the Cooperative Group and/or a particular + clinical trial for the completion and filing of reports (along with any + supporting documentation) on adverse events to NCI and FDA via web-based + Adverse Event Expedited Reporting System (AdEERS). + Handle: AdEERS Contact + Origin: caDSR + Value: AdEERS Contact + Address Module Coordinator: + Code: '2573704' + Definition: A person who coordinates and manages address and contact information + for an organization. + Handle: Address Module Coordinator + Origin: caDSR + Value: Address Module Coordinator + Admitting Physician: + Code: '2578752' + Definition: The physician responsible for the admission of a patient to a + hospital or other inpatient health institution. The admitting physician + evaluates patients, makes admitting decisions and assesses diagnostic + and treatment plans. + Handle: Admitting Physician + Origin: caDSR + Value: Admitting Physician + Adult Respiratory Distress Syndrome (ARDS): + Code: '2769013' + Definition: fulminant pulmonary interstitial and alveolar edema resulting + from diffuse infection, shock, or trauma of the lungs. + Handle: Adult Respiratory Distress Syndrome (ARDS) + Origin: caDSR + Value: Adult Respiratory Distress Syndrome (ARDS) + Adverse Event: + Code: '5207091' + Definition: Any unfavorable or unintended disease, sign, or symptom (including + an abnormal laboratory finding) that is temporally associated with the + use of a medical treatment or procedure, and that may or may not be considered + related to the medical treatment or procedure. Such events can be related + to the intervention, dose, route of administration, patient, or caused + by an interaction with another drug(s) or procedure(s). + Handle: Adverse Event + Origin: caDSR + Value: Adverse Event + Adverse Event Coordinator: + Code: '2573705' + Definition: A designated person who is trained and responsible for coordinating + adverse event review, tracking, surveillance and reporting activities + within a clinical institution or clinical trial. + Handle: Adverse Event Coordinator + Origin: caDSR + Value: Adverse Event Coordinator + Agent Expert: + Code: '2578753' + Definition: A scientist or other professional who is an independent, non-participant + in the agent development effort. The person is responsible for contributing + expert advice on the scientific design and on the conduct of the research + regarding the investigational agent. + Handle: Agent Expert + Origin: caDSR + Value: Agent Expert + Agent Inspector: + Code: '2578754' + Definition: An authorized person who is appointed to audit and officially + inspect the warehousing, prescribing, dispensing, distribution, administration + and documentation practices related to utilization of investigational + agent(s) within a clinical study or/and institution, in order to confirm + the strict drug(s) accountability and to ensure patients safety and the + clinical site compliance with protocol(s) and federal drug laws and regulations. + Handle: Agent Inspector + Origin: caDSR + Value: Agent Inspector + Alive: + Code: '2580948' + Definition: Showing characteristics of life; displaying signs of life. + Handle: Alive + Origin: caDSR + Value: Alive + Allogeneic Hematopoietic Stem Cell Transplantation: + Code: '2688157' + Definition: A clinical treatment in which HSC capable of reconstituting the + immune system and blood production (hematopoiesis) are transferred from + one genetically dissimilar individual to another. The donor and recipient + may or may not be related. 2005 + Handle: Allogeneic Hematopoietic Stem Cell Transplantation + Origin: caDSR + Value: Allogeneic Hematopoietic Stem Cell Transplantation + Alternative Principal Investigator: + Code: '13552913' + Definition: Available in place of something else._An investigator who is responsible + for all aspects of the conduct of a study. + Handle: Alternative Principal Investigator + Origin: caDSR + Value: Alternative Principal Investigator + American Indian or Alaska Native: + Code: '2572232' + Definition: A person having origins in any of the original peoples of North + and South America (including Central America) and who maintains tribal + affiliation or community attachment. (OMB) + Handle: American Indian or Alaska Native + Origin: caDSR + Value: American Indian or Alaska Native + Asbestos Exposure: + Code: '6608022' + Definition: Inhalation of asbestos fibers. + Handle: Asbestos Exposure + Origin: caDSR + Value: Asbestos Exposure + Asian: + Code: '2572233' + Definition: A person having origins in any of the original peoples of the + Far East, Southeast Asia, or the Indian subcontinent, including for example, + Cambodia, China, India, Japan, Korea, Malaysia, Pakistan, the Philippine + Islands, Thailand, and Vietnam. (OMB) + Handle: Asian + Origin: caDSR + Value: Asian + Aspiration Pneumonia: + Code: '3604295' + Definition: Pneumonia secondary to aspiration of liquids and gastric contents + into the lungs. + Handle: Aspiration Pneumonia + Origin: caDSR + Value: Aspiration Pneumonia + Associate: + Code: '2573577' + Definition: A person who is an assistant or subordinate to another professional, + e.g. research associate functioning under the general supervision of the + appointed investigator. + Handle: Associate + Origin: caDSR + Value: Associate + Attending Physician: + Code: '2569168' + Definition: The physician responsible for the administration and medical care + a patient receives. The physician may have the added responsibility of + supervising resident physicians or medical students, and involving consulting + physicians in the prescribed plan of care. + Handle: Attending Physician + Origin: caDSR + Value: Attending Physician + Audiologist: + Code: '2576279' + Definition: A trained non-medical health professional who specializes in the + identification, testing, habilitation and rehabilitation of hearing loss + and other auditory and balance disorders. Particularly, an audiologist + may be involved in diagnostic and screening procedures to determine hearing + deficits, as well as in assessment of amplification devices and instruction + in their care, training in speechreading, and may serve as consultant + to government and industry on issues concerning environmental, noise-induced + hearing loss. Certification requirements for clinical audiology professional + are currently defined at a single level - Certificate of Clinical Competency. + Handle: Audiologist + Origin: caDSR + Value: Audiologist + Autologous Stem Cell Transplantation: + Code: '2688156' + Definition: The transference of stem cells within the same individual. + Handle: Autologous Stem Cell Transplantation + Origin: caDSR + Value: Autologous Stem Cell Transplantation + Autopsy: + Code: '2567287' + Definition: Autopsy; an examination and dissection of a dead body to determine + cause of death or the changes produced by disease. + Handle: Autopsy + Origin: caDSR + Value: Autopsy + BA: + Code: '2573111' + Definition: Bachelor of Arts + Handle: BA + Origin: caDSR + Value: BA + BAI: + Code: '11421998' + Definition: An index file found in the same directory as the binary alignment + map (BAM) file, a compressed binary version of a sequence alignment/map + (SAM) file. + Handle: BAI + Origin: caDSR + Value: BAI + BAM: + Code: '6356231' + Definition: A binary representation of a sequence alignment map (SAM), a compact + and indexable representation of nucleotide sequence alignments, compressed + by the BGZF (Blocked GNU Zip Format) library. + Handle: BAM + Origin: caDSR + Value: BAM + BBA: + Code: '2713410' + Definition: A bachelor's degree in business studies. In most universities, + the degree is conferred upon a student after four years of full-time study + (120 credit hours) in one or more areas of business concentrations. The + BBA program usually includes general business courses and advanced courses + for specific concentrations. + Handle: BBA + Origin: caDSR + Value: BBA + BCNU IP: + Code: '3854252' + Definition: "An antineoplastic nitrosourea. Carmustine alkylates and cross-links + DNA during all phases of the cell cycle, resulting in disruption of + DNA function, cell cycle arrest, and apoptosis. This agent also carbamoylates + proteins, including DNA repair enzymes, resulting in an enhanced cytotoxic + effect. Carmustine is highly lipophilic and crosses the blood-brain + barrier readily. (NCI04): Inflammation of interstitial lung tissue, + usually associated with infection.\r\n" + Handle: BCNU IP + Origin: caDSR + Value: BCNU IP + BCR Biotab: + Code: '11421999' + Definition: Files that consist of aggregate clinical and biospecimen data + across all cases of the given project. Biotab files are supplemental files + that are available in the Genomic Data Commons (GDC) Legacy Archive as + tab-delimited files on a project level basis. These may also include fields + that are not available in the GDC application programming interface (API). + Handle: BCR Biotab + Origin: caDSR + Value: BCR Biotab + BDUS: + Code: '12057439' + Definition: The use of quantitative ultrasound for estimating bone mineral + density status of the peripheral skeleton, usually done at the heel. + Handle: BDUS + Origin: caDSR + Value: BDUS + BE: + Code: '2713409' + Definition: A bachelor's degree in engineering awarded to a student after + three, four or five years of studying engineering at an accredited university. + It is a professional degree that involves a requirement for undertaking + some engineering work. + Handle: BE + Origin: caDSR + Value: BE + BED: + Code: '11422000' + Definition: A tab-delimited text file format that allows the specification + of the sequence data that is displayed in an annotation track. The minimum + required information is chromosome, start position, and end position. + Handle: BED + Origin: caDSR + Value: BED + BEDPE Format: + Code: '14535229' + Definition: A text file format used to store genomic paired-end sequencing + data that includes coordinates and associated metadata. + Handle: BEDPE Format + Origin: caDSR + Value: BEDPE Format + BEd: + Code: '2713408' + Definition: 'A bachelor''s degree in education awarded to students seeking + training to become teachers in primary and secondary schools. ' + Handle: BEd + Origin: caDSR + Value: BEd + BEng: + Code: '2713409' + Definition: A bachelor's degree in engineering awarded to a student after + three, four or five years of studying engineering at an accredited university. + It is a professional degree that involves a requirement for undertaking + some engineering work. + Handle: BEng + Origin: caDSR + Value: BEng + BFA: + Code: '2713407' + Definition: A bachelor's degree in arts awarded to students seeking a professional + education in the visual or performing arts. + Handle: BFA + Origin: caDSR + Value: BFA + BI: + Code: '2582121' + Definition: An imaging technique that use non-invasive measurements to map + biologically-generated magnetic fields. + Handle: BI + Origin: caDSR + Value: BI + BIOM: + Code: '11422059' + Definition: A general-use format for representing biological sample by observation + contingency tables. It is designed for general use in broad areas of comparative + -omics. The primary use of this format is to represent operational taxonomic + unit (OTU) and metagenome tables. + Handle: BIOM + Origin: caDSR + Value: BIOM + BMD: + Code: '12057440' + Definition: Any method used to measure bone mineral content and density. + Handle: BMD + Origin: caDSR + Value: BMD + BN: + Code: '2713406' + Definition: A four year academic degree in the science and principles of nursing, + granted by a tertiary education university or similarly accredited school. + Handle: BN + Origin: caDSR + Value: BN + BS: + Code: '2573112' + Definition: Bachelor of Science + Handle: BS + Origin: caDSR + Value: BS + BSL: + Code: '2713405' + Definition: A special-purpose degree that allows someone who has some prior + studies but not achieved a bachelor's degree to resume their education + and pursue the study of law towards an eventual Juris Doctor degree. + Handle: BSL + Origin: caDSR + Value: BSL + BSN: + Code: '2713406' + Definition: A four year academic degree in the science and principles of nursing, + granted by a tertiary education university or similarly accredited school. + Handle: BSN + Origin: caDSR + Value: BSN + BSW: + Code: '2713404' + Definition: A bachelor's degree awarded to someone who has successfully completed + undergraduate studies in psychosocial evaluation and intervention, including + therapy, to effect a change in the feelings, attitudes and behavior of + a client, whether an individual, group or community. + Handle: BSW + Origin: caDSR + Value: BSW + BT: + Code: '2713403' + Definition: A bachelor's degree in theological disciplines. Candidates for + this degree typically must complete course work in Greek or Hebrew, as + well as systematic theology, biblical theology, ethics, homiletics and + Christian ministry. + Handle: BT + Origin: caDSR + Value: BT + Bacterial infection: + Code: '2769012' + Definition: infections and associated diseases by bacteria, general or unspecified. + Handle: Bacterial infection + Origin: caDSR + Value: Bacterial infection + Binary Format: + Code: '11422004' + Definition: A file format in which file information is stored in the form + of ones and zeros. It can be easily converted to text representations + for visualization and editing. + Handle: Binary Format + Origin: caDSR + Value: Binary Format + Biochemical: + Code: '14527469' + Definition: An indication that biochemical markers of a disease are present. + Handle: Biochemical + Origin: caDSR + Value: Biochemical + Biochemical evidence of disease without structural correlate: + Code: '13254014' + Definition: An indication that biochemical markers of a disease are present + but morphological markers are absent. + Handle: Biochemical evidence of disease without structural correlate + Origin: caDSR + Value: Biochemical evidence of disease without structural correlate + Biopsy: + Code: '5476777' + Definition: The removal of tissue specimens or fluid from the living body + for microscopic examination, performed to establish a diagnosis. + Handle: Biopsy + Origin: caDSR + Value: Biopsy + Bish.: + Code: '2573582' + Definition: A courtesy title for a person who supervises a number of local + churches or a diocese, being in the Greek, Roman Catholic, Anglican, and + other churches a member of the highest order of the ministry. + Handle: Bish. + Origin: caDSR + Value: Bish. + Black or African American: + Code: '2572313' + Definition: A person having origins in any of the Black racial groups of Africa. + Terms such as "Haitian" or "Negro" can be used in addition to "Black or + African American". (OMB) + Handle: Black or African American + Origin: caDSR + Value: Black or African American + Blood Sample: + Code: '6689599' + Definition: A small volume of blood removed for testing or storage. + Handle: Blood Sample + Origin: caDSR + Value: Blood Sample + Bone Marrow Aspirate: + Code: '6699943' + Definition: Aspirate from bone marrow. + Handle: Bone Marrow Aspirate + Origin: caDSR + Value: Bone Marrow Aspirate + Br.: + Code: '2576359' + Definition: A courtesy title for a member of a religious order, fraternity, + movement, or other group. + Handle: Br. + Origin: caDSR + Value: Br. + Branch Chief: + Code: '2578755' + Definition: A professional that is responsible for the direction and supervision + of a division within a larger or more complex organization. + Handle: Branch Chief + Origin: caDSR + Value: Branch Chief + Bronchoscopist: + Code: '2576280' + Definition: Bronchoscopist; a doctor or technician who operates a bronchoscope. + Handle: Bronchoscopist + Origin: caDSR + Value: Bronchoscopist + CD: + Code: '2582122' + Definition: The use of pulsed ultrasound to visualize blood flow through blood + vessels. Flow direction and speed are shown in differing colors. + Handle: CD + Origin: caDSR + Value: CD + CDU Web Contact: + Code: '2578756' + Definition: A person within a Cooperative Group, institution, clinical site, + or/and particular study responsible for completion and submission of clinical + trial data to the NCI via the web-based Clinical Data Update System (CDUS). + Handle: CDU Web Contact + Origin: caDSR + Value: CDU Web Contact + CEL: + Code: '12135194' + Definition: A type of file that stores the results of intensity calculations + of pixel values for DNA microarray image analysis. The data includes an + intensity value, standard deviation of the intensity, the number of pixels + used to calculate the intensity value, a flag to indicate an outlier as + calculated by the algorithm, and a user defined flag indicating whether + the feature should be excluded from future analysis. The file also stores + the previously stated data for each feature on the probe array. + Handle: CEL + Origin: caDSR + Value: CEL + CEP Member: + Code: '2578757' + Definition: A member of the multidisciplinary Concept Evaluation Panel (CEP) + organized under the leadership of the NCI Cancer Therapy Evaluation Program + to evaluate Phase III clinical trial proposals. Membership includes NCI + staff and representatives of NCI-sponsored Cooperative Groups and Cancer + Centers, as well as other sources. Two-thirds of the CEP members (clinicians, + basic scientists, statisticians, other oncology professionals, and patient + advocates) are not affiliated with NCI. + Handle: CEP Member + Origin: caDSR + Value: CEP Member + CF: + Code: '2582155' + Definition: Cinefluorography (retired) + Handle: CF + Origin: caDSR + Value: CF + CP: + Code: '2582160' + Definition: Endoscopic examination of the uterine cervix and vagina. + Handle: CP + Origin: caDSR + Value: CP + CR: + Code: '2582119' + Definition: X-ray imaging that replaces film with a phosphor imaging plate + to create a digital image. + Handle: CR + Origin: caDSR + Value: CR + CRAI: + Code: '12517496' + Definition: An external index file created by the sequencing data archive + alongside a compressed reference-oriented alignment map (CRAM) file. This + index file is available in the same directory as the CRAM file and is + required for selective access to the genomic sequence alignment data within + the CRAM file. + Handle: CRAI + Origin: caDSR + Value: CRAI + CRAM: + Code: '11422061' + Definition: A more highly compressed alternative to the BAM and SAM DNA sequence + alignment file formats. It uses reference based compression, with only + base calls that differ from a designated reference sequence being stored. + Handle: CRAM + Origin: caDSR + Value: CRAM + CS: + Code: '2569349' + Definition: Endoscopic examination of the urinary bladder or urethra. + Handle: CS + Origin: caDSR + Value: CS + CSV: + Code: '7797849' + Definition: A text file format that separates data elements with commas. + Handle: CSV + Origin: caDSR + Value: CSV + CT: + Code: '2575842' + Definition: A method of examining body organs by scanning them with X rays + and using a computer to construct a series of cross-sectional scans along + a single axis. + Handle: CT + Origin: caDSR + Value: CT + CTPROTOCOL: + Code: '12057441' + Definition: The rules and procedures for computed tomography acquisition. + Handle: CTPROTOCOL + Origin: caDSR + Value: CTPROTOCOL + Cancer Related: + Code: '14473325' + Definition: A death attributed to the progression of a cancer-related pathologic + condition. + Handle: Cancer Related + Origin: caDSR + Value: Cancer Related + Cardiac Disease: + Code: '3181118' + Definition: A non-neoplastic or neoplastic disorder that affects the heart + and/or the pericardium. Representative examples include endocarditis, + pericarditis, atrial myxoma, cardiac myeloid sarcoma, and pericardial + malignant mesothelioma. + Handle: Cardiac Disease + Origin: caDSR + Value: Cardiac Disease + Cardiac failure: + Code: '2718360' + Definition: Inability of the heart to pump blood at an adequate rate to meet + tissue metabolic requirements or the ability to do so only at an elevated + filling pressure. + Handle: Cardiac failure + Origin: caDSR + Value: Cardiac failure + Cardiopulmonary Arrest: + Code: '3604293' + Definition: Cessation of breathing and/or cardiac function. + Handle: Cardiopulmonary Arrest + Origin: caDSR + Value: Cardiopulmonary Arrest + Cardiovascular Disorder: + Code: '2630208' + Definition: A non-neoplastic or neoplastic disorder affecting the heart or + the vessels (arteries, veins and lymph vessels). Representative examples + of non-neoplastic cardiovascular disorders are endocarditis and hypertension. Representative + examples of neoplastic cardiovascular disorders are endocardial myxoma + and angiosarcoma. -- 2003 + Handle: Cardiovascular Disorder + Origin: caDSR + Value: Cardiovascular Disorder + Cardiovascular accident: + Code: '3837932' + Definition: A sudden loss of neurologic function secondary to hemorrhagic + or ischemia in the brain parenchyma due to a vascular event. Infarction + or hemorrhage may be demonstrated either directly by imaging,laboratory, + or pathologic examination in patients with symptom duration less than + 24 hours, or inferred by symptoms lasting greater than or equal to 24 + hours (or fatal within 24 hours) that cannot be attributed to another + cause. Diagnostic tests include CT scan, MRI, angiography, and EEG to + locate and evaluate the extent of the hemorrhagic or ischemic damage in + the brain parenchyma, coagulation studies, complete blood count, comprehensive + metabolic panel, and urinalysis. + Handle: Cardiovascular accident + Origin: caDSR + Value: Cardiovascular accident + Central Reviewer: + Code: '2576281' + Definition: A single person who critically evaluates and reports on laboratory + test results, protocols , or other data. + Handle: Central Reviewer + Origin: caDSR + Value: Central Reviewer + Central nervous system(CNS) failure: + Code: '2769009' + Definition: 'The main information-processing organs of the nervous system, + consisting of the brain, spinal cord, and meninges.: loss of ability to + function normally.' + Handle: Central nervous system(CNS) failure + Origin: caDSR + Value: Central nervous system(CNS) failure + Ch.: + Code: '2573583' + Definition: A courtesy title for an ecclesiastic attached to the chapel of + a royal court, college, etc., or to a military unit. + Handle: Ch. + Origin: caDSR + Value: Ch. + Checklist Completer: + Code: '2573701' + Definition: A person that is responsible for the completion of forms that + contain a list of information regarding procedure or content validation. + Handle: Checklist Completer + Origin: caDSR + Value: Checklist Completer + Checklist Supervisor: + Code: '2578758' + Definition: A person who is responsible for directing personnel involved with + the coordination and completion of forms that contain a list of information + regarding procedure or content validation. + Handle: Checklist Supervisor + Origin: caDSR + Value: Checklist Supervisor + Chemical Exposure: + Code: '4394583' + Definition: Contact with a chemical substance through touch, inhalation, or + ingestion. + Handle: Chemical Exposure + Origin: caDSR + Value: Chemical Exposure + Chemotherapy: + Code: '5102333' + Definition: The use of synthetic or naturally-occurring chemicals for the + treatment of diseases. + Handle: Chemotherapy + Origin: caDSR + Value: Chemotherapy + Chronic GVHD: + Code: '2769010' + Definition: A syndrome of immunologically mediated tissue damage that may + occur following an allogeneic transplant, and may affect multiple organs + with manifestations similar to autoimmune diseases. The onset is usually + within three years of transplantation or immunologic manipulation. + Handle: Chronic GVHD + Origin: caDSR + Value: Chronic GVHD + Chronic Obstructive Pulmonary Disease: + Code: '3385484' + Definition: A chronic and progressive lung disorder characterized by the loss + of elasticity of the bronchial tree and the air sacs, destruction of the + air sacs wall, thickening of the bronchial wall, and mucous accumulation + in the bronchial tree. The pathologic changes result in the disruption + of the air flow in the bronchial airways. Signs and symptoms include shortness + of breath, wheezing, productive cough, and chest tightness. The two main + types of chronic obstructive pulmonary disease are chronic obstructive + bronchitis and emphysema. + Handle: Chronic Obstructive Pulmonary Disease + Origin: caDSR + Value: Chronic Obstructive Pulmonary Disease + Chronic liver disease: + Code: '3837931' + Definition: Signs of chronic liver disease which include jaundice, ascites, + palmar erythema, spider hemangiomas, gynecomastia, and encephalopathy. + Handle: Chronic liver disease + Origin: caDSR + Value: Chronic liver disease + Clinical Coordinator: + Code: '2578759' + Definition: A person to whom a clinical investigator delegates a few of the + routine administrative requirements of a protocol. The duties and responsibilities + of a clinical research coordinator may vary across different infrastructures. + Generally, the coordinator manages the subject's clinical trial participation + and provides a vital linkage between the subject, the investigator, and + the sponsor. + Handle: Clinical Coordinator + Origin: caDSR + Value: Clinical Coordinator + Clinical Nurse Specialist: + Code: '2918943' + Definition: Clinical Nurse Specialist (CNS) - a licensed registered nurse + who has graduate preparation (a master's or a doctorate) in nursing as + a CNS. The CNS is a clinical expert in theory-based and/or research-based + nursing practice within a specialty area. (NACNS) + Handle: Clinical Nurse Specialist + Origin: caDSR + Value: Clinical Nurse Specialist + Clinical Research Associate: + Code: '2573713' + Definition: A person who is employed by a study sponsor or by a contract research + organization (CRO), operates independently from the clinical study site + and functions as a monitor, and/or auditor, and/or a project director + within a particular trial or institution. + Handle: Clinical Research Associate + Origin: caDSR + Value: Clinical Research Associate + Co-Investigator: + Code: '2578760' + Definition: One of two or more scientists working together on a research project. + A person that equally contributes to the preparation of the protocol, + and shares the responsibilities of this position, including medical monitoring + (particularly toxicity/safety), liaison with statisticians over analysis, + and the generation of a report containing the results. + Handle: Co-Investigator + Origin: caDSR + Value: Co-Investigator + Co-Project Officer: + Code: '2578761' + Definition: One of two or more people who has authority concerning the content, + organization, or administration of a clinical trial or other work. + Handle: Co-Project Officer + Origin: caDSR + Value: Co-Project Officer + Community Educator: + Code: '2578762' + Definition: A person that provides coordination between physicians, hospital + staff, and administration in the implementation of programs that are to + develop and deliver a range of education and information to both patients + and healthcare personnel. + Handle: Community Educator + Origin: caDSR + Value: Community Educator + Compressed: + Code: '11480563' + Definition: A file containing data that is in a compressed state. + Handle: Compressed + Origin: caDSR + Value: Compressed + Concept Review Chair: + Code: '2573714' + Definition: The presiding officer who examines abstract or generic ideas generalized + from particular instances. + Handle: Concept Review Chair + Origin: caDSR + Value: Concept Review Chair + Concurrent Chemoradiation: + Code: '13328537' + Definition: Treatment in which radiation therapy is administered at the same + time as chemotherapy. + Handle: Concurrent Chemoradiation + Origin: caDSR + Value: Concurrent Chemoradiation + Congestive Heart Failure: + Code: '2565944' + Definition: Failure of the heart to pump a sufficient amount of blood to meet + the needs of the body tissues, resulting in tissue congestion and edema. + Signs and symptoms include shortness of breath, pitting edema, enlarged + tender liver, engorged neck veins, and pulmonary rales. + Handle: Congestive Heart Failure + Origin: caDSR + Value: Congestive Heart Failure + Consulting Physician: + Code: '2576282' + Definition: A physician that has expertise in a specific medical disciple + that can offer expertise or advice to other physicians and healthcare + providers. + Handle: Consulting Physician + Origin: caDSR + Value: Consulting Physician + Contact Person: + Code: '2576382' + Definition: a channel for communication between groups + Handle: Contact Person + Origin: caDSR + Value: Contact Person + Contract Officer: + Code: '2578765' + Definition: A person with the authority to enter into, administer, and/or + terminate contracts and make related determinations and findings. + Handle: Contract Officer + Origin: caDSR + Value: Contract Officer + Contract Principal Investigator: + Code: '2578766' + Definition: A scientist or health care professional that has a financial agreement, + as outlined in a binding statement of work, with the sponsor to bear full + and ultimate responsibility for the scientific, administrative, ethical, + legal, technical, and fiscal aspects of the study, and for day-to-day + management of the scientific project, as well as for documenting and reporting + its results. + Handle: Contract Principal Investigator + Origin: caDSR + Value: Contract Principal Investigator + Conventional Radiotherapy: + Code: '7735393' + Definition: A course of radiotherapy where minimal imaging support (i.e. X-rays + films) is used to determine the positioning of radiotherapy. + Handle: Conventional Radiotherapy + Origin: caDSR + Value: Conventional Radiotherapy + Coordinating Investigator: + Code: '2576283' + Definition: A research scientist whose task is to see that work, or events, + goes harmoniously. + Handle: Coordinating Investigator + Origin: caDSR + Value: Coordinating Investigator + Coordinator: + Code: '7607366' + Definition: A person responsible for organizing multiple events or efforts + into a smaller number of tasks. + Handle: Coordinator + Origin: caDSR + Value: Coordinator + Core Biopsy: + Code: '3346664' + Definition: The removal of a tissue sample using a needle with a relatively + large diameter, for microscopic examination. + Handle: Core Biopsy + Origin: caDSR + Value: Core Biopsy + Coronary artery disease (atherosclerosis): + Code: '2760269' + Definition: An imbalance between myocardial functional requirements and the + capacity of the coronary vessels to supply sufficient blood flow. It is + a form of MYOCARDIAL ISCHEMIA (insufficient blood supply to the heart + muscle) caused by a decreased capacity of the coronary vessels. + Handle: Coronary artery disease (atherosclerosis) + Origin: caDSR + Value: Coronary artery disease (atherosclerosis) + Cystoscopy: + Code: '2569349' + Definition: Endoscopic examination of the urinary bladder or urethra. + Handle: Cystoscopy + Origin: caDSR + Value: Cystoscopy + DBA: + Code: '2713402' + Definition: A research doctorate that focuses upon business practice. The + DBA, like the Ph.D, often requires significant coursework beyond that + required at the masters level. + Handle: DBA + Origin: caDSR + Value: DBA + DC: + Code: '2713401' + Definition: The Doctor of Chiropractic degree is a degree awarded for graduates + who have completed a medical doctoral program in accredited chiropractic + college. The academic and clinical training include, but are not limited + to, the use of current diagnostic and therapeutic procedures that specifically + involve the adjustment and manipulation of the articulations and adjacent + tissues of the human body, particularly of the spinal column. State laws, + as well as the nation's antitrust laws, may allow Doctors of Chiropractic + to utilize ancillary health care procedures commonly referred to as being + in the common domain. + Handle: DC + Origin: caDSR + Value: DC + DD: + Code: '2582123' + Definition: An ultrasound technique that uses a B-mode transducer to visualize + blood flow and a Doppler probe to assess velocity and direction of the + blood flow. + Handle: DD + Origin: caDSR + Value: DD + DDS: + Code: '2713763' + Definition: The Doctor of Dental Surgery degree is the first-professional, + postgraduate degree awarded for graduates who have completed a program + of studies in dental surgery. + Handle: DDS + Origin: caDSR + Value: DDS + DED: + Code: '2713398' + Definition: A professional doctorate that prepares the student for academic, + administrative or specialized positions in education. + Handle: DED + Origin: caDSR + Value: DED + DF: + Code: '2582156' + Definition: Digital fluoroscopy (retired) + Handle: DF + Origin: caDSR + Value: DF + DG: + Code: '2582124' + Definition: Examination of a body part by transillumination. + Handle: DG + Origin: caDSR + Value: DG + DICOM: + Code: '2967848' + Definition: A comprehensive set of standards for communications between medical + imaging devices, including handling, storing and transmitting information + in medical imaging. It includes a file format definition and a network + communication protocol. + Handle: DICOM + Origin: caDSR + Value: DICOM + DM: + Code: '2582161' + Definition: Microscopy that uses a digital camera instead of eyepieces. The + microscope is connected to a computer monitor and images are obtained + in real time. + Handle: DM + Origin: caDSR + Value: DM + DMD: + Code: '2713397' + Definition: The Doctor of Dental Medicine degree is the first-professional, + postgraduate degree awarded for graduates who have completed a program + of studies in dental medical science. The academic standard is equivalent + to Ph.D. + Handle: DMD + Origin: caDSR + Value: DMD + DMS: + Code: '12057442' + Definition: A noninvasive diagnostic procedure that allows for in vivo microscopic + examination of the epidermis, the dermoepidermal junction, and the papillary + dermis. This aids in the identification of specific diagnostic patterns + related to color and cell structure to aid in differentiating malignant + and benign lesions. + Handle: DMS + Origin: caDSR + Value: DMS + DO: + Code: '2713395' + Definition: The Doctor of Osteopathic Medicine degree is the first-professional, + postgraduate degree awarded to the graduates who have completed an osteopathic + medicine program which is designed to prepare physicians who are especially + concerned with maintaining continuing personal relationships with patients, + their families and their optimum interaction with the community environmental + patterns. + Handle: DO + Origin: caDSR + Value: DO + DOC: + Code: '2929970' + Definition: An organized collection of records that describe a particular + body of data. + Handle: DOC + Origin: caDSR + Value: DOC + DOCX: + Code: '11422062' + Definition: A file type that uses Open XML Document format to store data for + Microsoft Word and other compatible programs. + Handle: DOCX + Origin: caDSR + Value: DOCX + DPM: + Code: '2713762' + Definition: The Doctor of Podiatric Medicine degree is the first-professional, + postgraduate degree awarded to the graduates who have completed an podiatric + medicine program which is designed to prepare physicians who prevent, + diagnose, and treat diseases and disorders that affect the human foot + and ankle. + Handle: DPM + Origin: caDSR + Value: DPM + DS: + Code: '2582154' + Definition: Digital Subtraction Angiography (retired) + Handle: DS + Origin: caDSR + Value: DS + DSV: + Code: '11422063' + Definition: A delimiter-separated values file that contains plain text data + divided into rows and columns by a designated special character. + Handle: DSV + Origin: caDSR + Value: DSV + DSW: + Code: '2713437' + Definition: A doctoral degree for experienced social work practitioners in + advanced practice, research and/or policy analysis (although some DSW + recipients are not social workers). Much of the course work emphasizes + qualitative and quantitative analysis methods. The degree typically leads + to teaching, research, leadership roles in agencies, or self-employed + social work practice. + Handle: DSW + Origin: caDSR + Value: DSW + DVM: + Code: '2573115' + Definition: Doctor of Veterinary Medicine + Handle: DVM + Origin: caDSR + Value: DVM + DX: + Code: '2582137' + Definition: Acquisition or display of radiographic images using digital techniques. + Handle: DX + Origin: caDSR + Value: DX + Data Manager: + Code: '2569218' + Definition: A person primarily responsible for database creation, data collection, + validation, integration, coding, review, quality evaluation, and archiving, + as well as for preparation of reports and data displays. + Handle: Data Manager + Origin: caDSR + Value: Data Manager + Data Submitter: + Code: '14616433' + Definition: An individual that prepares and submits data. + Handle: Data Submitter + Origin: caDSR + Value: Data Submitter + Dead: + Code: '2847328' + Definition: The absence of life or state of being dead. + Handle: Dead + Origin: caDSR + Value: Dead + Decline to answer: + Code: '2577233' + Definition: Used to indicate when a respondent makes a decision to not answer + a question. + Handle: Decline to answer + Origin: caDSR + Value: Decline to answer + Dementia (including Alzheimer's disease): + Code: '3165569' + Definition: An acquired organic mental disorder with loss of intellectual + abilities of sufficient severity to interfere with social or occupational + functioning. The dysfunction is multifaceted and involves memory, behavior, + personality, judgment, attention, spatial relations, language, abstract + thought, and other executive functions. The intellectual decline is usually + progressive, and initially spares the level of consciousness. + Handle: Dementia (including Alzheimer's disease) + Origin: caDSR + Value: Dementia (including Alzheimer's disease) + Developer: + Code: '2638256' + Definition: A person or organization that designs software and writes the + programs. Software development includes the design of the user interface + and the program architecture as well as programming the source code. A + somewhat broader scope of computer programming or a specialty of project + managing. + Handle: Developer + Origin: caDSR + Value: Developer + Diabetes Mellitus: + Code: '3292684' + Definition: A metabolic disorder characterized by abnormally high blood sugar + levels due to diminished production of insulin or insulin resistance/desensitization. + Handle: Diabetes Mellitus + Origin: caDSR + Value: Diabetes Mellitus + Diagnostic Imaging: + Code: '3234169' + Definition: Any method that uses a visual display of structural or functional + patterns of organs or tissues for diagnostic evaluation. + Handle: Diagnostic Imaging + Origin: caDSR + Value: Diagnostic Imaging + Dilation and Curettage: + Code: '3528551' + Definition: A surgical scraping and removal of the inner lining of the uterus + through direct dilation of the uterine cervix. + Handle: Dilation and Curettage + Origin: caDSR + Value: Dilation and Curettage + Disseminated intravascular coagulation (DIC): + Code: '2769008' + Definition: Disseminated intravascular coagulation (DIC) is a pathological + process in the body where the blood starts to coagulate throughout the + whole body. This depletes the body of its platelets and coagulation factors, + and there is an increased the risk of hemorrhage. There are a variety + of causes of DIC, all usually causing the release of chemicals into the + blood that instigates the coagulation. (from Wikipedia) + Handle: Disseminated intravascular coagulation (DIC) + Origin: caDSR + Value: Disseminated intravascular coagulation (DIC) + Distant: + Code: '5627051' + Definition: A biological process that involves the transfer and growth of + cancer cells from the site of the primary tumor. Relocation of malignant + cells during metastasis can be restricted to movement within a specific + tissue/organ or may entail migration to a distal locus within the body. + This phenotype is a characteristic of all malignant tumors. + Handle: Distant + Origin: caDSR + Value: Distant + Distant Metastasis: + Code: '5627051' + Definition: A biological process that involves the transfer and growth of + cancer cells from the site of the primary tumor. Relocation of malignant + cells during metastasis can be restricted to movement within a specific + tissue/organ or may entail migration to a distal locus within the body. + This phenotype is a characteristic of all malignant tumors. + Handle: Distant Metastasis + Origin: caDSR + Value: Distant Metastasis + Division Head: + Code: '2578767' + Definition: The official that is responsible for the administrative, research + and medical activities within a clinical program, or subdivision of organization + such as a hospital. A division head is responsible for the overall direction + in the conduct of research; provision and coordination of training and + education; operations, staffing, and maintenance of the facilities. + Handle: Division Head + Origin: caDSR + Value: Division Head + Don't know: + Code: '3361449' + Definition: The answer is not known by the person answering. + Handle: Don't know + Origin: caDSR + Value: Don't know + Dr.: + Code: '2565675' + Definition: A courtesy title for a person who has received a doctorate degree + or who practices medicine. + Handle: Dr. + Origin: caDSR + Value: Dr. + DrPH: + Code: '2713761' + Definition: Doctor of Public Health is an academic degree in public health. + The prior degree is generally earned in the closely related professional + field, e.g. medicine. + Handle: DrPH + Origin: caDSR + Value: DrPH + Drug Company Contact: + Code: '2578768' + Definition: A person who acts as a channel for communication with a commercial + enterprise which produces substances intended for use in the diagnosis, + cure, mitigation, treatment, or prevention of disease. + Handle: Drug Company Contact + Origin: caDSR + Value: Drug Company Contact + Drug Related: + Code: '2760851' + Definition: An adverse effect of a drug used therapeutically or diagnostically. + Handle: Drug Related + Origin: caDSR + Value: Drug Related + EC: + Code: '2566518' + Definition: A procedure that uses ultrasonic waves directed over the chest + wall to obtain a graphic record of the heart's position, motion of the + walls, or internal parts such as the valves. + Handle: EC + Origin: caDSR + Value: EC + ECG: + Code: '12060150' + Definition: A procedure that displays the electrical activity of the heart. + Handle: ECG + Origin: caDSR + Value: ECG + EEG: + Code: '6401745' + Definition: The neurophysiologic exploration of the electrical activity of + the brain by the application of electrodes to the scalp. The resulting + traces are known as an electroencephalogram (EEG). This test is used to + assess brain damage, epilepsy and other problems. + Handle: EEG + Origin: caDSR + Value: EEG + EMG: + Code: '4821875' + Definition: An assessment of skeletal muscle function and nerve control, obtained + by recording and studying the intrinsic electrical properties of the muscles. + Handle: EMG + Origin: caDSR + Value: EMG + ENABLE Coach: + Code: '13966064' + Definition: A telehealth approach for palliative care targeted to rural patients + with advanced cancer or other serious illnesses and their family caregivers._Someone + who teaches a special skill (e.g., how to implement a treatment or intervention). + Handle: ENABLE Coach + Origin: caDSR + Value: ENABLE Coach + EOG: + Code: '12057566' + Definition: An electrophysiologic test that measures the standing potential + between the cornea and Bruch's membrane. Primary applications are in ophthalmological + diagnosis and in recording eye movements. + Handle: EOG + Origin: caDSR + Value: EOG + EPS: + Code: '2582147' + Definition: A cardiac procedure performed under fluoroscopy to determine the + area of the heart that is the source of aberrant electrical impulses that + give rise to arrhythmias. Aberrant pathways can be terminated by ablation. + Handle: EPS + Origin: caDSR + Value: EPS + ES: + Code: '2558723' + Definition: (en-DAHS-ko-pee) The use of a thin, lighted tube (called an endoscope) + to examine the inside of the body. + Handle: ES + Origin: caDSR + Value: ES + EdD: + Code: '2713398' + Definition: A professional doctorate that prepares the student for academic, + administrative or specialized positions in education. + Handle: EdD + Origin: caDSR + Value: EdD + Employee: + Code: '2573699' + Definition: A person working for another person or a business firm on a full- + or part-time basis and who receives payment for this work. + Handle: Employee + Origin: caDSR + Value: Employee + End-stage Renal Disease: + Code: '4395774' + Definition: Long-standing and persistent renal disease with glomerular filtration + rate (GFR) less than 15 ml/min. + Handle: End-stage Renal Disease + Origin: caDSR + Value: End-stage Renal Disease + Enucleation: + Code: '2577243' + Definition: A surgical procedure by which tissue or an organ (usually containing + a tumor) is removed without rupture from a specific anatomic site. + Handle: Enucleation + Origin: caDSR + Value: Enucleation + Evaluator: + Code: '2576284' + Definition: A person who determines the significance, worth, or condition + of something by careful appraisal and study. + Handle: Evaluator + Origin: caDSR + Value: Evaluator + Excisional Biopsy: + Code: '2576316' + Definition: A surgical procedure in which an entire lesion is removed for + microscopic examination. + Handle: Excisional Biopsy + Origin: caDSR + Value: Excisional Biopsy + External Beam Radiation Therapy: + Code: '4947832' + Definition: A type of radiation therapy that uses a machine to aim high-energy + rays at the cancer from outside of the body. + Handle: External Beam Radiation Therapy + Origin: caDSR + Value: External Beam Radiation Therapy + FA: + Code: '2582159' + Definition: A diagnostic procedure that uses the fluorescence of fluorescein + dye to examine the blood flow in the choroid and retina. + Handle: FA + Origin: caDSR + Value: FA + FASTA: + Code: '11422064' + Definition: A sequence in FASTA format consists of a single-line description, + followed by lines of sequence data. The first character of the description + line is a greater-than (">") symbol in the first column. Sequences are + represented in the standard IUB/IUPAC single letter amino acid and nucleic + acid codes, with a single hyphen or dash being used to represent a gap + of indeterminate length; in amino acid sequences asterix ("*") can represent + a translation stop. + Handle: FASTA + Origin: caDSR + Value: FASTA + FASTQ: + Code: '11422065' + Definition: A a tab-delimited containing information about an investigation, + including its name, a description, the investigator's contact details, + bibliographic references, and free text descriptions of any relevant protocols. + Handle: FASTQ + Origin: caDSR + Value: FASTQ + FID: + Code: '12057567' + Definition: A medical device placed on or inserted in an anatomic site for + accurate visualization of a particular area, prior to radiation treatment + or surgery. Examples include markers inserted in the prostate gland for + visualization of the site affected by cancer, prior to radiation therapy; + markers taped to the scalp prior to imaging in frameless stereotactic + brain surgery; and femoral and tibial pins used for spatial orientation + in total knee replacement. + Handle: FID + Origin: caDSR + Value: FID + FS: + Code: '2582162' + Definition: A technique used to examine of the back (fundus) and other anatomical + structures of the eye with a magnifying instrument. + Handle: FS + Origin: caDSR + Value: FS + Failure to Thrive: + Code: '3854253' + Definition: A clinical finding indicating less than normal growth in an infant + or child, or a state of global decline in an adult. + Handle: Failure to Thrive + Origin: caDSR + Value: Failure to Thrive + Female: + Code: '2567172' + Definition: A person who belongs to the sex that normally produces ova. The + term is used to indicate biological sex distinctions, or cultural gender + role distinctions, or both. + Handle: Female + Origin: caDSR + Value: Female + Fine Needle Aspiration: + Code: '3252620' + Definition: The removal of tissue or fluid with a thin needle for examination + under a microscope. + Handle: Fine Needle Aspiration + Origin: caDSR + Value: Fine Needle Aspiration + Fr.: + Code: '2565678' + Definition: Father; a male parent. + Handle: Fr. + Origin: caDSR + Value: Fr. + Funded Principal Investigator: + Code: '2593461' + Definition: "The investigator named on the award document. This investigator + has full and ultimate responsibility\r\nfor all research conducted under + the award." + Handle: Funded Principal Investigator + Origin: caDSR + Value: Funded Principal Investigator + Fungal infection: + Code: '2769007' + Definition: An infection caused by eukaryotic heterotrophic organisms that + live as saprobes or parasites, including mushrooms, yeasts, smuts, molds, + etc. They reproduce either sexually or asexually, and have life cycles + that range from simple to complex. Filamentous fungi refer to those that + grow as multicellular colonies (mushrooms and molds). + Handle: Fungal infection + Origin: caDSR + Value: Fungal infection + G1: + Code: '10987208' + Definition: Describes tumor cells that generally retain the appearance of + normal cells and tend to grow and spread at a slower rate than undifferentiated + or poorly differentiated tumor cells. + Handle: G1 + Origin: caDSR + Value: G1 + G2: + Code: '4614616' + Definition: 'Describes tumor cells that have lost some of the appearance of + normal cells. They tend to grow and spread at a faster rate than well + differentiated tumor cells. ' + Handle: G2 + Origin: caDSR + Value: G2 + G3: + Code: '5424651' + Definition: Describes tumor cells that generally have lost most of the appearance + of normal cells. They tend to grow and spread. + Handle: G3 + Origin: caDSR + Value: G3 + G4: + Code: '5428031' + Definition: A term used to describe cells or tissues that do not have specialized + ("mature") structures or functions. Undifferentiated cancer cells often + grow and spread quickly. + Handle: G4 + Origin: caDSR + Value: G4 + GB: + Code: '6050322' + Definition: A morphologic qualifier indicating that a neoplasm is of borderline + malignancy. + Handle: GB + Origin: caDSR + Value: GB + GCT/Res Format: + Code: '11422066' + Definition: A tab-delimited text file that contains gene expression data as + a column for each sample, a row for each gene, and an expression value + for each gene in each sample. RES differs from GCT by having labels for + each gene's absent (A) versus present (P) calls as generated by Affymetrix's + GeneChip software. + Handle: GCT/Res Format + Origin: caDSR + Value: GCT/Res Format + GFF3: + Code: '11422130' + Definition: A tab-separated format for sequence data. It uses one line per + feature, each containing 9 columns of data, plus optional track definition + lines. + Handle: GFF3 + Origin: caDSR + Value: GFF3 + GM: + Code: '2582141' + Definition: The use of various technologies to resolve the structure or features + of objects too small or fine to naturally be seen by eye. + Handle: GM + Origin: caDSR + Value: GM + GPR: + Code: '11422131' + Definition: A tab-delimited text file format developed by Axon Instruments + and used to export data from the microarray image analysis tool GenePix. + Handle: GPR + Origin: caDSR + Value: GPR + GTF: + Code: '11422132' + Definition: A tab-delimited text format based on the general feature format + (GFF) but which also contains some additional information for each gene. + Handle: GTF + Origin: caDSR + Value: GTF + GX: + Code: '10987209' + Definition: A morphologic qualifier indicating that the grade of a neoplasm + cannot be assessed. + Handle: GX + Origin: caDSR + Value: GX + GZIP Format: + Code: '2929849' + Definition: A file format consisting of a 10-byte header containing a magic + number, a version number, and a timestamp, a Deflate-compressed body, + and an 8-byte footer containing a checksum and the length of the original + uncompressed data. + Handle: GZIP Format + Origin: caDSR + Value: GZIP Format + Gastroenterologist: + Code: '2833542' + Definition: (GAS-tro-en-ter-AHL-o-jist) A doctor who specializes in diagnosing + and treating disorders of the digestive system. + Handle: Gastroenterologist + Origin: caDSR + Value: Gastroenterologist + Gastrointestinal (GI) failure (not liver): + Code: '2769005' + Definition: '(GAS-tro-in-TES-tih-nul) GI. Refers to the stomach and intestines.: + loss of ability to function normally.' + Handle: Gastrointestinal (GI) failure (not liver) + Origin: caDSR + Value: Gastrointestinal (GI) failure (not liver) + Gastrointestinal hemorrhage: + Code: '2769006' + Definition: '(GAS-tro-in-TES-tih-nul) GI. Refers to the stomach and intestines.: + Bleeding or escape of blood from a vessel.' + Handle: Gastrointestinal hemorrhage + Origin: caDSR + Value: Gastrointestinal hemorrhage + GenBank Format: + Code: '11422129' + Definition: A type of flat file format that allows for the storage of DNA + or protein sequences and annotations. It consists of an annotation section + and a sequence section. + Handle: GenBank Format + Origin: caDSR + Value: GenBank Format + Graft Versus Host Disease: + Code: '2636869' + Definition: An incompatibility reaction (which may be fatal) in a subject + (host) of low immunological competence (deficient lymphoid tissue) who + has been the recipient of immunologically competent lymphoid tissue from + a donor who lacks at least one antigen possessed by the recipient host; + the reaction, or disease, is the result of action of the transplanted + cells against those host tissues that possess the antigen not possessed + by the donor. Seen most commonly following bone marrow transplantation, + acute disease is seen after 5-40 days and chronic disease weeks to months + after transplantation, affecting, principally, the gastrointestinal tract, + liver, and skin. + Handle: Graft Versus Host Disease + Origin: caDSR + Value: Graft Versus Host Disease + Graft rejection or failure: + Code: '2779293' + Definition: Failure of transplanted tissue to become functional or operational, + often as a result of destruction by the host's immune system. + Handle: Graft rejection or failure + Origin: caDSR + Value: Graft rejection or failure + Grant Investigator: + Code: '2573709' + Definition: An individual designated by the grantee to take part in the conduction + of the study or to participate in a scientific activity being supported + by the grant. + Handle: Grant Investigator + Origin: caDSR + Value: Grant Investigator + Grant Principal Investigator: + Code: '2578772' + Definition: An individual designated by the grantee to direct the project + or activity being supported by the grant. He or she is responsible for + the scientific, legal, administrative, and technical aspects of the grant + and accountable to the grantee for the proper conduct of the project or + activity. The Principle Investigator (PI) must have a formal written appointment + with the applicant organization, which must be in the form of an official + relationship between the parties, but need not involve a salary or other + form of remuneration. The PI is a member of the grantee team responsible + for ensuring compliance with the financial and administrative aspects + of the award and with organizational as well as Federal requirements. + Handle: Grant Principal Investigator + Origin: caDSR + Value: Grant Principal Investigator + Grant Specialist: + Code: '2573715' + Definition: Grant Specialist + Handle: Grant Specialist + Origin: caDSR + Value: Grant Specialist + Group Coordinator: + Code: '2578769' + Definition: A person that is responsible for the integration and interaction + of work or events from an assembly of different people with diverse interests + and operations. + Handle: Group Coordinator + Origin: caDSR + Value: Group Coordinator + Guardian: + Code: '2578770' + Definition: An individual who is authorized under applicable State or local + law to consent on behalf of a child or incapable person to general medical + care including participation in clinical research. + Handle: Guardian + Origin: caDSR + Value: Guardian + HC: + Code: '2565699' + Definition: A physical, printed version of information from a computer. + Handle: HC + Origin: caDSR + Value: HC + HD: + Code: '2582148' + Definition: The analysis of hemodynamic pressure changes to obtain diagnostic + information about the function of the right and left ventricles during + systole and diastole. + Handle: HD + Origin: caDSR + Value: HD + HDF5: + Code: '11422133' + Definition: A hierarchical, filesystem-like data format that can store metadata + in the form of user-defined, named attributes, which are attached to groups + and datasets, and representations of images and tables built up using + datasets, groups and attributes. + Handle: HDF5 + Origin: caDSR + Value: HDF5 + HGNC (By Reference): + Code: '12126009' + Definition: The worldwide authority that assigns standardized nomenclature + to human genes. The HUGO Gene Nomenclature Committee is responsible for + approving unique symbols and names for human loci, including protein coding + genes, ncRNA genes, and pseudogenes, to allow unambiguous scientific communication. + It is jointly funded by the US National Human Genome Research Institute + (NHGRI) and Wellcome (UK) and operates under the auspices of the Human + Genome Organization (HUGO). + Handle: HGNC (By Reference) + Origin: caDSR + Value: HGNC (By Reference) + HIC: + Code: '14728934' + Definition: An indexed binary format designed to permit fast random access + to contact matrix heatmaps. + Handle: HIC + Origin: caDSR + Value: HIC + HIV/AIDS: + Code: '3838716' + Definition: 'Human immunodeficiency virus. Species of LENTIVIRUS, subgenus + primate lentiviruses (LENTIVIRUSES, PRIMATE), formerly designated T-cell + lymphotropic virus type III/lymphadenopathy-associated virus (HTLV-III/LAV). + It is acknowledged to be the agent responsible for the acute infectious + manifestations, neurologic disorders, and immunologic abnormalities linked + to the ACQUIRED IMMUNODEFICIENCY SYNDROME.: Used to indicate that either + or both of two items or options may be valid.: A syndrome resulting from + the acquired deficiency of cellular immunity caused by the human immunodeficiency + virus (HIV). It is characterized by the reduction of the Helper T-lymphocytes + in the peripheral blood and the lymph nodes; opportunistic infections + (usually pneumocystis carinii pneumonia, cytomegalovirus (CMV) infections, + tuberculosis, candida infections, and cryptococcosis); and the development + of malignant neoplasms (usually non-Hodgkin''s lymphoma and Kaposi''s + sarcoma). The human immunodeficiency virus is transmitted through sexual + contact, sharing of contaminated needles, or transfusion of contaminated + blood. Generalized lymphadenopathy, fever, weight loss, and chronic diarrhea + are common symptoms of AIDS. The patients usually die either of opportunistic + infections or malignant neoplasms. -- 2004' + Handle: HIV/AIDS + Origin: caDSR + Value: HIV/AIDS + HTML: + Code: '11422134' + Definition: A standard markup language used to display content on a web page, + as specified by the World Wide Web Consortium (W3C). + Handle: HTML + Origin: caDSR + Value: HTML + Head of Division: + Code: '2573703' + Definition: Head of Division + Handle: Head of Division + Origin: caDSR + Value: Head of Division + Health Care Provider: + Code: '2578773' + Definition: Persons who provides health care as part of their job responsibilities, + or a person or organization who is licensed to supply health care. + Handle: Health Care Provider + Origin: caDSR + Value: Health Care Provider + Hemorrhage: + Code: '4395748' + Definition: Bleeding or escape of blood from a vessel. + Handle: Hemorrhage + Origin: caDSR + Value: Hemorrhage + Hemorrhage, not otherwise specified: + Code: '2769002' + Definition: 'Bleeding or escape of blood from a vessel.: Not characterized + in any other way.' + Handle: Hemorrhage, not otherwise specified + Origin: caDSR + Value: Hemorrhage, not otherwise specified + Hemorrhagic cystitis: + Code: '2769003' + Definition: 'Bleeding or escape of blood from a vessel.: Inflammation of the + urinary bladder. (Dorland, 27th ed)' + Handle: Hemorrhagic cystitis + Origin: caDSR + Value: Hemorrhagic cystitis + Hepatitis: + Code: '3257061' + Definition: Inflammation of the liver; usually from a viral infection, but + sometimes from toxic agents. + Handle: Hepatitis + Origin: caDSR + Value: Hepatitis + Herpes: + Code: '3837928' + Definition: Any inflammatory skin disease caused by a herpesvirus and characterized + by the formation of small vesicles in clusters. + Handle: Herpes + Origin: caDSR + Value: Herpes + High Grade: + Code: '3288211' + Definition: Used to describe tumor samples that exhibit poorly differentiated + or undifferentiated cells. They are generally expected to be fast growing + and aggressive. + Handle: High Grade + Origin: caDSR + Value: High Grade + High-Dose Rate Brachytherapy: + Code: '2584511' + Definition: Internal radiation treatment that targets a cancerous tissue with + accurate, high doses of radiation through the use of inserted temporary + implants. + Handle: High-Dose Rate Brachytherapy + Origin: caDSR + Value: High-Dose Rate Brachytherapy + Hispanic or Latino: + Code: '2581176' + Definition: A person of Cuban, Mexican, Puerto Rican, South or Central American, + or other Spanish culture or origin, regardless of race. The term, "Spanish + origin," can be used in addition to "Hispanic or Latino." (OMB) + Handle: Hispanic or Latino + Origin: caDSR + Value: Hispanic or Latino + Histopathology: + Code: '2574778' + Definition: The microscopic study of characteristic tissue abnormalities by + employing various cytochemical and immunocytochemical stains. -- 2004 + Handle: Histopathology + Origin: caDSR + Value: Histopathology + Hormone Therapy: + Code: '4340414' + Definition: Various treatment modalities that produce the desired therapeutic + effect by means of change of hormone/hormones level. The treatment may + include administration of hormones or hormone analogs to the patient, + or decreasing the level of hormones in the body by using hormone antagonists, + or hormone ablation therapy. + Handle: Hormone Therapy + Origin: caDSR + Value: Hormone Therapy + I: + Code: '2578677' + Definition: Preceding all others in time or space or degree. + Handle: I + Origin: caDSR + Value: I + ICD-10-CM (By Reference): + Code: '6356782' + Definition: An extension of the ICD-10 created by the U.S. National Center + for Health Statistics so that the system could be used to capture more + morbidity data. This extension included a section of procedure codes. + Handle: ICD-10-CM (By Reference) + Origin: caDSR + Value: ICD-10-CM (By Reference) + ICD-O-3 (By Reference): + Code: '12126010' + Definition: The third edition of the International Classification of Diseases + for Oncology, published in 2000, used principally in tumor and cancer + registries for coding the site (topography) and the histology (morphology) + of neoplasms. + Handle: ICD-O-3 (By Reference) + Origin: caDSR + Value: ICD-O-3 (By Reference) + IDAT: + Code: '11495707' + Definition: A proprietary, encrypted XML-based, compressed electronic file + format from Illumina Inc. for storing genome-wide profiling data. The + data contains a summary of the intensity data generated from each probe + used during a sequencing run. + Handle: IDAT + Origin: caDSR + Value: IDAT + IDF: + Code: '11422065' + Definition: A a tab-delimited containing information about an investigation, + including its name, a description, the investigator's contact details, + bibliographic references, and free text descriptions of any relevant protocols. + Handle: IDF + Origin: caDSR + Value: IDF + II: + Code: '2577175' + Definition: A suffix denoting the second person having the same complete name + (first, middle, and family names). + Handle: II + Origin: caDSR + Value: II + III: + Code: '2577176' + Definition: A suffix denoting the third person having the same complete name + (first, middle, and family names). + Handle: III + Origin: caDSR + Value: III + IO: + Code: '2582139' + Definition: Radiography done within the oral cavity. + Handle: IO + Origin: caDSR + Value: IO + IOL: + Code: '12057568' + Definition: Calculations made to determine the required optical power for + an intra-ocular lens that will be implanted following cataract surgery. + Its strength is a factor of corneal refractive power, ocular media type, + and axial length. + Handle: IOL + Origin: caDSR + Value: IOL + IPS, idiopathic: + Code: '2774525' + Definition: 'An inflammatory lung disease characterized by diffuse interstitial + pneumonitis and alveolitis leading to interstitial fibrosis in the absence + of an identifiable infectious agent.: Describes a disease of unknown cause.' + Handle: IPS, idiopathic + Origin: caDSR + Value: IPS, idiopathic + IPS, viral, cytomegalovirus(CMV): + Code: '2768977' + Definition: 'An inflammatory lung disease characterized by diffuse interstitial + pneumonitis and alveolitis leading to interstitial fibrosis in the absence + of an identifiable infectious agent.: Having to do with a virus.: A genus + of the family herpesviridae, subfamily betaherpesvirinae, infecting the + salivary glands, liver, spleen, lungs, eyes, and other organs, in which + they produce characteristically enlarged cells with intranuclear inclusions.' + Handle: IPS, viral, cytomegalovirus(CMV) + Origin: caDSR + Value: IPS, viral, cytomegalovirus(CMV) + IPS, viral, other: + Code: '2768975' + Definition: 'An inflammatory lung disease characterized by diffuse interstitial + pneumonitis and alveolitis leading to interstitial fibrosis in the absence + of an identifiable infectious agent.: Having to do with a virus.: Not + otherwise specified.' + Handle: IPS, viral, other + Origin: caDSR + Value: IPS, viral, other + IV: + Code: '2577177' + Definition: A suffix denoting the fourth person having the same complete name + (first, middle, and family names). + Handle: IV + Origin: caDSR + Value: IV + IVOCT: + Code: '12057569' + Definition: Optical coherence tomography used for imaging within blood vessels. + Handle: IVOCT + Origin: caDSR + Value: IVOCT + IVUS: + Code: '2582150' + Definition: An invasive procedure in which sound waves (called ultrasound) + are bounced off of vascular tissues from within the vessel and the echoes + produce a picture (sonogram). + Handle: IVUS + Origin: caDSR + Value: IVUS + Imaging Technique: + Code: '5283972' + Definition: Any technology or method that aids in the visualization of any + biological process, cell, tissue or organ for use in screening, diagnosis, + surgical procedures or therapy. + Handle: Imaging Technique + Origin: caDSR + Value: Imaging Technique + Immunotherapy: + Code: '5102332' + Definition: Therapy designed to induce changes in a patient's immune status + in order to treat disease. + Handle: Immunotherapy + Origin: caDSR + Value: Immunotherapy + Immunotherapy-Related: + Code: '13204084' + Definition: An observation that a situation is related to immunotherapy received. + Handle: Immunotherapy-Related + Origin: caDSR + Value: Immunotherapy-Related + Incisional Biopsy: + Code: '2757939' + Definition: A surgical procedure in which part of a lesion is removed for + microscopic examination. + Handle: Incisional Biopsy + Origin: caDSR + Value: Incisional Biopsy + Infection: + Code: '3604289' + Definition: A disorder resulting from the presence and activity of a microbial, + viral, or parasitic agent. It can be transmitted by direct or indirect + contact. + Handle: Infection + Origin: caDSR + Value: Infection + Infection, NOS: + Code: '13347071' + Definition: The invasion of an organism's body tissues by disease-causing + agents and their multiplication, as well as the reaction by the host to + these organisms and/or toxins that the organisms produce._Not characterized + in any other way. + Handle: Infection, NOS + Origin: caDSR + Value: Infection, NOS + Infection, organism not identified: + Code: '2768993' + Definition: 'A disorder resulting from the presence and activity of a microbial, + viral, fungal, or parasitic agent. It can be transmitted by direct or + indirect contact.: A living thing, such as an animal, a plant, a bacterium, + or a fungus.: The finding is not present, but a value of ''none'' cannot + be unequivocally established absence in the current context.' + Handle: Infection, organism not identified + Origin: caDSR + Value: Infection, organism not identified + Influenza: + Code: '3604288' + Definition: An acute viral infection of the respiratory tract, occurring in + isolated cases, in epidemics, or in pandemics; it is caused by serologically + different strains of viruses (influenzaviruses) designated A, B, and C, + has a 3-day incubation period, and usually lasts for 3 to 10 days. It + is marked by inflammation of the nasal mucosa, pharynx, and conjunctiva; + headache; myalgia; often fever, chills, and prostration; and occasionally + involvement of the myocardium or central nervous system. + Handle: Influenza + Origin: caDSR + Value: Influenza + Infusion Nurse: + Code: '2918941' + Definition: 'A method of putting fluids, including drugs, into the bloodstream. + Also called intravenous infusion.: A health professional trained to care + for people who are ill or disabled.' + Handle: Infusion Nurse + Origin: caDSR + Value: Infusion Nurse + Intensity-Modulated Radiation Therapy: + Code: '3991473' + Definition: An advanced form of 3-Dimensional Conformal Radiation Therapy + Handle: Intensity-Modulated Radiation Therapy + Origin: caDSR + Value: Intensity-Modulated Radiation Therapy + Intermediate Grade: + Code: '3335158' + Definition: "A term referring to the degree of differentiation of a malignant + neoplasm and indicating that it is moderately differentiated.\r\n" + Handle: Intermediate Grade + Origin: caDSR + Value: Intermediate Grade + Interpreter: + Code: '2576593' + Definition: Someone who mediates between speakers of different languages. + Handle: Interpreter + Origin: caDSR + Value: Interpreter + Intersex: + Code: '2575558' + Definition: A person (one of unisexual specimens) who is born with genitalia + and/or secondary sexual characteristics of indeterminate sex, or which + combine features of both sexes. + Handle: Intersex + Origin: caDSR + Value: Intersex + Interstitial Pneumonia (IP) NOS: + Code: '3854251' + Definition: "Not characterized in any other way.: Inflammation of interstitial + lung tissue, usually associated with infection.\r\n" + Handle: Interstitial Pneumonia (IP) NOS + Origin: caDSR + Value: Interstitial Pneumonia (IP) NOS + Interventional Radiologist: + Code: '6156304' + Definition: A radiologist that specializes in the use of minimally invasive + image-guided procedures for the diagnosis and treatment of disease. + Handle: Interventional Radiologist + Origin: caDSR + Value: Interventional Radiologist + Interviewer: + Code: '2576595' + Definition: The person who manages an interview and asks the questions. + Handle: Interviewer + Origin: caDSR + Value: Interviewer + Intracranial hemorrhage: + Code: '2768998' + Definition: Bleeding within the cranium. + Handle: Intracranial hemorrhage + Origin: caDSR + Value: Intracranial hemorrhage + Investigator: + Code: '2569282' + Definition: a researcher in a clinical trial or clinical study. + Handle: Investigator + Origin: caDSR + Value: Investigator + JD: + Code: '2713436' + Definition: A professional doctorate typically awarded by an accredited U.S. + law school after successfully completing three years of post-graduate + law study. Generally, a 4-year undergraduate degree is required to be + eligible for entry into a JD program. + Handle: JD + Origin: caDSR + Value: JD + JPEG: + Code: '11422138' + Definition: A file compression format mostly used for color and greyscale + photographs. + Handle: JPEG + Origin: caDSR + Value: JPEG + JPEG 2000: + Code: '11422135' + Definition: A discrete wavelet transform (DWT)-based compression standard + electronic file format for storing video images. + Handle: JPEG 2000 + Origin: caDSR + Value: JPEG 2000 + JSON: + Code: '11422136' + Definition: A common open standard file format and data interchange format + that uses human-readable text consisting of attribute-value pairs and + arrays to store and transmit data. + Handle: JSON + Origin: caDSR + Value: JSON + Jr.: + Code: '2577069' + Definition: A suffix used to distinguish a son from his father when they have + the same given name. + Handle: Jr. + Origin: caDSR + Value: Jr. + KER: + Code: '12057570' + Definition: The measurement of the curvature of the anterior corneal surface. + Handle: KER + Origin: caDSR + Value: KER + KO: + Code: '2582153' + Definition: Selection of a key image by the interpreting physician. + Handle: KO + Origin: caDSR + Value: KO + LEN: + Code: '12057571' + Definition: The use of a lensometer to determine the optical strength of eye + glass lenses. + Handle: LEN + Origin: caDSR + Value: LEN + LLM: + Code: '2713435' + Definition: An advanced law degree generally earned in a course of specialized + study in law. + Handle: LLM + Origin: caDSR + Value: LLM + LP: + Code: '2559024' + Definition: (lap-a-RAHS-ko-pee) The insertion of a thin, lighted tube (called + a laparoscope) through the abdominal wall to inspect the inside of the + abdomen and remove tissue samples. + Handle: LP + Origin: caDSR + Value: LP + LS: + Code: '2582125' + Definition: A method for obtaining information about the surface morphology + and topology of an object. + Handle: LS + Origin: caDSR + Value: LS + Laboratory Director: + Code: '2578771' + Definition: A person who plans, organizes, coordinates and oversees the overall + operation of laboratory activities. The laboratory director establishes + policies and procedures that govern the utilization of community laboratory + services, and ensures that the laboratory and support personnel receive + the appropriate training associated with the work involved. + Handle: Laboratory Director + Origin: caDSR + Value: Laboratory Director + Laboratory Technologist: + Code: '2576286' + Definition: A technically trained person who performs laboratory activities + and provides laboratory analysis according to laboratory policies, procedures + and protocols. + Handle: Laboratory Technologist + Origin: caDSR + Value: Laboratory Technologist + Laparoscopy: + Code: '3859297' + Definition: Laparoscopic examination of the abdominal cavity and its contents. + Handle: Laparoscopy + Origin: caDSR + Value: Laparoscopy + Laparotomy: + Code: '3131259' + Definition: Creation of a surgical opening into the abdominal cavity. + Handle: Laparotomy + Origin: caDSR + Value: Laparotomy + Lead Drug Monitor: + Code: '2578779' + Definition: The primary individual who over a period of time checks on and + maintains continuous observation of state, condition, situation, or process + relating to substances intended for use in diagnosis, cure, mitigation, + treatment, or prevention of disease as a check on output, efficiency, + conduct, etc. and warns of faults, or gives advice and instruction by + way of reporting or caution. + Handle: Lead Drug Monitor + Origin: caDSR + Value: Lead Drug Monitor + Legal Representative of the Sponsor: + Code: '2578780' + Definition: An individual with expertise in the law who provides legal counsel + and representation to the individual, company, institution, or organization + taking responsibility for the initiation, management, and financing of + a study. + Handle: Legal Representative of the Sponsor + Origin: caDSR + Value: Legal Representative of the Sponsor + Letter of Intent Review Chair: + Code: '2578781' + Definition: A person who presides over a review committee or panel, which + evaluates letters of intent (LOI) for clinical trials. + Handle: Letter of Intent Review Chair + Origin: caDSR + Value: Letter of Intent Review Chair + Liver failure (not VOD): + Code: '2768996' + Definition: 'A large organ located in the upper abdomen. The liver cleanses + the blood and aids in digestion by secreting bile.: loss of ability to + function normally.' + Handle: Liver failure (not VOD) + Origin: caDSR + Value: Liver failure (not VOD) + Local: + Code: '3461432' + Definition: A disease that is confined to a specific organ or tissue and has + not spread to other anatomic sites. + Handle: Local + Origin: caDSR + Value: Local + Localized Disease: + Code: '3461432' + Definition: A disease that is confined to a specific organ or tissue and has + not spread to other anatomic sites. + Handle: Localized Disease + Origin: caDSR + Value: Localized Disease + Locoregional: + Code: '14880672' + Definition: A disease that occurs within a specific organ or tissue and extends + into adjacent areas including lymph nodes. + Handle: Locoregional + Origin: caDSR + Value: Locoregional + Low Grade: + Code: '3288210' + Definition: Used to describe tumor samples that exhibit well to moderately + well differentiated cells. They are generally expected to be slow growing + and less aggressive. + Handle: Low Grade + Origin: caDSR + Value: Low Grade + Low-Dose Rate Brachytherapy: + Code: '3028886' + Definition: Internal radiation treatment that targets a cancerous tissue with + low doses of radiation through the use of inserted temporary or permanent + implants. + Handle: Low-Dose Rate Brachytherapy + Origin: caDSR + Value: Low-Dose Rate Brachytherapy + M3D: + Code: '12057573' + Definition: A structural template used as the basis for manufacturing three + dimensional objects. + Handle: M3D + Origin: caDSR + Value: M3D + MA: + Code: '2582163' + Definition: An image of blood vessels constructed using magnetic resonance + imaging. + Handle: MA + Origin: caDSR + Value: MA + MAF: + Code: '11422137' + Definition: A tab-delimited text file containing mutation information aggregated + from variant call files (VCF) across a project, trial or study. + Handle: MAF + Origin: caDSR + Value: MAF + MAGE-TAB: + Code: '2953599' + Definition: A tab-delimited, spreadsheet-based format that can be used for + annotating and communicating microarray data in a MIAME (Minimum Information + About a Microarray Experiment) compliant fashion. + Handle: MAGE-TAB + Origin: caDSR + Value: MAGE-TAB + MAT: + Code: '11422139' + Definition: A proprietary, binary data container format used by MATLAB software + to store workspace variables. + Handle: MAT + Origin: caDSR + Value: MAT + MATLAB Script: + Code: '11422140' + Definition: A file that contains MATLAB commands and function calls. + Handle: MATLAB Script + Origin: caDSR + Value: MATLAB Script + MBA: + Code: '2713760' + Definition: Master of Business Administration is a master's degree in business. + Handle: MBA + Origin: caDSR + Value: MBA + MCE: + Code: '2713433' + Definition: A postgraduate academic degree awarded after the completion of + a program of one to three years in duration. This acknowledgment comprises + about 4-6 years of university study in total with a professional engineering + discipline that deals with the construction and design of public and private + sector works such as bridges, roads, dams and buildings. + Handle: MCE + Origin: caDSR + Value: MCE + MD: + Code: '2573118' + Definition: 'The Doctor of Medicine degree is the first-professional postgraduate + degree that requires completion of a program that meets all of the following + criteria: completion of the academic requirements to begin practice in + the profession; at least 2 years of college work prior to entering the + program; and a total of at least 6 academic years of college work to complete + a program of studies in any branch of medical science, including prior + required college work plus the length of the professional program itself. + The academic standard is equivalent to Ph.D. science.' + Handle: MD + Origin: caDSR + Value: MD + MDI: + Code: '2713432' + Definition: A master's degree in religion. + Handle: MDI + Origin: caDSR + Value: MDI + ME: + Code: '2713429' + Definition: A master's degree in engineering awarded after the completion + of a program of one to three years in duration. This acknowledgment comprises + about 4-6 years of university study in total with a focus in the field + of engineering. + Handle: ME + Origin: caDSR + Value: ME + MEE: + Code: '2713427' + Definition: A master's degree in electrical engineering awarded after the + completion of a program of one to three years in duration. This acknowledgment + comprises about 4-6 years of university study in total with a focus on + an engineering discipline that deals with the study and/or application + of electricity, electronics and electromagnetism. + Handle: MEE + Origin: caDSR + Value: MEE + MEX: + Code: '14532371' + Definition: A minimal base ASCII file format to facilitate the exchange of + data matrices. + Handle: MEX + Origin: caDSR + Value: MEX + MEd: + Code: '2713428' + Definition: A master's degree in education awarded after the completion of + a program of one to three years in duration. This acknowledgment comprises + about 4-6 years of university study in total and is a degree conferred + by American and Canadian institutions for educators moving on in their + field. + Handle: MEd + Origin: caDSR + Value: MEd + MFA: + Code: '2713426' + Definition: A master's degree in an area of visual, literary or performing + arts typically requiring two to three years of study beyond the bachelor + level. Coursework is primarily of an applied or performing nature with + the program often culminating in a major work or performance. + Handle: MFA + Origin: caDSR + Value: MFA + MG: + Code: '2582138' + Definition: Imaging examination of the breast by means of x-rays. + Handle: MG + Origin: caDSR + Value: MG + MHSA: + Code: '2713759' + Definition: Master of Health Services Administration is a master's degree + in health administration and health care management. + Handle: MHSA + Origin: caDSR + Value: MHSA + MME: + Code: '2713425' + Definition: A master's degree in mechanical engineering awarded after the + completion of a program of one to three years in duration. This acknowledgment + comprises about 4-6 years of university study in total with the focus + on an engineering discipline that involves the application of principles + of physics for analysis, design, manufacturing, and maintenance of mechanical + systems. + Handle: MME + Origin: caDSR + Value: MME + MPA: + Code: '2713424' + Definition: A master's degree that focuses on public administration at the + local, state/provincial, national/federal and supranational levels, as + well as in the nonprofit sector. + Handle: MPA + Origin: caDSR + Value: MPA + MPEG-4: + Code: '11422141' + Definition: A multimedia file that is commonly used to store video and audio + data. + Handle: MPEG-4 + Origin: caDSR + Value: MPEG-4 + MPH: + Code: '2713758' + Definition: The Master's of Public Health is an academic degree awarded to + graduates who have completed a program of studies in public health that + usually address human population health, community program administration, + research, and health policy development. + Handle: MPH + Origin: caDSR + Value: MPH + MR: + Code: '2582120' + Definition: Imaging that uses radiofrequency waves and a strong magnetic field + rather than x-rays to provide detailed pictures of internal organs and + tissues. The technique is valuable for the diagnosis of many pathologic + conditions, including cancer, heart and vascular disease, stroke, and + joint and musculoskeletal disorders. + Handle: MR + Origin: caDSR + Value: MR + MS: + Code: '2576333' + Definition: Magnetic Resonance Spectroscopy + Handle: MS + Origin: caDSR + Value: MS + MSL: + Code: '2713423' + Definition: A postgraduate academic degree awarded after the completion of + a program of one to three years in duration. This acknowledgment comprises + about 4-6 years of university study in total with a focus on law. + Handle: MSL + Origin: caDSR + Value: MSL + MSN: + Code: '2713422' + Definition: An advanced-level quaternary education degree for Registered Nurses + focusing in one or more different advanced nursing specialties. It is + required to become an advanced practice nurse and is considered an entry-level + degree for nurse educators and managers. It is also a prerequisite for + doctorate-level nursing education. + Handle: MSN + Origin: caDSR + Value: MSN + MSW: + Code: '2713446' + Definition: An advanced academic degree in the field of social work which + is received from a graduate school that has been approved by the Council + on Social Work Education. The MSW requires two years of post graduate + study, in combination with one year's internship, also called field experience. + Handle: MSW + Origin: caDSR + Value: MSW + MT: + Code: '2713445' + Definition: An advanced academic degree which is sometimes earned after (or + instead of) a Master of Divinity or a Master of Theological Studies. This + degree can range from a one or two year degree (30-60 credit hours) in + general theological studies all the way up to a four year degree (120 + credit hours) which offers specialized advanced studies in theological + research. + Handle: MT + Origin: caDSR + Value: MT + Magnetic Resonance Imaging Study File: + Code: '5612304' + Definition: Imaging that uses radiofrequency waves and a strong magnetic field + rather than x-rays to provide amazingly clear and detailed pictures of + internal organs and tissues. The technique is valuable for the diagnosis + of many pathologic conditions, including cancer, heart and vascular disease, + stroke, and joint and musculoskeletal disorders. + Handle: Magnetic Resonance Imaging Study File + Origin: caDSR + Value: Magnetic Resonance Imaging Study File + Mail Contact: + Code: '2578784' + Definition: The person who is responsible for correspondence handled in a + postal system, such as letters and packages. + Handle: Mail Contact + Origin: caDSR + Value: Mail Contact + Mail Contact (Mgr): + Code: '2573697' + Definition: The person who is responsible for correspondence handled in a + postal system, such as letters and packages. + Handle: Mail Contact (Mgr) + Origin: caDSR + Value: Mail Contact (Mgr) + Mail to contact: + Code: '2573712' + Definition: A person to whom mail is to be sent. + Handle: Mail to contact + Origin: caDSR + Value: Mail to contact + Maintainer: + Code: '2638255' + Definition: A person or organization who performs all program coding after + initial deployment to correct coding errors, enhance the functionality + of the software, and perfect the functioning of the software. + Handle: Maintainer + Origin: caDSR + Value: Maintainer + Male: + Code: '2567171' + Definition: A person who belongs to the sex that normally produces sperm. + The term is used to indicate biological sex distinctions, cultural gender + role distinctions, or both. + Handle: Male + Origin: caDSR + Value: Male + Marijuana Smoke Exposure: + Code: '11167651' + Definition: Environmental, occupational or consumer-based exposure to airborne + gases and particulates produced by direct or nearby use of a vaporized + or combusted product made from the leaves and flowers of the cannabis + plant. + Handle: Marijuana Smoke Exposure + Origin: caDSR + Value: Marijuana Smoke Exposure + Medical Monitor: + Code: '2578782' + Definition: Person employed by the sponsor or clinical research organization, + who is responsible for determining that a clinical study is being conducted + in accordance with the protocol. A monitor's duties may include, but are + not limited to, helping to plan and initiate a trial, assessing the conduct + of trial, assisting in data analysis, interpretation, and extrapolation. + Monitor has medical authority for the checking data and documentation + from the trial and for the evaluation of its safety aspects. + Handle: Medical Monitor + Origin: caDSR + Value: Medical Monitor + Medical Oncologist: + Code: '2833457' + Definition: (on-KOL-o-jist) A doctor who specializes in diagnosing and treating + cancer using chemotherapy, hormonal therapy, and biological therapy. A + medical oncologist often is the main caretaker of someone who has cancer + and coordinates treatment provided by other specialists. + Handle: Medical Oncologist + Origin: caDSR + Value: Medical Oncologist + Medical Physicist: + Code: '2578800' + Definition: A healthcare professional or scientist with knowledge and competence + in health physics including but not limited to nuclear medicine, radiotherapy, + radiology and various aspects of physiological monitoring and investigation. + Handle: Medical Physicist + Origin: caDSR + Value: Medical Physicist + Miss: + Code: '2565677' + Definition: A courtesy title for an unmarried woman. + Handle: Miss + Origin: caDSR + Value: Miss + Mr.: + Code: '2567791' + Definition: A courtesy title for a man. + Handle: Mr. + Origin: caDSR + Value: Mr. + Mrs.: + Code: '2675062' + Definition: A courtesy title prefixed to the name of a married woman. + Handle: Mrs. + Origin: caDSR + Value: Mrs. + Ms.: + Code: '2567792' + Definition: A courtesy title used before the name of a woman without making + a distinction between married and unmarried status. + Handle: Ms. + Origin: caDSR + Value: Ms. + Multiple Organ Failure: + Code: '2768995' + Definition: A progressive condition usually characterized by combined failure + of the lungs, liver, kidney, and clotting mechanisms. + Handle: Multiple Organ Failure + Origin: caDSR + Value: Multiple Organ Failure + Myocardial infarction: + Code: '2569449' + Definition: Gross necrosis of the myocardium, as a result of interruption + of the blood supply to the area. (Dorland, 27th ed) + Handle: Myocardial infarction + Origin: caDSR + Value: Myocardial infarction + NCBI (By Reference): + Code: '14753627' + Definition: Established in 1988 as a national resource for molecular biology + information, NCBI creates public databases, conducts research in computational + biology, develops software tools for analyzing genome data, and disseminates + biomedical information - all for the better understanding of molecular + processes affecting human health and disease. + Handle: NCBI (By Reference) + Origin: caDSR + Value: NCBI (By Reference) + ND: + Code: '2713756' + Definition: The Naturopathic Doctor (N.D.) degree is a degree awarded for + graduates who have completed a medical doctoral program in accredited + school. N.D. has a qualification of primary care physicians with a specialized + focus in preventative medicine, natural therapeutics, and emphasis on + holistic and nontoxic approaches to therapy and optimizing wellness. + Handle: ND + Origin: caDSR + Value: ND + NIFTI Format: + Code: '11422144' + Definition: An open file format used to store neuroscience and neuroradiology + imaging data obtained by MRI. The raw image data in NIfTI is saved as + a 3d image. + Handle: NIFTI Format + Origin: caDSR + Value: NIFTI Format + NM: + Code: '12103506' + Definition: An imaging technique that uses a small dose of a radioactive chemical + (isotope) called a tracer that can detect sites of cancer growth, trauma, + infection or degenerative disorders. The tracer, which is either injected + into a vein or swallowed, travels through the bloodstream to the target + organ, and emits gamma rays, which are detected by a gamma camera and + analyzed by a computer to form an image of the target organ. + Handle: NM + Origin: caDSR + Value: NM + Native Hawaiian or other Pacific Islander: + Code: '2572235' + Definition: Denotes a person having origins in any of the original peoples + of Hawaii, Guam, Samoa, or other Pacific Islands. The term covers particularly + people who identify themselves as part-Hawaiian, Native Hawaiian, Guamanian + or Chamorro, Carolinian, Samoan, Chuukese (Trukese), Fijian, Kosraean, + Melanesian, Micronesian, Northern Mariana Islander, Palauan, Papua New + Guinean, Pohnpeian, Polynesian, Solomon Islander, Tahitian, Tokelauan, + Tongan, Yapese, or Pacific Islander, not specified. + Handle: Native Hawaiian or other Pacific Islander + Origin: caDSR + Value: Native Hawaiian or other Pacific Islander + Natural causes: + Code: '3837948' + Definition: 'A description for something that exists in or is produced by + nature, and is not artificial or man-made.: The circumstance or condition + that results in the death of a living being.' + Handle: Natural causes + Origin: caDSR + Value: Natural causes + Neuropathologist: + Code: '2576287' + Definition: A physician with specialized training and expertise in the diagnosis + of diseases of the brain and nervous system by microscopic evaluation + of the tissue. + Handle: Neuropathologist + Origin: caDSR + Value: Neuropathologist + New Tumor Event: + Code: '14473337' + Definition: The presence of a primary, recurrent or metastatic neoplasm which + has not been previously noted. + Handle: New Tumor Event + Origin: caDSR + Value: New Tumor Event + 'No': + Code: '5697866' + Definition: The non-affirmative response to a question. + Handle: 'No' + Origin: caDSR + Value: 'No' + Non-protocol cancer therapy: + Code: '3837947' + Definition: 'Treatment not specified in a protocol.: Any intervention for + management of a malignant neoplasm.' + Handle: Non-protocol cancer therapy + Origin: caDSR + Value: Non-protocol cancer therapy + None of these describe me: + Code: '7554789' + Definition: A response indicating that an individual feels that no option + listed is a good description for them. + Handle: None of these describe me + Origin: caDSR + Value: None of these describe me + Normal: + Code: '14741231' + Definition: Tissue sample with cellular composition and architectural patterns + expected for the particular anatomic site in which it belongs. There is + no evidence of abnormal cellular infiltrates or tumor mass formation. + Handle: Normal + Origin: caDSR + Value: Normal + Not Allowed To Collect: + Code: '6662191' + Definition: An indicator that specifies that a collection event was not permitted. + Handle: Not Allowed To Collect + Origin: caDSR + Value: Not Allowed To Collect + Not Applicable: + Code: '7590024' + Definition: Determination of a value is not relevant in the current context. + Handle: Not Applicable + Origin: caDSR + Value: Not Applicable + Not Cancer Related: + Code: '7642107' + Definition: A death attributed to any cause other than the progression of + a cancer-related pathologic condition. + Handle: Not Cancer Related + Origin: caDSR + Value: Not Cancer Related + Not Hispanic or Latino: + Code: '2567110' + Definition: A person not of Cuban, Mexican, Puerto Rican, South or Central + American, or other Spanish culture or origin, regardless of race. + Handle: Not Hispanic or Latino + Origin: caDSR + Value: Not Hispanic or Latino + Not Reported: + Code: '5612322' + Definition: Not provided or available. + Handle: Not Reported + Origin: caDSR + Value: Not Reported + Not allowed to collect: + Code: '6662191' + Definition: An indicator that specifies that a collection event was not permitted. + Handle: Not allowed to collect + Origin: caDSR + Value: Not allowed to collect + Not reported: + Code: '2572578' + Definition: Not provided or available. + Handle: Not reported + Origin: caDSR + Value: Not reported + Nurse: + Code: '2570501' + Definition: A health professional trained to care for people who are ill or + disabled. + Handle: Nurse + Origin: caDSR + Value: Nurse + Nurse Coach: + Code: '7607365' + Definition: A registered nurse with specialized training in peer and/or health + and wellness coaching that provides guidance and resources to patients, + colleagues, or institutions towards making positive changes and achieving + goals. + Handle: Nurse Coach + Origin: caDSR + Value: Nurse Coach + Nurse Practitioner: + Code: '2668461' + Definition: A registered nurse (RN) with advanced training in diagnosing and + treating illness. NPs are master's degree prepared health experts that + focus on helping patients achieve total health and prevent disease. NPs + focus on disease prevention, wellness, and patient education. NPs prescribe + medications, treat illness, and perform physical examinations. NPs can + function independently of physician intervention, but require a practice + agreement with a physician. + Handle: Nurse Practitioner + Origin: caDSR + Value: Nurse Practitioner + OAM: + Code: '12057574' + Definition: A method for determining the axial length of the eye. + Handle: OAM + Origin: caDSR + Value: OAM + OBIB (By Reference): + Code: '14428019' + Definition: An ontology designed for describing biobank specimens as well + as the information required for modeling the activities and administration + of a biobank. + Handle: OBIB (By Reference) + Origin: caDSR + Value: OBIB (By Reference) + OCT: + Code: '6413980' + Definition: Optical Coherence Tomography (OCT) combines the principles of + ultrasound with the imaging performance of a microscope. OCT uses infrared + light waves that reflect off the internal microstructure within the biological + tissues. The frequencies and bandwidths of infrared light are orders of + magnitude higher than medical ultrasound signals, resulting in greatly + increased image resolution, 8-25 times greater than any existing modality. + In addition to providing high-level resolutions for the evaluation of + microanatomic structures OCT is also able to provide information regarding + tissue composition. + Handle: OCT + Origin: caDSR + Value: OCT + OD: + Code: '2713755' + Definition: The Doctor of Optometry degree is the first-professional, postgraduate + degree awarded to the graduates who have completed a specialized four + year post-baccalaureate professional program in order to become independent + health care providers who examine, diagnose, treat, and manage disorders + of the visual systems and diseases of the eye and associated structures. + Handle: OD + Origin: caDSR + Value: OD + OME-TIFF: + Code: '11422196' + Definition: A tagged image file format (TIFF) image file format that contains + an Open Microscopy Environment (OME) XML metadata block in the file header + for storing microscopy information (pixels and metadata) using the OME + Data Model. + Handle: OME-TIFF + Origin: caDSR + Value: OME-TIFF + OP: + Code: '2582151' + Definition: Photography used to study and document structures and disorders + of the eye. + Handle: OP + Origin: caDSR + Value: OP + OPM: + Code: '12057575' + Definition: Methods for determining the topography or thickness of parts of + the eye. + Handle: OPM + Origin: caDSR + Value: OPM + OPT: + Code: '12057576' + Definition: The use of optical coherence tomography to obtain images of the + eye. + Handle: OPT + Origin: caDSR + Value: OPT + OPTBSV: + Code: '12057577' + Definition: An assessment of ocular anatomy as well as any lesions that may + be present within the eye that utilizes optical coherence tomography at + frequencies of 10 MHz or higher. + Handle: OPTBSV + Origin: caDSR + Value: OPTBSV + OPTENF: + Code: '12057578' + Definition: An imaging technique that combines spectral-domain optical coherence + tomography with transverse confocal analysis, producing transverse images + of retinal and choroidal layers at a specified depth. + Handle: OPTENF + Origin: caDSR + Value: OPTENF + OPV: + Code: '7463355' + Definition: An eye examination technique that utilizes test objects with gradually + increasing luminance that are positioned at fixed locations across the + visual field to determine the threshold of visibility. + Handle: OPV + Origin: caDSR + Value: OPV + OSS: + Code: '12057579' + Definition: A device designed for continuous and touchless optical surface + scanning of a patient's external surfaces for accurate patient positioning. + Handle: OSS + Origin: caDSR + Value: OSS + OT: + Code: '2559653' + Definition: Different than the one(s) previously specified or mentioned. + Handle: OT + Origin: caDSR + Value: OT + Oncology Nurse: + Code: '2833456' + Definition: A nurse who specializes in treating and caring for people who + have cancer. + Handle: Oncology Nurse + Origin: caDSR + Value: Oncology Nurse + Organ failure, not otherwise specified: + Code: '2768994' + Definition: 'A part of the body that performs a specific function. For example, + the heart is an organ.: loss of ability to function normally.: Not characterized + in any other way.' + Handle: Organ failure, not otherwise specified + Origin: caDSR + Value: Organ failure, not otherwise specified + Other cause: + Code: '2762648' + Definition: 'Not otherwise specified.: An explanation of the cause of some + phenomenon or action.' + Handle: Other cause + Origin: caDSR + Value: Other cause + PCP: + Code: '2833540' + Definition: A medical professional who provides, coordinates, or helps a patient + access a range of health care services. This is usually a medical doctor + (MD), but may also be a Doctor of Osteopathic Medicine, nurse practitioner, + clinical nurse specialist, or physician assistant, as allowed under state + law. + Handle: PCP + Origin: caDSR + Value: PCP + PDF: + Code: '2967828' + Definition: An open file format created and controlled by Adobe Systems, for + representing two-dimensional documents in a device independent and resolution + independent fixed-layout document format. Each PDF file encapsulates a + complete description of a 2D document that includes the text, fonts, images, + and 2D vector graphics that compose the document. PDF files do not encode + information that is specific to the application software, hardware, or + operating system used to create or view the document. This feature ensures + that a valid PDF will render exactly the same regardless of its origin + or destination (but depending on font availability when fonts are not + encapsulated in the file). + Handle: PDF + Origin: caDSR + Value: PDF + PLAN: + Code: '2571012' + Definition: Planned; devised, contrived, or formed in design. + Handle: PLAN + Origin: caDSR + Value: PLAN + PMB Drug Company Contact: + Code: '2578787' + Definition: The drug company employee who is authorized to serve as a primary + contact between the company and NCI CTEP Pharmaceutical Management Branch + (PMB) regarding pharmaceutical issues (drug acquisition, quality, supply, + inventory management, distribution, etc.) pertaining to the investigational + agent utilized in the NCI-sponsored clinical trial. + Handle: PMB Drug Company Contact + Origin: caDSR + Value: PMB Drug Company Contact + PNG: + Code: '11422198' + Definition: An extensible file format for lossless data compression of images. + Handle: PNG + Origin: caDSR + Value: PNG + POS: + Code: '12057580' + Definition: A sensor designed to measure the location or orientation of a + person as compared to a reference point. + Handle: POS + Origin: caDSR + Value: POS + PR: + Code: '2582144' + Definition: An independent DICOM SOP Instance that contains information on + how a particular image should be displayed. The Presentation State may + contain label information (types of Label and Positions), windowing values, + zoom value, scrolling (panning) values, rotations or any other visual + display element that is defined within the DICOM standard. + Handle: PR + Origin: caDSR + Value: PR + PT: + Code: '2581621' + Definition: A technique for measuring the gamma radiation produced by collisions + of electrons and positrons (anti-electrons) within living tissue. In positron + emission tomography (PET), a subject is given a dose of a positron-emitting + radionuclide attached to a metabolically active substance (for example, + 2-fluoro-2-deoxy-D-glucose (FDG), which is similar to a naturally occurring + sugar, glucose, with the addition of a radioactive fluorine atom). When + living tissue containing the positron emitter is bombarded by electrons, + gamma radiation produced by collisions of electrons and positrons is detected + by a scanner, revealing in fine detail the tissue location of the metabolically-active + substance administered. + Handle: PT + Origin: caDSR + Value: PT + PX: + Code: '2582140' + Definition: A panoramic or wide-view x-ray of the upper and lower jaw and + teeth. + Handle: PX + Origin: caDSR + Value: PX + Pap Smear: + Code: '2926792' + Definition: 'A biospecimen collection and staining procedure in which secretions + and superficial cells of the cervix are collected and stained with the + Papanicolaou stain followed by microscopic examination to identify the + presence of abnormal cells. ' + Handle: Pap Smear + Origin: caDSR + Value: Pap Smear + Parkinson's Disease: + Code: '3604284' + Definition: A progressive degenerative disorder of the central nervous system + characterized by loss of dopamine producing neurons in the substantia + nigra and the presence of Lewy bodies in the substantia nigra and locus + coeruleus. Signs and symptoms include tremor which is most pronounced + during rest, muscle rigidity, slowing of the voluntary movements, a tendency + to fall back, and a mask-like facial expression. + Handle: Parkinson's Disease + Origin: caDSR + Value: Parkinson's Disease + Participant: + Code: '2569287' + Definition: Someone who takes part in an activity. + Handle: Participant + Origin: caDSR + Value: Participant + Participant Chief: + Code: '2578783' + Definition: The head of a body of persons who takes part in an activity. + Handle: Participant Chief + Origin: caDSR + Value: Participant Chief + Pathologic Review: + Code: '6413969' + Definition: An assessment of disease process to include cause, development, + and/or structural and functional changes associated with the disease. + Handle: Pathologic Review + Origin: caDSR + Value: Pathologic Review + Patient: + Code: '2559728' + Definition: A person who receives medical attention, care, or treatment, or + who is registered with medical professional or institution with the purpose + to receive medical care when necessary. + Handle: Patient + Origin: caDSR + Value: Patient + Peritumoral: + Code: '13332906' + Definition: A specimen comprised of morphologically normal tissue collected + from the area immediately surrounding a tumor in an experimental subject. + Handle: Peritumoral + Origin: caDSR + Value: Peritumoral + Persistence or recurrence of underlying disease: + Code: '3837946' + Definition: 'A disease that does not go to remission despite treatment.: An + article used to connect words, phrases, or clauses representing alternatives; + used to connect alternative terms for the same thing; used in correlation; + used to correct or rephrase what was previously said; otherwise.: The + return of a disease after a period of remission.' + Handle: Persistence or recurrence of underlying disease + Origin: caDSR + Value: Persistence or recurrence of underlying disease + PhD: + Code: '2573122' + Definition: Doctor of Philosophy + Handle: PhD + Origin: caDSR + Value: PhD + PhE: + Code: '2713444' + Definition: A doctoral degree awarded on the basis of advanced study and research + in engineering. It is awarded by many American universities and is equivalent + to a PhD degree. + Handle: PhE + Origin: caDSR + Value: PhE + PharmD: + Code: '2573123' + Definition: Doctor of Pharmacy + Handle: PharmD + Origin: caDSR + Value: PharmD + Pharmaceutical Liaison: + Code: '2578785' + Definition: A person who initiates and maintains a contact or connection pertaining + to pharmacy. + Handle: Pharmaceutical Liaison + Origin: caDSR + Value: Pharmaceutical Liaison + Pharmacist: + Code: '2570576' + Definition: A person trained in pharmacy that prepares and dispenses drugs + prescribed by physicians and health practitioners. The responsibilities + include instructing patients on the use, hazards, interactions, and side + effects of any drug dispensed. + Handle: Pharmacist + Origin: caDSR + Value: Pharmacist + Pharmacologist: + Code: '2578786' + Definition: A physician, scientist, or healthcare provider that investigates + the mechanisms underlying the effects of drugs and chemicals on biological + or living systems. This knowledge is employed to help design and evaluate + drugs for the prevention and treatment of disease. + Handle: Pharmacologist + Origin: caDSR + Value: Pharmacologist + Pharmacotherapy: + Code: '6118797' + Definition: Treatment of disease through the use of drugs. + Handle: Pharmacotherapy + Origin: caDSR + Value: Pharmacotherapy + Physical Examination: + Code: '2581620' + Definition: A systemic evaluation of the body and its functions using visual + inspection, palpation, percussion and auscultation. The purpose is to + determine the presence or absence of physical signs of disease or abnormality + for an individual's health assessment. + Handle: Physical Examination + Origin: caDSR + Value: Physical Examination + Physician: + Code: '2570579' + Definition: Physician; a licensed medical practitioner. + Handle: Physician + Origin: caDSR + Value: Physician + Physician Assistant: + Code: '2668463' + Definition: A person trained and qualified to provide comprehensive diagnostic, + preventive, and therapeutic medical care and services to patients under + the guidance of the physician. A scope of physician assistant professional + activity does not include the full range of interpretation of medical + findings requiring the full professional background of the licensed physician. + Handle: Physician Assistant + Origin: caDSR + Value: Physician Assistant + Physicist: + Code: '2576288' + Definition: An individual trained and qualified to advise, administer, supervise, + or perform research or other professional and scientific work in the investigation + and application of the relations between space, time, matter, and energy + in the areas of mechanics, sound, optics, heat, electricity, magnetism, + radiation, or atomic and nuclear phenomena. + Handle: Physicist + Origin: caDSR + Value: Physicist + Plain Text Data Format: + Code: '11422197' + Definition: A data format consisting of readable textual material maintained + as a sequential file. + Handle: Plain Text Data Format + Origin: caDSR + Value: Plain Text Data Format + Pneumonia NOS: + Code: '3837945' + Definition: 'Not characterized in any other way.: Inflammation of the lungs.' + Handle: Pneumonia NOS + Origin: caDSR + Value: Pneumonia NOS + Population Member: + Code: '2576289' + Definition: An individual of a group united by a common factor; a person in + a defined cohort or group of people. + Handle: Population Member + Origin: caDSR + Value: Population Member + Practitioner: + Code: '2576290' + Definition: A person engaged in the work of a profession or occupation. + Handle: Practitioner + Origin: caDSR + Value: Practitioner + Practitioner Assigned: + Code: '2576291' + Definition: A person professionally engaged medical practice who is appointed + to a post or duties. + Handle: Practitioner Assigned + Origin: caDSR + Value: Practitioner Assigned + Prefer not to answer: + Code: '5684650' + Definition: A response indicating that an individual prefers or preferred + not to answer. + Handle: Prefer not to answer + Origin: caDSR + Value: Prefer not to answer + Primary CDUS Contact: + Code: '2573708' + Definition: A primary person within the Cooperative Group, institution, clinical + site, or/and particular study that is responsible for the clinical trial + data completion and submission to NCI via Clinical Data Update System + (CDUS). + Handle: Primary CDUS Contact + Origin: caDSR + Value: Primary CDUS Contact + Primary Shipping Designee: + Code: '2578788' + Definition: The principal person of contact who denotes where and to whom + pharmaceuticals are to be shipped. The person of contact is assigned by + the principal investigator and registered with the NCI CTEP Pharmaceutical + Management Branch (PMB) as with a distributor of (investigational new + drugs (INDs) for all NCI-sponsored trials. In addition, this person is + authorized to place orders for investigational agents with PMB, requests + drug transfers, and maintains drug inventory documentation at the clinical + site. Investigational agents are shipped from the PMB directly to the + institution or the investigator's practice site where the agent will be + prepared and administered. + Handle: Primary Shipping Designee + Origin: caDSR + Value: Primary Shipping Designee + Primary care physician: + Code: '2833540' + Definition: A medical professional who provides, coordinates, or helps a patient + access a range of health care services. This is usually a medical doctor + (MD), but may also be a Doctor of Osteopathic Medicine, nurse practitioner, + clinical nurse specialist, or physician assistant, as allowed under state + law. + Handle: Primary care physician + Origin: caDSR + Value: Primary care physician + Principal Investigator: + Code: '2576268' + Definition: An investigator who is responsible for all aspects of the conduct + of a study. + Handle: Principal Investigator + Origin: caDSR + Value: Principal Investigator + Principal Investigator (MGR): + Code: '2573711' + Definition: An investigator who is responsible for all aspects of the conduct + of a study. + Handle: Principal Investigator (MGR) + Origin: caDSR + Value: Principal Investigator (MGR) + Prior malignancy: + Code: '2774527' + Definition: 'Earlier in time or order.: A tumor composed of atypical neoplastic, + often pleomorphic cells that invade other tissues. Malignant neoplasms + usually metastasize to distant anatomic sites and may recur after excision. The + most common malignant neoplasms are carcinomas (adenocarcinomas or squamous + cell carcinomas), Hodgkin''s and non-Hodgkin''s lymphomas, leukemias, + melanomas, and sarcomas. -- 2004' + Handle: Prior malignancy + Origin: caDSR + Value: Prior malignancy + Prof.: + Code: '2581629' + Definition: A courtesy title for a teacher of the highest academic rank in + a college or university. + Handle: Prof. + Origin: caDSR + Value: Prof. + Program Director: + Code: '2578789' + Definition: A professional who holds a leadership administrative, research, + or academic position within a scientific program. A program director is + responsible for the overall direction in the conduct of research; provision + and coordination of training and education; operations, staffing, and + maintenance of research facilities; development of new research activities; + developing and maintaining relationships with other agencies, programs, + scientific centers and departments, as well as with communities. + Handle: Program Director + Origin: caDSR + Value: Program Director + Program Specialist: + Code: '2573717' + Definition: A professional with expertise in a scientific discipline, that + can provide insight and advice to the program staff. + Handle: Program Specialist + Origin: caDSR + Value: Program Specialist + Project Coordinator: + Code: '2578790' + Definition: A staff member who is responsible for the overall integration + and interaction of different people and different components of subject + matter associated with a specific project. + Handle: Project Coordinator + Origin: caDSR + Value: Project Coordinator + Project Officer: + Code: '2573718' + Definition: A staff member who coordinates the substantive aspects of a contract + from planning a request for proposals to oversight after award. + Handle: Project Officer + Origin: caDSR + Value: Project Officer + Protocol Author: + Code: '2576267' + Definition: A person who is the writer of a structured research study. + Handle: Protocol Author + Origin: caDSR + Value: Protocol Author + Protocol Chair: + Code: '2578791' + Definition: A person at the primary location of research that retains the + responsibility for regulation compliance and ensures the proper administration + of the objectives, study design, and methodology of study. + Handle: Protocol Chair + Origin: caDSR + Value: Protocol Chair + Protocol Chair at an Organization: + Code: '2573698' + Definition: A person at a business or administrative group that retains the + responsibility for regulation compliance and ensures the proper administration + of the objectives, study design, and methodology of study. + Handle: Protocol Chair at an Organization + Origin: caDSR + Value: Protocol Chair at an Organization + Protocol Lead Investigator: + Code: '2578792' + Definition: Primary clinical researcher of a clinical trial, ultimately responsible + for all aspects in the conduct of a study, but has special responsibility + with regard to the implementation and administration of the study design, + and methodology of a trial. + Handle: Protocol Lead Investigator + Origin: caDSR + Value: Protocol Lead Investigator + Protocol Review Chair: + Code: '2573719' + Definition: The presiding officer of a meeting, organization, or committee + that is responsible for the analysis and evaluation of the detailed plan + that sets forth the objectives, study design, and methodology for a clinical + trial. + Handle: Protocol Review Chair + Origin: caDSR + Value: Protocol Review Chair + Protocol Specialist: + Code: '2578793' + Definition: A staff member assigned primary responsibility for fulfilling + core responsibilities for a specific study. Manages the protocol development + and review process, working closely with the Protocol Chair and the study + team to develop the protocol and prepare responses. Coordinates the protocol + development and study implementation teams throughout study development + and conduct. + Handle: Protocol Specialist + Origin: caDSR + Value: Protocol Specialist + Proton Beam Radiation Therapy: + Code: '3287226' + Definition: A type of external beam radiation therapy using a beam of protons. + It has the advantage of precisely localizing the radiation dose on the + targeted tissue and avoiding damage to the healthy surrounding tissues. + Handle: Proton Beam Radiation Therapy + Origin: caDSR + Value: Proton Beam Radiation Therapy + Protozoal infection: + Code: '2573841' + Definition: Infections with unicellular organisms of the subkingdom PROTOZOA. + Handle: Protozoal infection + Origin: caDSR + Value: Protozoal infection + Pulmonary Disease: + Code: '5054452' + Definition: A non-neoplastic or neoplastic disorder affecting the lung. Representative + examples of non-neoplastic disorders include chronic obstructive pulmonary + disease and pneumonia. Representative examples of neoplastic disorders + include benign processes (e.g., respiratory papilloma) and malignant processes + (e.g., lung carcinoma and metastatic cancer to the lung). + Handle: Pulmonary Disease + Origin: caDSR + Value: Pulmonary Disease + Pulmonary Embolism: + Code: '2770974' + Definition: The closure of the pulmonary artery or one of its branches by + an embolus, sometimes associated with infarction of the lung. + Handle: Pulmonary Embolism + Origin: caDSR + Value: Pulmonary Embolism + Pulmonary failure: + Code: '2768984' + Definition: 'Relating to the lungs.: loss of ability to function normally.' + Handle: Pulmonary failure + Origin: caDSR + Value: Pulmonary failure + Pulmonary hemorrhage: + Code: '2750111' + Definition: 'Relating to the lungs.: Bleeding or escape of blood from a vessel.' + Handle: Pulmonary hemorrhage + Origin: caDSR + Value: Pulmonary hemorrhage + Python Script Format: + Code: '11422199' + Definition: A plain text file that stores python code. + Handle: Python Script Format + Origin: caDSR + Value: Python Script Format + R File Format: + Code: '11422200' + Definition: A file format used for writing scripts in the R programming language + for execution within the R software environment, typically for statistical + computation and graphics. + Handle: R File Format + Origin: caDSR + Value: R File Format + R Markdown: + Code: '11422201' + Definition: A file format for making dynamic documents written in R. It is + written in plain text format and contains chunks of embedded R code. + Handle: R Markdown + Origin: caDSR + Value: R Markdown + R.: + Code: '2573584' + Definition: A courtesy title of respect for the leader of a Jewish congregation, + the chief religious official of a synagogue, or a Jewish scholar or teacher. + Handle: R. + Origin: caDSR + Value: R. + REG: + Code: '12057582' + Definition: The process of transforming sets of image data from different + times or perspectives into one coordinate system. + Handle: REG + Origin: caDSR + Value: REG + RESP: + Code: '12057587' + Definition: A graphical representation of the breathing pattern in a patient. + Handle: RESP + Origin: caDSR + Value: RESP + RF: + Code: '2582130' + Definition: Examination of the tissues and deep structures of the body by + x-ray, using the fluoroscope, a device that produces an image when x-rays + strike a fluorescent screen. + Handle: RF + Origin: caDSR + Value: RF + RG: + Code: '2582126' + Definition: A radiographic procedure using the emission of x-rays to form + an image of the structure penetrated by the radiation. + Handle: RG + Origin: caDSR + Value: RG + RTDOSE: + Code: '2582133' + Definition: The amount of radiation administered during a therapy session. + Handle: RTDOSE + Origin: caDSR + Value: RTDOSE + RTIMAGE: + Code: '2582132' + Definition: An image produced on a radiosensitive surface by x-ray radiation + that has penetrated and passed through a structure. + Handle: RTIMAGE + Origin: caDSR + Value: RTIMAGE + RTPLAN: + Code: '2582135' + Definition: The design for radiation therapy. + Handle: RTPLAN + Origin: caDSR + Value: RTPLAN + RTRECORD: + Code: '2582136' + Definition: A record generated from radiation therapy. + Handle: RTRECORD + Origin: caDSR + Value: RTRECORD + RTSTRUCT: + Code: '2582134' + Definition: An object of the DICOM standard used for the transfer of patient + structures and related data defined on CT scanners, virtual simulation + workstations, treatment planning systems and similar devices. + Handle: RTSTRUCT + Origin: caDSR + Value: RTSTRUCT + RWV: + Code: '12057589' + Definition: The representation of the stored pixel values of referenced images + into some Real World value in defined units. This allows the capture of + retrospectively determined mappings, e.g., for values that cannot be determined + at the time of image acquisition and encoding. + Handle: RWV + Origin: caDSR + Value: RWV + Radiation Exposure: + Code: '6607858' + Definition: 'Exposure to radioactive materials or ionizing radiation, whether + by external irradiation, contact or contamination with radioactive material, + or incorporation of radioactive materials, as in the case of certain diagnostic + procedures. ' + Handle: Radiation Exposure + Origin: caDSR + Value: Radiation Exposure + Radiation IP: + Code: '3854250' + Definition: "Treatment of a disease by means of exposure of the target or + the whole body to radiation. Radiation therapy is often used as part + of curative therapy and occasionally as a component of palliative treatment + for cancer. Other uses include total body irradiation prior to transplantation.: + Inflammation of interstitial lung tissue, usually associated with infection.\r + \n" + Handle: Radiation IP + Origin: caDSR + Value: Radiation IP + Radiation Oncologist: + Code: '2576269' + Definition: (ray-dee-AY-shun on-KOL-o-jist) A doctor who specializes in using + radiation to treat cancer. + Handle: Radiation Oncologist + Origin: caDSR + Value: Radiation Oncologist + Radiation Therapy: + Code: '3588318' + Definition: Treatment of a disease by means of exposure of the target or the + whole body to radiation. Radiation therapy is often used as part of curative + therapy and occasionally as a component of palliative treatment for cancer. + Other uses include total body irradiation prior to transplantation. + Handle: Radiation Therapy + Origin: caDSR + Value: Radiation Therapy + Radiofrequency Ablation: + Code: '3029158' + Definition: A therapeutic procedure to eradicate or reduce small tumors using + radiowaves to generate heat. The procedure is performed by the insertion + of a thin needle through the skin and into a tumor, which is guided by + computed tomography (CT) or ultrasound. Electrical energy delivered through + this needle (electrode) heats and destroys the tumor. This therapeutic + option is widely utilized by patients that have inoperable cancers, or + are unsuitable chemotherapy candidates. + Handle: Radiofrequency Ablation + Origin: caDSR + Value: Radiofrequency Ablation + Radon Exposure: + Code: '11167653' + Definition: Inhalation of radon gas which is found in rocks, soil and groundwater + as a result of radioactive decay of uranium, thorium, or radium in the + environment. + Handle: Radon Exposure + Origin: caDSR + Value: Radon Exposure + Recurrence/persistence/progression of disease reported for first HSCT: + Code: '2768983' + Definition: 'To come back or to return.: Retained; never-ceasing.: Cancer + that is increasing in scope or severity.' + Handle: Recurrence/persistence/progression of disease reported for first HSCT + Origin: caDSR + Value: Recurrence/persistence/progression of disease reported for first HSCT + Referring Pathologist: + Code: '2578794' + Definition: A pathologist that directs a patient to an additional source of + medical expertise for assistance, examination, information, or treatment. + Handle: Referring Pathologist + Origin: caDSR + Value: Referring Pathologist + Referring Physician: + Code: '2569167' + Definition: A physician that directs a patient to an additional source of + medical expertise for assistance, examination, information, or treatment. + Handle: Referring Physician + Origin: caDSR + Value: Referring Physician + Regional: + Code: '2971661' + Definition: A disease or condition that extends beyond the site and spreads + into adjacent tissues and regional lymph nodes. + Handle: Regional + Origin: caDSR + Value: Regional + Regional Disease: + Code: '2971661' + Definition: A disease or condition that extends beyond the site and spreads + into adjacent tissues and regional lymph nodes. + Handle: Regional Disease + Origin: caDSR + Value: Regional Disease + Registrar: + Code: '2576272' + Definition: Registrar; someone responsible for keeping records. + Handle: Registrar + Origin: caDSR + Value: Registrar + Registration Coordinator: + Code: '2578795' + Definition: A person that is responsible for the integration and collation + of subject information and participation throughout the duration of the + clinical trial, and subsequent follow-up. + Handle: Registration Coordinator + Origin: caDSR + Value: Registration Coordinator + Regulatory Coordinator: + Code: '2578796' + Definition: A person that is responsible for ensuring compliance with government + regulations and interacts with the regulatory agencies regarding toxicity, + protocol administration, and drug approval procedures. + Handle: Regulatory Coordinator + Origin: caDSR + Value: Regulatory Coordinator + Renal Disorder, NOS: + Code: '2975595' + Definition: A neoplastic or non-neoplastic condition affecting the kidney. + Representative examples of non-neoplastic conditions include glomerulonephritis + and nephrotic syndrome. Representative examples of neoplastic conditions + include benign processes (e.g., renal lipoma and renal fibroma) and malignant + processes (e.g., renal cell carcinoma and renal lymphoma). + Handle: Renal Disorder, NOS + Origin: caDSR + Value: Renal Disorder, NOS + Renal failure: + Code: '2768982' + Definition: Acute or chronic condition, characterized by the inability of + the kidneys to adequately filter the blood substances, resulting in uremia + and electrolyte imbalances. Acute renal failure is usually associated + with oliguria or anuria, hyperkalemia, and pulmonary edema. Chronic renal + failure is irreversible and requires hemodialysis.--2004 + Handle: Renal failure + Origin: caDSR + Value: Renal failure + Representative Investigator: + Code: '2576270' + Definition: Representative Investigator + Handle: Representative Investigator + Origin: caDSR + Value: Representative Investigator + Research Clinician: + Code: '2576271' + Definition: A physician who is involved in the treatment and observation of + patients as part of a systematic investigation. + Handle: Research Clinician + Origin: caDSR + Value: Research Clinician + Research Nurse: + Code: '2578797' + Definition: A nurse who is involved in the treatment and observation of patients + as part of a systematic investigation. + Handle: Research Nurse + Origin: caDSR + Value: Research Nurse + Research Pathologist: + Code: '2576274' + Definition: Research Pathologist + Handle: Research Pathologist + Origin: caDSR + Value: Research Pathologist + Respirable Crystalline Silica Exposure: + Code: '11167652' + Definition: Environmental, occupational or consumer-based exposure to respirable + particles derived from industrial processing or breakdown of silica-containing + materials such as sand, concrete, stone, mortar, bricks, glass, pottery + and ceramics. + Handle: Respirable Crystalline Silica Exposure + Origin: caDSR + Value: Respirable Crystalline Silica Exposure + Respiratory failure: + Code: '2946095' + Definition: Impaired gas exchange by the respiratory system resulting in hypoxemia + and decreased oxygenation of the tissues that may be associated with increased + arterial levels of carbon dioxide. Causes include chronic obstructive + pulmonary disease, asthma, emphysema, acute respiratory distress syndrome, + pneumonia, pulmonary edema, pneumothorax, and congestive heart failure. + Handle: Respiratory failure + Origin: caDSR + Value: Respiratory failure + Respondent: + Code: '14913143' + Definition: A person in a clinical trial other than the subject who provides + responses about the subject on their behalf, but not as an observer. + Handle: Respondent + Origin: caDSR + Value: Respondent + Rev.: + Code: '2573581' + Definition: A courtesy title of respect applied or prefixed to the name of + a member of the clergy or a religious order. + Handle: Rev. + Origin: caDSR + Value: Rev. + Review Liaison: + Code: '2578798' + Definition: A person that maintains communication between the investigators + that submit funding proposals and the officials in charge of review at + the institution that fund the proposals. + Handle: Review Liaison + Origin: caDSR + Value: Review Liaison + Review Specialist: + Code: '2573720' + Definition: An individual with expertise in one or more scientific disciples + that can evaluate and review scientific data and funding proposals. + Handle: Review Specialist + Origin: caDSR + Value: Review Specialist + Reviewing Pathologist: + Code: '2578801' + Definition: A pathologist that inspects and verifies diagnoses, clinical data, + grant or scientific proposals. + Handle: Reviewing Pathologist + Origin: caDSR + Value: Reviewing Pathologist + Reviewing Radiologist: + Code: '2578799' + Definition: A radiologist that formally inspects and verifies diagnoses, clinical + data, treatment plans, and grant or scientific proposals. + Handle: Reviewing Radiologist + Origin: caDSR + Value: Reviewing Radiologist + SDRF: + Code: '11422202' + Definition: A tab-delimited file describing the relationships between samples, + arrays, data and other objects used or produced during a microarray experiment. + Handle: SDRF + Origin: caDSR + Value: SDRF + SEG: + Code: '2985472' + Definition: The process of assigning a label to every pixel in an image such + that pixels with the same label share certain visual characteristics, + allowing the image to be partitioned into multiple segments (e.g., boundaries, + lines, curves). + Handle: SEG + Origin: caDSR + Value: SEG + SHE Instructor: + Code: '8094007' + Definition: Survivorship Health Education Instructor + Handle: SHE Instructor + Origin: caDSR + Value: SHE Instructor + SM: + Code: '2582142' + Definition: Microscopy that uses a sample affixed to a slide. + Handle: SM + Origin: caDSR + Value: SM + SMR: + Code: '2582152' + Definition: Pairs of images that may be viewed together in stereo. + Handle: SMR + Origin: caDSR + Value: SMR + SR: + Code: '2582149' + Definition: A document type consisting of a document header and a document + body. + Handle: SR + Origin: caDSR + Value: SR + SRF: + Code: '12057623' + Definition: A technique of determining the combination of spherical and cylindrical + lenses that will result in the best-corrected visual acuity. The process + involves the patient fixating at the Snellen Chart, while the clinician + presents a variety of lenses and alters the power of the lenses in the + trial frames according to the patient's subjective responses regarding + improvements to their vision. + Handle: SRF + Origin: caDSR + Value: SRF + ST: + Code: '2582127' + Definition: A type of tomography in which gamma photon-emitting radionuclides + are administered to the patient and then detected by one or more gamma + cameras rotated around the patient. From the series of two-dimensional + images produced, a three-dimensional image can be created by computer + reconstruction. + Handle: ST + Origin: caDSR + Value: ST + STAIN: + Code: '12057624' + Definition: An instrument designed to automate the process of staining specimens + affixed to slides. + Handle: STAIN + Origin: caDSR + Value: STAIN + SVG: + Code: '11422204' + Definition: A specification for describing vector graphics using extensible + markup language. + Handle: SVG + Origin: caDSR + Value: SVG + SVS: + Code: '11426797' + Definition: An electronic file format based on TIFF that is used for storing + multiple high-resolution images in a single electronic file. + Handle: SVS + Origin: caDSR + Value: SVS + ScD: + Code: '2573109' + Definition: Doctor of Science + Handle: ScD + Origin: caDSR + Value: ScD + Scientific Monitor: + Code: '2578802' + Definition: An individual with expertise in one or more scientific disciples + that can evaluate and review scientific data generated during a study. + The individual reviews study records to determine that a study is being + conducted in accordance with the protocol and works with the clinical + research coordinator to check all data and documentation from the study. + Handle: Scientific Monitor + Origin: caDSR + Value: Scientific Monitor + Secondary CDUS Contact: + Code: '2578803' + Definition: A subordinate person within the Cooperative Group, institution, + clinical site, or/and particular study that is responsible for the clinical + trial data completion and submission to NCI via Clinical Data Update System + (CDUS). + Handle: Secondary CDUS Contact + Origin: caDSR + Value: Secondary CDUS Contact + Sepsis: + Code: '2946181' + Definition: The presence of pathogenic microorganisms in the blood stream + causing a rapidly progressing systemic reaction that may lead to shock. + Symptoms include fever, chills, tachycardia, and increased respiratory + rate. It is a medical emergency that requires urgent medical attention. + Handle: Sepsis + Origin: caDSR + Value: Sepsis + Sequence Record Format: + Code: '11422203' + Definition: Any file format designed to store molecular sequence data. + Handle: Sequence Record Format + Origin: caDSR + Value: Sequence Record Format + Shipping Designee: + Code: '2578804' + Definition: A person of contact that denotes where, and to whom pharmaceuticals + are to be shipped. The person is assigned by the principal investigator + and registered with the NCI CTEP Pharmaceutical Management Branch (PMB) + as a distributor of investigational new drugs (INDs) for all NCI-sponsored + trials. Additionally, this person is authorized to place orders for investigational + agents with PMB, requests drug transfers, and maintains drug inventory + documentation at the clinical site. Investigational agents are shipped + from the PMB directly to the institution or the investigator's practice + site where the agent will be prepared and administered. + Handle: Shipping Designee + Origin: caDSR + Value: Shipping Designee + Sinusoidal Obstruction Syndrome: + Code: '2793925' + Definition: Blockage of the small- or medium-sized hepatic veins due to nonthrombotic + subendothelial edema which may progress to fibrosis. + Handle: Sinusoidal Obstruction Syndrome + Origin: caDSR + Value: Sinusoidal Obstruction Syndrome + Site Coordinator: + Code: '2578805' + Definition: "The staff member at the organization who is responsible for program + management of the study and functions as the primary contact at the + organization.\r\n" + Handle: Site Coordinator + Origin: caDSR + Value: Site Coordinator + Site Investigator: + Code: '2573700' + Definition: An investigator designated to a specific study location. + Handle: Site Investigator + Origin: caDSR + Value: Site Investigator + Site Leader: + Code: '2573721' + Definition: A person in charge of a group at the location of a research project. + Handle: Site Leader + Origin: caDSR + Value: Site Leader + Site Personnel: + Code: '7639691' + Definition: Site Personnel + Handle: Site Personnel + Origin: caDSR + Value: Site Personnel + Site Representative Investigator: + Code: '2578806' + Definition: The investigator who officially represents a clinical site that + participates in a multicentral clinical trial. The responsibilities of + the official include the management of site compliance with rules and + regulations and attention to personnel and patient requisites. + Handle: Site Representative Investigator + Origin: caDSR + Value: Site Representative Investigator + Smoke Exposure: + Code: '11167655' + Definition: Environmental, occupational or consumer-based exposure to airborne + gases and particulates produced when materials undergo combustion or thermal + decomposition. + Handle: Smoke Exposure + Origin: caDSR + Value: Smoke Exposure + Smokeless Tobacco Exposure: + Code: '11167688' + Definition: Environmental, occupational, or consumer-based exposure to any + smokeless tobacco product. + Handle: Smokeless Tobacco Exposure + Origin: caDSR + Value: Smokeless Tobacco Exposure + Social Worker: + Code: '2569169' + Definition: A professional trained to talk with people and their families + about emotional or physical needs, and to find them support services. + Handle: Social Worker + Origin: caDSR + Value: Social Worker + Spinal Muscular Atrophy: + Code: '3211451' + Definition: An inherited disorder characterized by degeneration of the spinal + cord and the cerebellum. Symptoms may appear at any age and include progressive + loss of coordination of gait, hands, speech, and eye movements. + Handle: Spinal Muscular Atrophy + Origin: caDSR + Value: Spinal Muscular Atrophy + Sponsor: + Code: '2576275' + Definition: A person or organization that supports or champions something. + Handle: Sponsor + Origin: caDSR + Value: Sponsor + Sponsor Medical Expert: + Code: '2578810' + Definition: A physician or health care provider selected by the sponsor to + be readily available to advise clinical trial officials on trial related + medical questions or problems. + Handle: Sponsor Medical Expert + Origin: caDSR + Value: Sponsor Medical Expert + Sponsor/Medical Expert: + Code: '2576276' + Definition: Sponsor/Medical Expert + Handle: Sponsor/Medical Expert + Origin: caDSR + Value: Sponsor/Medical Expert + Sr.: + Code: '2577070' + Definition: A suffix used to distinguish a father from his son when they have + the same given name. + Handle: Sr. + Origin: caDSR + Value: Sr. + Statistician: + Code: '2578807' + Definition: A person responsible for the compilation, organization, and analysis + of mathematical data. + Handle: Statistician + Origin: caDSR + Value: Statistician + Stereotactic Body Radiation Therapy: + Code: '3193538' + Definition: Stereotactic radiation therapy in which one or several maximum + dose radiation treatments are delivered targeting cancers of the body, + excluding the brain or spine. + Handle: Stereotactic Body Radiation Therapy + Origin: caDSR + Value: Stereotactic Body Radiation Therapy + Stereotactic Radiosurgery: + Code: '2578537' + Definition: A type of external radiation therapy that uses special equipment + to position the patient and precisely give a single large dose of radiation + to a tumor. It is used to treat brain tumors and other brain disorders + that cannot be treated by regular surgery. It is also being studied in + the treatment of other types of cancer. + Handle: Stereotactic Radiosurgery + Origin: caDSR + Value: Stereotactic Radiosurgery + Study Chair: + Code: '2578808' + Definition: A person who is responsible for providing overall management for + the operation of the study, and for reporting to the Data and Safety Monitoring + Board. The continual review of the data by an independent individual or + DSMB assures the investigator(s) that the trial can continue without jeopardizing + patient safety. + Handle: Study Chair + Origin: caDSR + Value: Study Chair + Study Chairperson: + Code: '2576277' + Definition: A person who is responsible for providing overall management for + the operation of the study, and for reporting to the Data and Safety Monitoring + Board. The continual review of the data by an independent individual or + DSMB assures the investigator(s) that the trial can continue without jeopardizing + patient safety. + Handle: Study Chairperson + Origin: caDSR + Value: Study Chairperson + Study Coordinator: + Code: '2578809' + Definition: A person who handles most of the administrative responsibilities + of a clinical study, acts as liaison between investigative site and sponsor, + and reviews all data and records before a monitor's visit. + Handle: Study Coordinator + Origin: caDSR + Value: Study Coordinator + Subject Recruiter: + Code: '2578811' + Definition: A person whose task is to identify and enroll individuals into + a research study. + Handle: Subject Recruiter + Origin: caDSR + Value: Subject Recruiter + Submitting Pathologist: + Code: '2578812' + Definition: A pathologist that submits a proposal or letter of intent to participate + in a study or who submits results or diagnoses for use in a study. + Handle: Submitting Pathologist + Origin: caDSR + Value: Submitting Pathologist + Suicide: + Code: '2572283' + Definition: The act of ending one's own life. + Handle: Suicide + Origin: caDSR + Value: Suicide + Surgeon: + Code: '2576273' + Definition: A physician who treats disease, injury, and deformity by operation + or manipulation. + Handle: Surgeon + Origin: caDSR + Value: Surgeon + Surgical Complication: + Code: '13204085' + Definition: A disease or disorder that occurs during, soon after or as a result + of a surgical procedure. + Handle: Surgical Complication + Origin: caDSR + Value: Surgical Complication + Surgical Oncologist: + Code: '2854825' + Definition: A doctor who performs biopsies and other surgical procedures in + cancer patients. + Handle: Surgical Oncologist + Origin: caDSR + Value: Surgical Oncologist + Surgical Procedure: + Code: '3440172' + Definition: A diagnostic or treatment procedure performed by manual and/or + instrumental means, often involving an incision and the removal or replacement + of a diseased organ or tissue; of or relating to or involving or used + in surgery or requiring or amenable to treatment by surgery. + Handle: Surgical Procedure + Origin: caDSR + Value: Surgical Procedure + Surgical Resection: + Code: '7343802' + Definition: The surgical removal of an organ or a part of an organ. + Handle: Surgical Resection + Origin: caDSR + Value: Surgical Resection + TAR: + Code: '11426798' + Definition: A file format generated by the Unix command-line utility tar (tape + archive). It is used for collecting many files into one archive file. + Handle: TAR + Origin: caDSR + Value: TAR + TEXTUREMAP: + Code: '12057625' + Definition: A two-dimensional image file that stores information describing + surface texture details across a specimen or image. + Handle: TEXTUREMAP + Origin: caDSR + Value: TEXTUREMAP + TG: + Code: '2582128' + Definition: Computed tomography that describes temperature details across + a surface. + Handle: TG + Origin: caDSR + Value: TG + TIFF: + Code: '11426800' + Definition: A bitmap graphics file format utilizing tagged fields. + Handle: TIFF + Origin: caDSR + Value: TIFF + TSV: + Code: '11426801' + Definition: A file format where each line in the file contains a single piece + of data and where each field or value in a line of data is separated from + the next by a tab character. + Handle: TSV + Origin: caDSR + Value: TSV + TXT: + Code: '11422197' + Definition: A data format consisting of readable textual material maintained + as a sequential file. + Handle: TXT + Origin: caDSR + Value: TXT + Targeted Molecular Therapy: + Code: '2793528' + Definition: Cancer therapies designed to act upon specific molecules in metabolic + pathways or processes involved in carcinogenesis, tumor growth, or tumor + spread. + Handle: Targeted Molecular Therapy + Origin: caDSR + Value: Targeted Molecular Therapy + ThD: + Code: '2713443' + Definition: A doctoral degree in theology. It is a research degree, involving + the publication of an original contribution to scholarship in the form + of a dissertation, that is for most purposes the equivalent of a Doctor + of Philosophy in Theology or a similar discipline. + Handle: ThD + Origin: caDSR + Value: ThD + Thermo RAW: + Code: '11426799' + Definition: A proprietary file format developed by Thermo Scientific to capture + mass spectrometry data produced by Thermo mass spectrometers. + Handle: Thermo RAW + Origin: caDSR + Value: Thermo RAW + Thoracentesis: + Code: '2574293' + Definition: The removal of excess fluid via needle puncture from the thoracic + cavity. + Handle: Thoracentesis + Origin: caDSR + Value: Thoracentesis + Thromboembolic: + Code: '2768980' + Definition: Obstruction of a vessel by a blood clot that has been transported + from a distant site by the blood stream. + Handle: Thromboembolic + Origin: caDSR + Value: Thromboembolic + Thrombosis: + Code: '4792371' + Definition: The formation of a blood clot in the lumen of a vessel or heart + chamber; causes include coagulation disorders and vascular endothelial + injury. + Handle: Thrombosis + Origin: caDSR + Value: Thrombosis + Thrombotic thrombocytopenic purpura (HUS/TTP): + Code: '2769001' + Definition: Purpura associated with a reduction in circulating blood platelets + which can result from a variety of factors. + Handle: Thrombotic thrombocytopenic purpura (HUS/TTP) + Origin: caDSR + Value: Thrombotic thrombocytopenic purpura (HUS/TTP) + Tobacco Related Exposure: + Code: '11167650' + Definition: Environmental, occupational or consumer-based exposure to airborne + gases and particulates produced by direct or nearby use of a vaporized + or combusted tobacco product. + Handle: Tobacco Related Exposure + Origin: caDSR + Value: Tobacco Related Exposure + Toxicity: + Code: '4615972' + Definition: The finding of bodily harm due to the poisonous effects of something. + Handle: Toxicity + Origin: caDSR + Value: Toxicity + Translator: + Code: '2576584' + Definition: A person or program involved in revealing the meaning of a text + or spoken language into a form recognized by the target audience. + Handle: Translator + Origin: caDSR + Value: Translator + Treating Physician: + Code: '2576278' + Definition: The physician who directly administers medical aid to a patient + or study subject. + Handle: Treating Physician + Origin: caDSR + Value: Treating Physician + Tumor: + Code: '3184945' + Definition: A tissue sample, or entire tumor that is removed for microscopic + examination. + Handle: Tumor + Origin: caDSR + Value: Tumor + Tumor Debulking: + Code: '2980356' + Definition: The surgical removal of as much of a malignant tumor as is reasonably + possible. This procedure increases the effectiveness of the subsequent + administration of chemotherapy and/or radiation therapy. + Handle: Tumor Debulking + Origin: caDSR + Value: Tumor Debulking + Tumor Free: + Code: '6719428' + Definition: There is no evidence of a tumor in the individual. + Handle: Tumor Free + Origin: caDSR + Value: Tumor Free + US: + Code: '2580423' + Definition: A technique in which high-frequency sound waves are bounced off + internal organs and the echo pattern is converted into a 2 dimensional + picture of the structures beneath the transducer. + Handle: US + Origin: caDSR + Value: US + Ultrasound Guided Biopsy: + Code: '5027135' + Definition: A biopsy procedure that uses an ultrasound imaging device to find + an abnormal area of tissue and guide its removal for examination under + a microscope. + Handle: Ultrasound Guided Biopsy + Origin: caDSR + Value: Ultrasound Guided Biopsy + Ultrasound Imaging: + Code: '5612303' + Definition: A technique in which high-frequency sound waves are bounced off + internal organs and the echo pattern is converted into a 2 dimensional + picture of the structures beneath the transducer. + Handle: Ultrasound Imaging + Origin: caDSR + Value: Ultrasound Imaging + Unacceptable Toxicity: + Code: '13571067' + Definition: Therapy-related toxicity leading to multiple treatment dose reductions + or delays, early treatment stoppage, unplanned hospital admission, or + death. + Handle: Unacceptable Toxicity + Origin: caDSR + Value: Unacceptable Toxicity + Unclassified infection / Infection NOS: + Code: '3837944' + Definition: 'Not characterized in any other way.: Not arranged or included + in any specific grouping.: A disorder resulting from the presence and + activity of a microbial, viral, or parasitic agent. It can be transmitted + by direct or indirect contact.' + Handle: Unclassified infection / Infection NOS + Origin: caDSR + Value: Unclassified infection / Infection NOS + Uncompressed: + Code: '11480564' + Definition: A file containing data that is in an uncompressed state. + Handle: Uncompressed + Origin: caDSR + Value: Uncompressed + Unknown: + Code: '5682953' + Definition: Not known, not observed, not recorded, or refused. + Handle: Unknown + Origin: caDSR + Value: Unknown + Unspecified: + Code: '2573360' + Definition: Not stated explicitly or in detail. + Handle: Unspecified + Origin: caDSR + Value: Unspecified + VA: + Code: '12057626' + Definition: Sharpness of vision, the ability to discern fine detail. + Handle: VA + Origin: caDSR + Value: VA + VCF: + Code: '11426802' + Definition: A text-based electronic file used for storing gene sequence variation + data. The first text section is composed of a header containing the metadata + and keywords used in the file. This is followed by the body of the file + which is tab-separated into eight mandatory data columns for each sample. + Additionally, the body of the file can include an unlimited number of + optional columns to record other sample-related data. + Handle: VCF + Origin: caDSR + Value: VCF + VF: + Code: '2582157' + Definition: Videofluorography (retired) + Handle: VF + Origin: caDSR + Value: VF + VOD: + Code: '2768635' + Definition: Disorder in which veins are partially or completely obstructed + or the blood flow through the veins is suboptimal.--2004 + Handle: VOD + Origin: caDSR + Value: VOD + Vascular, not otherwise specified: + Code: '2768978' + Definition: 'Relating to or containing blood vessels.: Not characterized in + any other way.' + Handle: Vascular, not otherwise specified + Origin: caDSR + Value: Vascular, not otherwise specified + Veno-occlusive disease (VOD) / sinusodial obstruction syndrome (SOS): + Code: '2793925' + Definition: Blockage of the small- or medium-sized hepatic veins due to nonthrombotic + subendothelial edema which may progress to fibrosis. + Handle: Veno-occlusive disease (VOD) / sinusodial obstruction syndrome (SOS) + Origin: caDSR + Value: Veno-occlusive disease (VOD) / sinusodial obstruction syndrome (SOS) + Viral infection: + Code: '2768976' + Definition: A general term for diseases produced by viruses. + Handle: Viral infection + Origin: caDSR + Value: Viral infection + White: + Code: '2572236' + Definition: Denotes person with European, Middle Eastern, or North African + ancestral origin who identifies, or is identified, as White. + Handle: White + Origin: caDSR + Value: White + With Tumor: + Code: '6719426' + Definition: There is evidence of a tumor in an individual. + Handle: With Tumor + Origin: caDSR + Value: With Tumor + Wood Dust Exposure: + Code: '11167654' + Definition: Environmental or occupational exposure to granular solids generated + when timber is processed, such as when it is chipped, sawed, turned, drilled + or sanded. + Handle: Wood Dust Exposure + Origin: caDSR + Value: Wood Dust Exposure + X: + Code: '14305179' + Definition: A gender designation for individuals who identify themselves as + not exclusively male nor female, such as non-binary, intersex or gender-non-conforming. + Handle: X + Origin: caDSR + Value: X + XA: + Code: '2582129' + Definition: The X-ray examination of the blood vessels or chambers of the + heart. + Handle: XA + Origin: caDSR + Value: XA + XC: + Code: '2582143' + Definition: Photographic image acquisition using a camera mounted externally + from the subject. + Handle: XC + Origin: caDSR + Value: XC + XLS: + Code: '11426803' + Definition: A proprietary binary file format used to store spreadsheet data + in Microsoft Excel. + Handle: XLS + Origin: caDSR + Value: XLS + XLSX: + Code: '11426804' + Definition: A proprietary file format developed by Microsoft that allows the + user to save a spreadsheet created in Excel in an open XML-format. The + file then can be read and opened by other spreadsheet-compatible applications. + Handle: XLSX + Origin: caDSR + Value: XLSX + XML: + Code: '2581637' + Definition: Extensible Markup Language + Handle: XML + Origin: caDSR + Value: XML + YAML: + Code: '11426805' + Definition: A human-readable, tree-structured data-serialization language + often used to create configuration files. + Handle: YAML + Origin: caDSR + Value: YAML + 'Yes': + Code: '6594241' + Definition: The affirmative response to a question. + Handle: 'Yes' + Origin: caDSR + Value: 'Yes' + ZIP: + Code: '11426806' + Definition: An archive file format that supports lossless data compression. + It is used to compress one or more files together into a single location. + Handle: ZIP + Origin: caDSR + Value: ZIP + bedgraph: + Code: '11422001' + Definition: A format that allows display of continuous-valued data in track + format. This display type is useful for probability scores and transcriptome + data. + Handle: bedgraph + Origin: caDSR + Value: bedgraph + bigBed: + Code: '11422002' + Definition: A format for large sequence annotation tracks, similar to the + textual browser extensible data (BED) format. The annotated items can + be either simple or a linked collection of exons. + Handle: bigBed + Origin: caDSR + Value: bigBed + bigWig: + Code: '11422003' + Definition: A format for large sequence annotation tracks that consist of + a value for each sequence position, similar to the textual wiggle (WIG) + format. + Handle: bigWig + Origin: caDSR + Value: bigWig + gVCF: + Code: '14818706' + Definition: A text file format used for storing gene sequence variations. + It is a type of variant call format that has a record for all sites, whether + there is a variant call there or not. The format includes metrics of the + confidence that positions are actually non-variant vs. a factor of minimum + read-depth and genotype quality. + Handle: gVCF + Origin: caDSR + Value: gVCF + md5sum: + Code: '11475055' + Definition: A 32-character hexadecimal number that is computed on a file. + Handle: md5sum + Origin: caDSR + Value: md5sum + mtx: + Code: '14534322' + Definition: A format for the storage of numerical or pattern matrices in a + dense (array format) or sparse (coordinate format) representation. + Handle: mtx + Origin: caDSR + Value: mtx + mzIdentML: + Code: '14534321' + Definition: An exchange format for peptides and proteins identified from mass + spectra. + Handle: mzIdentML + Origin: caDSR + Value: mzIdentML + mzML: + Code: '11422142' + Definition: An open-source format for mass spectrometer output files that + was designed to be utilized and adapted as advances in mass spectrometry + technology proceed. This was standardized by the Human Proteome Organization + (HUPO)-Proteomics Standards Initiative (PSI) Mass Spectrometry Standards + (MSS) Working Group. + Handle: mzML + Origin: caDSR + Value: mzML + mzXML: + Code: '11422143' + Definition: An XML based common file format for mass spectrometry data. + Handle: mzXML + Origin: caDSR + Value: mzXML + sha1: + Code: '2929855' + Definition: An algorithm for computing a condensed representation of a message + or a data file that produces a 160-bit message digest. + Handle: sha1 + Origin: caDSR + Value: sha1 + sha256: + Code: '2929856' + Definition: An algorithm for computing a condensed representation of a message + or a data file that produces a 256-bit message digest. + Handle: sha256 + Origin: caDSR + Value: sha256 diff --git a/model-desc/crdc-model.yml b/model-desc/crdc-model.yml index 1cfe601..9759a1e 100644 --- a/model-desc/crdc-model.yml +++ b/model-desc/crdc-model.yml @@ -79,5891 +79,4 @@ Nodes: - Treatment Anatomic Site UBERON Identifier - Treatment Type - Treatment or Therapy Indicator -PropDefinitions: - Body Part Examined Anatomic Site UBERON Identifier: - Desc: The UBERON identifier of the organ or part of the body assessed. - Term: - - Code: '14883072' - Definition: The UBERON identifier of the organ or part of the body assessed. - Handle: Body Part Examined Anatomic Site UBERON Identifier - Origin: caDSR - Value: Body Part Examined Anatomic Site UBERON Identifier - Type: TBD - DICOM Modality Type: - Desc: The specific manner, characteristic, pattern or function, method or - process, or devices that created the data. - Enum: - - AR - - AS - - ASMT - - AU - - BDUS - - BI - - BMD - - CD - - CF - - CP - - CR - - CS - - CT - - CTPROTOCOL - - DD - - DF - - DG - - DM - - DMS - - DOC - - DS - - DX - - EC - - ECG - - EEG - - EMG - - EOG - - EPS - - ES - - FA - - FID - - FS - - GM - - HC - - HD - - IO - - IOL - - IVOCT - - IVUS - - KER - - KO - - LEN - - LP - - LS - - M3D - - MA - - MG - - MR - - MS - - NM - - OAM - - OCT - - OP - - OPM - - OPT - - OPTBSV - - OPTENF - - OPV - - OSS - - OT - - PLAN - - POS - - PR - - PT - - PX - - REG - - RESP - - RF - - RG - - RTDOSE - - RTIMAGE - - RTPLAN - - RTRECORD - - RTSTRUCT - - RWV - - SEG - - SM - - SMR - - SR - - SRF - - ST - - STAIN - - TEXTUREMAP - - TG - - US - - VA - - VF - - XA - - XC - Term: - - Code: '12137353' - Definition: The specific manner, characteristic, pattern or function, - method or process, or devices that created the data. - Handle: DICOM Modality Type - Origin: caDSR - Value: DICOM Modality Type - Data File Checksum Type: - Desc: The method by which the file checksum was calculated. - Enum: - - md5sum - - sha1 - - sha256 - Term: - - Code: '11475057' - Definition: The method by which the file checksum was calculated. - Handle: Data File Checksum Type - Origin: caDSR - Value: Data File Checksum Type - Data File Checksum Value: - Desc: A small-sized block of data derived from a file for the purpose of detecting - errors that may have been introduced during file transmission and/or storage - and used to verify data integrity. - Term: - - Code: '11480133' - Definition: A small-sized block of data derived from a file for the purpose - of detecting errors that may have been introduced during file transmission - and/or storage and used to verify data integrity. - Handle: Data File Checksum Value - Origin: caDSR - Value: Data File Checksum Value - Type: TBD - Data File Compression Status: - Desc: The state of data when saved to storage space or during data transmission. - Enum: - - Compressed - - Uncompressed - - Unknown - Term: - - Code: '11387114' - Definition: The state of data when saved to storage space or during data - transmission. - Handle: Data File Compression Status - Origin: caDSR - Value: Data File Compression Status - Data File Description: - Desc: A free text field that can be used to document the content and other - details about an electronic file that may not be captured elsewhere. - Term: - - Code: '11280338' - Definition: A free text field that can be used to document the content - and other details about an electronic file that may not be captured - elsewhere. - Handle: Data File Description - Origin: caDSR - Value: Data File Description - Type: TBD - Data File Format: - Desc: A defined organization or layout representing and structuring data in - a computer file. - Enum: - - ADF - - AVI - - BAI - - BAM - - BCR Biotab - - BED - - BEDPE Format - - BIOM - - Binary Format - - CEL - - CRAI - - CRAM - - CSV - - DICOM - - DOCX - - DSV - - FASTA - - FASTQ - - GCT/Res Format - - GFF3 - - GPR - - GTF - - GZIP Format - - GenBank Format - - HDF5 - - HIC - - HTML - - IDAT - - IDF - - JPEG - - JPEG 2000 - - JSON - - MAF - - MAGE-TAB - - MAT - - MATLAB Script - - MEX - - MPEG-4 - - NIFTI Format - - OME-TIFF - - PDF - - PNG - - Plain Text Data Format - - Python Script Format - - R File Format - - R Markdown - - SDRF - - SVG - - SVS - - Sequence Record Format - - TAR - - TIFF - - TSV - - TXT - - Thermo RAW - - VCF - - XLS - - XLSX - - XML - - YAML - - ZIP - - bedgraph - - bigBed - - bigWig - - gVCF - - mtx - - mzIdentML - - mzML - - mzXML - Term: - - Code: '11416926' - Definition: A defined organization or layout representing and structuring - data in a computer file. - Handle: Data File Format - Origin: caDSR - Value: Data File Format - Data File Name: - Desc: The literal label for an electronic data file. - Term: - - Code: '11284037' - Definition: The literal label for an electronic data file. - Handle: Data File Name - Origin: caDSR - Value: Data File Name - Type: TBD - Data File Size: - Desc: The measure (in bytes) of how much space a data file takes up on a storage - medium. - Term: - - Code: '11479876' - Definition: The measure (in bytes) of how much space a data file takes - up on a storage medium. - Handle: Data File Size - Origin: caDSR - Value: Data File Size - Type: TBD - Days from First Subject Visit to Specimen Collection: - Desc: The number of days from the date the subject first visited to the date - a sample was collected. - Term: - - Code: '11248874' - Definition: The number of days from the date the subject first visited - to the date a sample was collected. - Handle: Days from First Subject Visit to Specimen Collection - Origin: caDSR - Value: Days from First Subject Visit to Specimen Collection - Type: TBD - Days from First Treatment to Specimen Collection: - Desc: The number of days from the date the first treatment was administered - to the date a sample was collected. - Term: - - Code: '11250807' - Definition: The number of days from the date the first treatment was administered - to the date a sample was collected. - Handle: Days from First Treatment to Specimen Collection - Origin: caDSR - Value: Days from First Treatment to Specimen Collection - Type: TBD - Days from Initial Genomic Sequencing to Specimen Collection: - Desc: The number of days from the date the initial genomic sequencing was - done to the date a sample was collected. - Term: - - Code: '11251130' - Definition: The number of days from the date the initial genomic sequencing - was done to the date a sample was collected. - Handle: Days from Initial Genomic Sequencing to Specimen Collection - Origin: caDSR - Value: Days from Initial Genomic Sequencing to Specimen Collection - Type: TBD - Days from Recurrence to Specimen Collection: - Desc: The number of days from the date the disease recurrence was identified - to the date a sample was collected. - Term: - - Code: '11251133' - Definition: The number of days from the date the disease recurrence was - identified to the date a sample was collected. - Handle: Days from Recurrence to Specimen Collection - Origin: caDSR - Value: Days from Recurrence to Specimen Collection - Type: TBD - Days from Specimen Collection to Initial Pathologic Diagnosis: - Desc: The number of days from the date a sample was collected to the date - of the initial pathologic diagnosis. - Term: - - Code: '11253404' - Definition: The number of days from the date a sample was collected to - the date of the initial pathologic diagnosis. - Handle: Days from Specimen Collection to Initial Pathologic Diagnosis - Origin: caDSR - Value: Days from Specimen Collection to Initial Pathologic Diagnosis - Type: TBD - Disease Progression or Recurrence Indicator: - Desc: An indication as to whether the subject is experiencing a worsening - or a return of the disease. - Enum: - - 'No' - - Not Allowed To Collect - - Not Applicable - - Not Reported - - Unknown - - 'Yes' - Term: - - Code: '13529783' - Definition: An indication as to whether the subject is experiencing a - worsening or a return of the disease. - Handle: Disease Progression or Recurrence Indicator - Origin: caDSR - Value: Disease Progression or Recurrence Indicator - "Disease Progression or Recurrence Type": - Desc: A term describing the kind of worsening or return of disease that a - subject is experiencing. - Enum: - - Biochemical - - Distant - - Local - - Locoregional - - Not Reported - - Regional - - Unknown - Term: - - Code: '14742451' - Definition: A term describing the kind of worsening or return of disease - that a subject is experiencing. - Handle: "Disease Progression or Recurrence Type" - Origin: caDSR - Value: "Disease Progression or Recurrence Type" - ECOG Performance Status Score: - Desc: "A score for a functional scale designed to assess disease progression - and its affect on the daily living abilities of the patient that was - developed by Eastern Cooperative Oncology Group (ECOG, now ECOG-ACRIN)." - Enum: - - '0' - - '1' - - '2' - - '3' - - '4' - - '5' - Term: - - Code: '88' - Definition: "A score for a functional scale designed to assess disease - progression and its affect on the daily living abilities of the - patient that was developed by Eastern Cooperative Oncology Group - (ECOG, now ECOG-ACRIN)." - Handle: ECOG Performance Status Score - Origin: caDSR - Value: ECOG Performance Status Score - Environmental Exposure Type: - Desc: "The category related to contact with chemical, biological, or physical - substances found in air, water, food, soil, or product that may have - a harmful effect on a person's health." - Enum: - - Asbestos Exposure - - Chemical Exposure - - Marijuana Smoke Exposure - - Radiation Exposure - - Radon Exposure - - Respirable Crystalline Silica Exposure - - Smoke Exposure - - Smokeless Tobacco Exposure - - Tobacco Related Exposure - - Wood Dust Exposure - Term: - - Code: '11256813' - Definition: "The category related to contact with chemical, biological, - or physical substances found in air, water, food, soil, or product - that may have a harmful effect on a person's health." - Handle: Environmental Exposure Type - Origin: caDSR - Value: Environmental Exposure Type - HGNC Gene Identifier: - Desc: The unique numerical identifier for a particular gene assigned by the - HGNC (HUGO Gene Nomenclature Committee - an organism specific nomenclature - committee). - Enum: - - HGNC (By Reference) - Term: - - Code: '12461467' - Definition: The unique numerical identifier for a particular gene assigned - by the HGNC (HUGO Gene Nomenclature Committee - an organism specific - nomenclature committee). - Handle: HGNC Gene Identifier - Origin: caDSR - Value: HGNC Gene Identifier - ICD-10-CM Disease Code: - Desc: "An alphanumeric value from the tenth version of the International - Classification of Disease (ICD-10-CM, the disease code subset of ICD-10) - used to identify the diagnosis in humans." - Enum: - - ICD-10-CM (By Reference) - Term: - - Code: '11479873' - Definition: "An alphanumeric value from the tenth version of the International - Classification of Disease (ICD-10-CM, the disease code subset of - ICD-10) used to identify the diagnosis in humans." - Handle: ICD-10-CM Disease Code - Origin: caDSR - Value: ICD-10-CM Disease Code - ICD-O-3 Morphology Code: - Desc: The coded result of analyzing the microscopic anatomy of normal and - abnormal cells and tissues of the specimen by examining a thin slice (section) - under a light (optical) or electron microscope. The code represents the - histology of the disease using the third edition of the International - Classification of Diseases for Oncology. - Enum: - - ICD-O-3 (By Reference) - Term: - - Code: '11326261' - Definition: The coded result of analyzing the microscopic anatomy of normal - and abnormal cells and tissues of the specimen by examining a thin - slice (section) under a light (optical) or electron microscope. The - code represents the histology of the disease using the third edition - of the International Classification of Diseases for Oncology. - Handle: ICD-O-3 Morphology Code - Origin: caDSR - Value: ICD-O-3 Morphology Code - Karnofsky Performance Status Score: - Desc: "A score from the Karnofsky Performance Status representing the functional - capabilities or the daily living abilities of a person." - Enum: - - '0' - - '10' - - '100' - - '20' - - '30' - - '40' - - '50' - - '60' - - '70' - - '80' - - '90' - Term: - - Code: '2003853' - Definition: "A score from the Karnofsky Performance Status representing - the functional capabilities or the daily living abilities of a - person." - Handle: Karnofsky Performance Status Score - Origin: caDSR - Value: Karnofsky Performance Status Score - Last Known Disease Status: - Desc: The most recently documented condition or state of an subject's neoplasm. - Enum: - - Biochemical evidence of disease without structural correlate - - Distant Metastasis - - Localized Disease - - New Tumor Event - - Not Allowed To Collect - - Not Applicable - - Not Reported - - Regional Disease - - Tumor Free - - Unknown - - With Tumor - Term: - - Code: '12447172' - Definition: The most recently documented condition or state of an subject's - neoplasm. - Handle: Last Known Disease Status - Origin: caDSR - Value: Last Known Disease Status - Lymph Node Involvement Anatomic Site UBERON Identifier: - Desc: The UBERON identifier of the organ or part of the body describing lymph - node involvement in disease. - Term: - - Code: '14883075' - Definition: The UBERON identifier of the organ or part of the body describing - lymph node involvement in disease. - Handle: Lymph Node Involvement Anatomic Site UBERON Identifier - Origin: caDSR - Value: Lymph Node Involvement Anatomic Site UBERON Identifier - Type: TBD - Method of Diagnosis: - Desc: The clinical or laboratory procedure(s) used in the determination of - a disease diagnosis. - Enum: - - Autopsy - - Biopsy - - Blood Sample - - Bone Marrow Aspirate - - Core Biopsy - - Cystoscopy - - Diagnostic Imaging - - Dilation and Curettage - - Enucleation - - Excisional Biopsy - - Fine Needle Aspiration - - Histopathology - - Imaging Technique - - Incisional Biopsy - - Laparoscopy - - Laparotomy - - Magnetic Resonance Imaging Study File - - Not Reported - - Pap Smear - - Pathologic Review - - Physical Examination - - Surgical Resection - - Thoracentesis - - Tumor Debulking - - Ultrasound Guided Biopsy - - Ultrasound Imaging - - Unknown - Term: - - Code: '14857681' - Definition: The clinical or laboratory procedure(s) used in the determination - of a disease diagnosis. - Handle: Method of Diagnosis - Origin: caDSR - Value: Method of Diagnosis - NCBI Taxonomy ID: - Desc: "A label provided by NCBI Taxonomy Database (https://www.ncbi.nlm.nih.gov/taxonomy/), - which uniquely identifies group or category, at any level, in a system - for classifying plants or animals (including humans) providing ranked - categories for the classification of organisms according to their suspected - evolutionary relationships." - Enum: - - NCBI (By Reference) - Term: - - Code: '10543100' - Definition: "A label provided by NCBI Taxonomy Database (https://www.ncbi.nlm.nih.gov/taxonomy/), - which uniquely identifies group or category, at any level, in a - system for classifying plants or animals (including humans) providing - ranked categories for the classification of organisms according - to their suspected evolutionary relationships." - Handle: NCBI Taxonomy ID - Origin: caDSR - Value: NCBI Taxonomy ID - Person Academic Degree Suffix Abbreviation Text: - Desc: The abbreviation that represents the affix occurring at the end of a - name for an award conferred by a college, university, or other postsecondary - education institution as official recognition for the successful completion - of a program of studies. - Enum: - - AA - - AAS - - AB - - ABA - - AE - - AM - - AS - - BA - - BBA - - BE - - BEd - - BEng - - BFA - - BN - - BS - - BSL - - BSN - - BSW - - BT - - DBA - - DC - - DD - - DDS - - DED - - DMD - - DO - - DPM - - DSW - - DVM - - DrPH - - EdD - - JD - - LLM - - MA - - MBA - - MCE - - MD - - MDI - - ME - - MEE - - MEd - - MFA - - MHSA - - MME - - MPA - - MPH - - MS - - MSL - - MSN - - MSW - - MT - - ND - - OD - - PhD - - PhE - - PharmD - - ScD - - ThD - Term: - - Code: '2668478' - Definition: The abbreviation that represents the affix occurring at the - end of a name for an award conferred by a college, university, or - other postsecondary education institution as official recognition - for the successful completion of a program of studies. - Handle: Person Academic Degree Suffix Abbreviation Text - Origin: caDSR - Value: Person Academic Degree Suffix Abbreviation Text - Person Email Address Text: - Desc: The string of characters that represents the electronic mail address - of a person. - Term: - - Code: '2517550' - Definition: The string of characters that represents the electronic mail - address of a person. - Handle: Person Email Address Text - Origin: caDSR - Value: Person Email Address Text - Type: TBD - Person Family/Last Name: - Desc: A means of identifying an individual by using a word or group of words - indicating a person's last (family) name. Synonym = Last Name, Surname. - Term: - - Code: '2179591' - Definition: A means of identifying an individual by using a word or group - of words indicating a person's last (family) name. Synonym = Last - Name, Surname. - Handle: Person Family/Last Name - Origin: caDSR - Value: Person Family/Last Name - Type: TBD - Person Genealogy Suffix Code: - Desc: Text term to represent an individual's position in a family lineage - or pedigree. - Enum: - - I - - II - - III - - IV - - Jr. - - Sr. - Term: - - Code: '2006475' - Definition: Text term to represent an individual's position in a family - lineage or pedigree. - Handle: Person Genealogy Suffix Code - Origin: caDSR - Value: Person Genealogy Suffix Code - Person Given/First Name: - Desc: A word or group of words indicating a person's first (personal or given) - name; the name that precedes the surname. Synonym = Given Name. - Term: - - Code: '2179589' - Definition: A word or group of words indicating a person's first (personal - or given) name; the name that precedes the surname. Synonym = Given - Name. - Handle: Person Given/First Name - Origin: caDSR - Value: Person Given/First Name - Type: TBD - Person Middle Name: - Desc: A means of identifying an individual by using a word or group of words - indicating a person's middle name. - Term: - - Code: '2179590' - Definition: A means of identifying an individual by using a word or group - of words indicating a person's middle name. - Handle: Person Middle Name - Origin: caDSR - Value: Person Middle Name - Type: TBD - Person Name Prefix Abbreviation Text: - Desc: The abbreviation that represents an affix occurring at or before the - beginning of an individual's name. - Enum: - - Bish. - - Br. - - Ch. - - Dr. - - Fr. - - Miss - - Mr. - - Mrs. - - Ms. - - Prof. - - R. - - Rev. - - Sr. - Term: - - Code: '2663165' - Definition: The abbreviation that represents an affix occurring at or - before the beginning of an individual's name. - Handle: Person Name Prefix Abbreviation Text - Origin: caDSR - Value: Person Name Prefix Abbreviation Text - Person ORCID Text: - Desc: A persistent unique digital identifier assigned to a principal investigator - by the Open Researcher and Contributor ID (ORCID) organization. - Term: - - Code: '10624734' - Definition: A persistent unique digital identifier assigned to a principal - investigator by the Open Researcher and Contributor ID (ORCID) organization. - Handle: Person ORCID Text - Origin: caDSR - Value: Person ORCID Text - Type: TBD - Person Role Type: - Desc: The text that describes the distinguishable characteristics of the action - or activity assigned to or required or expected of a person. - Enum: - - ABS Coordinator - - Abstractor - - Account Administrator - - AdEERS Contact - - Address Module Coordinator - - Admitting Physician - - Adverse Event Coordinator - - Agent Expert - - Agent Inspector - - Alternative Principal Investigator - - Associate - - Attending Physician - - Audiologist - - Branch Chief - - Bronchoscopist - - CDU Web Contact - - CEP Member - - Central Reviewer - - Checklist Completer - - Checklist Supervisor - - Clinical Coordinator - - Clinical Nurse Specialist - - Clinical Research Associate - - Co-Investigator - - Co-Project Officer - - Community Educator - - Concept Review Chair - - Consulting Physician - - Contact Person - - Contract Officer - - Contract Principal Investigator - - Coordinating Investigator - - Coordinator - - Data Manager - - Data Submitter - - Developer - - Division Head - - Drug Company Contact - - ENABLE Coach - - Employee - - Evaluator - - Funded Principal Investigator - - Gastroenterologist - - Grant Investigator - - Grant Principal Investigator - - Grant Specialist - - Group Coordinator - - Guardian - - Head of Division - - Health Care Provider - - Infusion Nurse - - Interpreter - - Interventional Radiologist - - Interviewer - - Investigator - - Laboratory Director - - Laboratory Technologist - - Lead Drug Monitor - - Legal Representative of the Sponsor - - Letter of Intent Review Chair - - Mail Contact - - Mail Contact (Mgr) - - Mail to contact - - Maintainer - - Medical Monitor - - Medical Oncologist - - Medical Physicist - - Neuropathologist - - Nurse - - Nurse Coach - - Nurse Practitioner - - Oncology Nurse - - PCP - - PMB Drug Company Contact - - Participant - - Participant Chief - - Patient - - Pharmaceutical Liaison - - Pharmacist - - Pharmacologist - - Physician - - Physician Assistant - - Physicist - - Population Member - - Practitioner - - Practitioner Assigned - - Primary CDUS Contact - - Primary Shipping Designee - - Primary care physician - - Principal Investigator - - Principal Investigator (MGR) - - Program Director - - Program Specialist - - Project Coordinator - - Project Officer - - Protocol Author - - Protocol Chair - - Protocol Chair at an Organization - - Protocol Lead Investigator - - Protocol Review Chair - - Protocol Specialist - - Radiation Oncologist - - Referring Pathologist - - Referring Physician - - Registrar - - Registration Coordinator - - Regulatory Coordinator - - Representative Investigator - - Research Clinician - - Research Nurse - - Research Pathologist - - Respondent - - Review Liaison - - Review Specialist - - Reviewing Pathologist - - Reviewing Radiologist - - SHE Instructor - - Scientific Monitor - - Secondary CDUS Contact - - Shipping Designee - - Site Coordinator - - Site Investigator - - Site Leader - - Site Personnel - - Site Representative Investigator - - Social Worker - - Sponsor - - Sponsor Medical Expert - - Sponsor/Medical Expert - - Statistician - - Study Chair - - Study Chairperson - - Study Coordinator - - Subject Recruiter - - Submitting Pathologist - - Surgeon - - Surgical Oncologist - - Translator - - Treating Physician - Term: - - Code: '2201713' - Definition: The text that describes the distinguishable characteristics - of the action or activity assigned to or required or expected of a - person. - Handle: Person Role Type - Origin: caDSR - Value: Person Role Type - Primary Cause of Death: - Desc: The circumstance or condition of greatest rank or importance that results - in the death of a living being. - Enum: - - APL Differentiation Syndrome - - Accidental death - - Acute GVHD - - Adult Respiratory Distress Syndrome (ARDS) - - Adverse Event - - Aspiration Pneumonia - - BCNU IP - - Bacterial infection - - Cancer Related - - Cardiac Disease - - Cardiac failure - - Cardiopulmonary Arrest - - Cardiovascular Disorder - - Cardiovascular accident - - Central nervous system(CNS) failure - - Chronic GVHD - - Chronic Obstructive Pulmonary Disease - - Chronic liver disease - - Congestive Heart Failure - - Coronary artery disease (atherosclerosis) - - Dementia (including Alzheimer's disease) - - Diabetes Mellitus - - Disseminated intravascular coagulation (DIC) - - Drug Related - - End-stage Renal Disease - - Failure to Thrive - - Fungal infection - - Gastrointestinal (GI) failure (not liver) - - Gastrointestinal hemorrhage - - Graft Versus Host Disease - - Graft rejection or failure - - HIV/AIDS - - Hemorrhage - - Hemorrhage, not otherwise specified - - Hemorrhagic cystitis - - Hepatitis - - Herpes - - IPS, idiopathic - - IPS, viral, cytomegalovirus(CMV) - - IPS, viral, other - - Immunotherapy-Related - - Infection - - Infection, NOS - - Infection, organism not identified - - Influenza - - Interstitial Pneumonia (IP) NOS - - Intracranial hemorrhage - - Liver failure (not VOD) - - Multiple Organ Failure - - Myocardial infarction - - Natural causes - - Non-protocol cancer therapy - - Not Cancer Related - - Not Reported - - Organ failure, not otherwise specified - - Other cause - - Parkinson's Disease - - Persistence or recurrence of underlying disease - - Pneumonia NOS - - Prior malignancy - - Protozoal infection - - Pulmonary Disease - - Pulmonary Embolism - - Pulmonary failure - - Pulmonary hemorrhage - - Radiation IP - - Recurrence/persistence/progression of disease reported for first HSCT - - Renal Disorder, NOS - - Renal failure - - Respiratory failure - - Sepsis - - Sinusoidal Obstruction Syndrome - - Spinal Muscular Atrophy - - Suicide - - Surgical Complication - - Thromboembolic - - Thrombosis - - Thrombotic thrombocytopenic purpura (HUS/TTP) - - Toxicity - - Unacceptable Toxicity - - Unclassified infection / Infection NOS - - Unknown - - VOD - - Vascular, not otherwise specified - - Veno-occlusive disease (VOD) / sinusodial obstruction syndrome (SOS) - - Viral infection - Term: - - Code: '4783274' - Definition: The circumstance or condition of greatest rank or importance - that results in the death of a living being. - Handle: Primary Cause of Death - Origin: caDSR - Value: Primary Cause of Death - Program Name: - Desc: "The narrative title used to refer to a broad framework (an administrative - umbrella) of goals under which related projects or other research - activities are grouped. Example - Clinical Proteomic Tumor Analysis - Consortium" - Term: - - Code: '11444542' - Definition: "The narrative title used to refer to a broad framework - (an administrative umbrella) of goals under which related projects - or other research activities are grouped. Example - Clinical - Proteomic Tumor Analysis Consortium" - Handle: Program Name - Origin: caDSR - Value: Program Name - Type: TBD - Program Short Name: - Desc: "An acronym or abbreviated form of the title of a broad framework - of goals under which related projects or other research activities - are grouped. Example – CPTAC" - Term: - - Code: '11459801' - Definition: "An acronym or abbreviated form of the title of a broad - framework of goals under which related projects or other research - activities are grouped. Example – CPTAC" - Handle: Program Short Name - Origin: caDSR - Value: Program Short Name - Type: TBD - Progression or Recurrence Anatomic Site UBERON Identifier: - Desc: The UBERON identifier of the organ or part of the body related to the - progressive or recurrent disease. - Term: - - Code: '14883061' - Definition: The UBERON identifier of the organ or part of the body related - to the progressive or recurrent disease. - Handle: Progression or Recurrence Anatomic Site UBERON Identifier - Origin: caDSR - Value: Progression or Recurrence Anatomic Site UBERON Identifier - Type: TBD - Project Name: - Desc: "The narrative title used to refer to an organ-, site-, disease- or - phase-specific data collection within a broad framework of goals under - which related studies or other research activities are grouped." - Term: - - Code: '11459804' - Definition: "The narrative title used to refer to an organ-, site-, disease- - or phase-specific data collection within a broad framework of goals - under which related studies or other research activities are grouped." - Handle: Project Name - Origin: caDSR - Value: Project Name - Type: TBD - Project Short Name: - Desc: "An acronym or abbreviated form of the title used to refer to an - organ-, site- or disease-specific data collection within a broad - framework of goals under which related studies or other research - activities are grouped." - Term: - - Code: '11459806' - Definition: "An acronym or abbreviated form of the title used to refer - to an organ-, site- or disease-specific data collection within - a broad framework of goals under which related studies or other - research activities are grouped." - Handle: Project Short Name - Origin: caDSR - Value: Project Short Name - Type: TBD - Resection or Biopsy Anatomic Site UBERON Identifier: - Desc: The UBERON identifier of the organ or part of the body resected or biopsied - Term: - - Code: '14883054' - Definition: The UBERON identifier of the organ or part of the body resected - or biopsied - Handle: Resection or Biopsy Anatomic Site UBERON Identifier - Origin: caDSR - Value: Resection or Biopsy Anatomic Site UBERON Identifier - Type: TBD - Sex at Birth: - Desc: The biological sex at the time of birth. - Enum: - - Decline to answer - - Don't know - - Female - - Intersex - - Male - - None of these describe me - - Prefer not to answer - - Unknown - - X - Term: - - Code: '7572817' - Definition: The biological sex at the time of birth. - Handle: Sex at Birth - Origin: caDSR - Value: Sex at Birth - Specimen Anatomic Site UBERON Identifier: - Desc: The identifier of the location within the body from which a specimen - was originally obtained. - Term: - - Code: '12083894' - Definition: The identifier of the location within the body from which - a specimen was originally obtained. - Handle: Specimen Anatomic Site UBERON Identifier - Origin: caDSR - Value: Specimen Anatomic Site UBERON Identifier - Type: TBD - Specimen Longest Dimension: - Desc: The maximum length of a straight line passing through the center of - the sample, measured in millimeters. - Term: - - Code: '5432602' - Definition: The maximum length of a straight line passing through the - center of the sample, measured in millimeters. - Handle: Specimen Longest Dimension - Origin: caDSR - Value: Specimen Longest Dimension - Type: TBD - Specimen Shortest Dimension: - Desc: The minimum length of a straight line passing through the center of - the sample, measured in millimeters - Term: - - Code: '5432603' - Definition: The minimum length of a straight line passing through the - center of the sample, measured in millimeters - Handle: Specimen Shortest Dimension - Origin: caDSR - Value: Specimen Shortest Dimension - Type: TBD - Specimen Tumor or Normal Category: - Desc: A text term that represents whether the sample taken was of cellular - composition and architectural patterns as expected (normal), had uncontrolled - cellular proliferation (tumor), or was comprised of morphologically normal - tissue from immediately surrounding the tumor (peritumoral). - Enum: - - Normal - - Not Reported - - Peritumoral - - Tumor - - Unknown - Term: - - Code: '14688604' - Definition: A text term that represents whether the sample taken was of - cellular composition and architectural patterns as expected (normal), - had uncontrolled cellular proliferation (tumor), or was comprised - of morphologically normal tissue from immediately surrounding the - tumor (peritumoral). - Handle: Specimen Tumor or Normal Category - Origin: caDSR - Value: Specimen Tumor or Normal Category - Specimen Type: - Desc: The kind of material that forms the sample as captured in the Ontology - for Biobanking (OBIB), a specimen subset of the Ontology for Biomedical - Investigations (OBI). - Enum: - - OBIB (By Reference) - Term: - - Code: '11253427' - Definition: The kind of material that forms the sample as captured in - the Ontology for Biobanking (OBIB), a specimen subset of the Ontology - for Biomedical Investigations (OBI). - Handle: Specimen Type - Origin: caDSR - Value: Specimen Type - Study Name: - Desc: "The narrative title used as a textual label for a research - data collection. Example – Comparative Molecular Life History - of Spontaneous Canine and Human Gliomas" - Term: - - Code: '11459810' - Definition: "The narrative title used as a textual label for a - research data collection. Example – Comparative Molecular Life - History of Spontaneous Canine and Human Gliomas" - Handle: Study Name - Origin: caDSR - Value: Study Name - Type: TBD - Study Short Name: - Desc: "The acronym or abbreviated form of the title for a research - data collection. Example – GLIOMA01" - Term: - - Code: '11459812' - Definition: "The acronym or abbreviated form of the title for a - research data collection. Example – GLIOMA01" - Handle: Study Short Name - Origin: caDSR - Value: Study Short Name - Type: TBD - Subject Age At Diagnosis: - Desc: Age at the time of diagnosis expressed in number of days since birth. - Term: - - Code: '10609539' - Definition: Age at the time of diagnosis expressed in number of days since - birth. - Handle: Subject Age At Diagnosis - Origin: caDSR - Value: Subject Age At Diagnosis - Type: TBD - Subject Race: - Desc: An arbitrary classification of a taxonomic group that is a division - of a species. It usually arises as a consequence of geographical isolation - within a species and is characterized by shared heredity, physical attributes - and behavior, and in the case of humans, by common history, nationality, - or geographic distribution. The provided values are based on the categories - defined by the U.S. Office of Management and Business and used by the - U.S. Census Bureau. - Enum: - - American Indian or Alaska Native - - Asian - - Black or African American - - Native Hawaiian or other Pacific Islander - - Not Reported - - Not allowed to collect - - Unknown - - White - Term: - - Code: '2192199' - Definition: An arbitrary classification of a taxonomic group that is a - division of a species. It usually arises as a consequence of geographical - isolation within a species and is characterized by shared heredity, - physical attributes and behavior, and in the case of humans, by common - history, nationality, or geographic distribution. The provided values - are based on the categories defined by the U.S. Office of Management - and Business and used by the U.S. Census Bureau. - Handle: Subject Race - Origin: caDSR - Value: Subject Race - Subject Reported Ethnicity: - Desc: An individual's self-described social and cultural grouping, specifically - whether an individual describes themselves as Hispanic or Latino. The - provided values are based on the categories defined by the U.S. Office - of Management and Business and used by the U.S. Census Bureau. - Enum: - - Hispanic or Latino - - Not Hispanic or Latino - - Not allowed to collect - - Not reported - - Unknown - Term: - - Code: '2192217' - Definition: An individual's self-described social and cultural grouping, - specifically whether an individual describes themselves as Hispanic - or Latino. The provided values are based on the categories defined - by the U.S. Office of Management and Business and used by the U.S. - Census Bureau. - Handle: Subject Reported Ethnicity - Origin: caDSR - Value: Subject Reported Ethnicity - Treatment Anatomic Site UBERON Identifier: - Desc: The UBERON identifier of the organ or part of the body targeted by a - therapeutic procedure. - Term: - - Code: '14461856' - Definition: The UBERON identifier of the organ or part of the body targeted - by a therapeutic procedure. - Handle: Treatment Anatomic Site UBERON Identifier - Origin: caDSR - Value: Treatment Anatomic Site UBERON Identifier - Type: TBD - Treatment Type: - Desc: A text term that describes the kind of medical care given to the patient - to mitigate or cure an illness, injury, or reduced health status. - Enum: - - 3-Dimensional Conformal Radiation Therapy - - Allogeneic Hematopoietic Stem Cell Transplantation - - Autologous Stem Cell Transplantation - - Chemotherapy - - Concurrent Chemoradiation - - Conventional Radiotherapy - - External Beam Radiation Therapy - - High-Dose Rate Brachytherapy - - Hormone Therapy - - Immunotherapy - - Intensity-Modulated Radiation Therapy - - Low-Dose Rate Brachytherapy - - Not Reported - - Pharmacotherapy - - Proton Beam Radiation Therapy - - Radiation Therapy - - Radiofrequency Ablation - - Stereotactic Body Radiation Therapy - - Stereotactic Radiosurgery - - Surgical Procedure - - Targeted Molecular Therapy - - Unknown - Term: - - Code: '14737565' - Definition: A text term that describes the kind of medical care given - to the patient to mitigate or cure an illness, injury, or reduced - health status. - Handle: Treatment Type - Origin: caDSR - Value: Treatment Type - Treatment or Therapy Indicator: - Desc: An indicator that describes whether therapy was administered. - Enum: - - 'No' - - Not Reported - - Unknown - - 'Yes' - Term: - - Code: '14713318' - Definition: An indicator that describes whether therapy was administered. - Handle: Treatment or Therapy Indicator - Origin: caDSR - Value: Treatment or Therapy Indicator - Tumor Grade: - Desc: A text term to express the degree of abnormality of cancer cells as - a measure of differentiation and aggressiveness. - Enum: - - G1 - - G2 - - G3 - - G4 - - GB - - GX - - High Grade - - Intermediate Grade - - Low Grade - - Not Applicable - - Not Reported - - Unknown - Term: - - Code: '11325685' - Definition: A text term to express the degree of abnormality of cancer - cells as a measure of differentiation and aggressiveness. - Handle: Tumor Grade - Origin: caDSR - Value: Tumor Grade - Vital Status: - Desc: "The participant’s survival state as being living or deceased." - Enum: - - Alive - - Dead - - Not reported - - Unknown - - Unspecified - Term: - - Code: '2847330' - Definition: "The participant’s survival state as being living or - deceased." - Handle: Vital Status - Origin: caDSR - Value: Vital Status - dbGaP Study Accession: - Desc: A stable unique alphanumeric identifier assigned to a study and any - objects by the database of Genotypes and Phenotypes (dbGaP). - Term: - - Code: '11524544' - Definition: A stable unique alphanumeric identifier assigned to a study - and any objects by the database of Genotypes and Phenotypes (dbGaP). - Handle: dbGaP Study Accession - Origin: caDSR - Value: dbGaP Study Accession - Type: TBD Relationships: {} -Terms: - '0': - Code: '2572624' - Definition: Fully active, able to carry on all pre-disease performance without - restriction. - Handle: '0' - Origin: caDSR - Value: '0' - '1': - Code: '2572286' - Definition: Restricted in physically strenuous activity but ambulatory and - able to carry out work of a light or sedentary nature, e.g., light house - work, office work. - Handle: '1' - Origin: caDSR - Value: '1' - '10': - Code: '2572612' - Definition: Moribund; fatal processes progressing rapidly. - Handle: '10' - Origin: caDSR - Value: '10' - '100': - Code: '2572603' - Definition: Normal; no complaints; no evidence of disease. - Handle: '100' - Origin: caDSR - Value: '100' - '2': - Code: '2572287' - Definition: Ambulatory and capable of all self care but unable to carry out - any work activities. Up and about more than 50% of waking hours. - Handle: '2' - Origin: caDSR - Value: '2' - '20': - Code: '2572611' - Definition: Very sick; hospitalization necessary; active support treatment - is necessary. - Handle: '20' - Origin: caDSR - Value: '20' - '3': - Code: '2572288' - Definition: Capable of only limited selfcare, confined to bed or chair more - than 50% of waking hours. - Handle: '3' - Origin: caDSR - Value: '3' - 3-Dimensional Conformal Radiation Therapy: - Code: '3245269' - Definition: A process by which a dose of radiation is automatically shaped - to closely conform to the entire volume of the tumor, so that surrounding - normal tissue is spared and treatment toxicity is decreased. - Handle: 3-Dimensional Conformal Radiation Therapy - Origin: caDSR - Value: 3-Dimensional Conformal Radiation Therapy - '30': - Code: '2572610' - Definition: Severely disabled; hospitalization is indicated, although death - not imminent. - Handle: '30' - Origin: caDSR - Value: '30' - '4': - Code: '2572289' - Definition: Completely disabled. Cannot carry on any selfcare. Totally confined - to bed or chair. - Handle: '4' - Origin: caDSR - Value: '4' - '40': - Code: '2572609' - Definition: Disabled; requires special care and assistance. - Handle: '40' - Origin: caDSR - Value: '40' - '5': - Code: '2570230' - Definition: Dead. - Handle: '5' - Origin: caDSR - Value: '5' - '50': - Code: '2572608' - Definition: Requires considerable assistance and frequent medical care. - Handle: '50' - Origin: caDSR - Value: '50' - '60': - Code: '2572607' - Definition: Requires occasional assistance, but is able to care for most personal - needs. - Handle: '60' - Origin: caDSR - Value: '60' - '70': - Code: '2572606' - Definition: Cares for self; unable to carry on normal activity or do active - work. - Handle: '70' - Origin: caDSR - Value: '70' - '80': - Code: '2572605' - Definition: Normal activity with effort; some sign or symptoms of disease. - Handle: '80' - Origin: caDSR - Value: '80' - '90': - Code: '2572604' - Definition: Able to carry on normal activity; minor signs or symptoms of disease. - Handle: '90' - Origin: caDSR - Value: '90' - AA: - Code: '2713414' - Definition: A degree granted by a two-year college on successful completion - of the undergraduates course of studies. - Handle: AA - Origin: caDSR - Value: AA - AAS: - Code: '2713415' - Definition: An associate's degree awarded to students who are permitted to - relax some of the general education requirements in order to study more - course work in their program area. This kind of degree is for students - who intend to enter the work force upon graduation. - Handle: AAS - Origin: caDSR - Value: AAS - AB: - Code: '2713414' - Definition: A degree granted by a two-year college on successful completion - of the undergraduates course of studies. - Handle: AB - Origin: caDSR - Value: AB - ABA: - Code: '2713413' - Definition: An associate's degree awarded upon completion of a course of study - usually lasting two years with a focus on business, including the processes - of interchanging goods and services (buying, selling and producing), business - organization, and accounting as used in profit-making and nonprofit public - and private institutions and agencies. - Handle: ABA - Origin: caDSR - Value: ABA - ABS Coordinator: - Code: '2573707' - Definition: ABS Coordinator - Handle: ABS Coordinator - Origin: caDSR - Value: ABS Coordinator - ADF: - Code: '11421996' - Definition: A tab-delimited file defining how each array in an investigation - is used. This data includes what sequence is located at each position - in an array and what the annotation of this sequence is; cross-references - to entries in a public repository can be used if available. - Handle: ADF - Origin: caDSR - Value: ADF - AE: - Code: '2713412' - Definition: An associate's degree awarded upon completion of a course of study - usually lasting two years with a focus on engineering. - Handle: AE - Origin: caDSR - Value: AE - AM: - Code: '2713434' - Definition: An academic degree in a nonscience subject, usually awarded after - one or two years of postgraduate study. - Handle: AM - Origin: caDSR - Value: AM - APL Differentiation Syndrome: - Code: '4770854' - Definition: A syndrome observed in patients with acute promyelocytic leukemia - treated with all-trans retinoic acid. It is characterized by weight gain, - dyspnea, pleural and pericardial effusions, leukocytosis, and renal failure. - Handle: APL Differentiation Syndrome - Origin: caDSR - Value: APL Differentiation Syndrome - AR: - Code: '7552086' - Definition: An eye examination method in which a computer-controlled electronic - optometer is used to automatically measure refractive error. - Handle: AR - Origin: caDSR - Value: AR - AS: - Code: '2582158' - Definition: The use of an angioscope to view the interior of a blood vessel. - Handle: AS - Origin: caDSR - Value: AS - ASMT: - Code: '12057185' - Definition: The results of an assessment or the content of one or more standard - operating procedures (SOP) instance(s). - Handle: ASMT - Origin: caDSR - Value: ASMT - AU: - Code: '2582145' - Definition: The process of recording sound to a storage device. - Handle: AU - Origin: caDSR - Value: AU - AVI: - Code: '11421997' - Definition: A multimedia container format for audio video interleaved (AVI) - files that allows for synchronous audio-with-video playback. - Handle: AVI - Origin: caDSR - Value: AVI - Abstractor: - Code: '2580450' - Definition: A person who retrieves and summarizes information. - Handle: Abstractor - Origin: caDSR - Value: Abstractor - Accidental death: - Code: '2769015' - Definition: 'An unforeseen and unplanned event or circumstance frequently - causing loss or injury.: The absence of life or state of being dead.' - Handle: Accidental death - Origin: caDSR - Value: Accidental death - Account Administrator: - Code: '2573706' - Definition: A person who is responsible for establishing and managing user - accounts. Duties include accepts/rejects membership to an account, assigns - and edits access permissions and resets/revokes user passwords. - Handle: Account Administrator - Origin: caDSR - Value: Account Administrator - Acute GVHD: - Code: '2769014' - Definition: A syndrome of immunologically mediated tissue damage that may - occur following an allogeneic transplant, usually affecting the skin, - liver, and GI tract. The onset is usually within one hundred days of transplantation - or immunologic manipulation. - Handle: Acute GVHD - Origin: caDSR - Value: Acute GVHD - AdEERS Contact: - Code: '2578751' - Definition: A person responsible within the Cooperative Group and/or a particular - clinical trial for the completion and filing of reports (along with any - supporting documentation) on adverse events to NCI and FDA via web-based - Adverse Event Expedited Reporting System (AdEERS). - Handle: AdEERS Contact - Origin: caDSR - Value: AdEERS Contact - Address Module Coordinator: - Code: '2573704' - Definition: A person who coordinates and manages address and contact information - for an organization. - Handle: Address Module Coordinator - Origin: caDSR - Value: Address Module Coordinator - Admitting Physician: - Code: '2578752' - Definition: The physician responsible for the admission of a patient to a - hospital or other inpatient health institution. The admitting physician - evaluates patients, makes admitting decisions and assesses diagnostic - and treatment plans. - Handle: Admitting Physician - Origin: caDSR - Value: Admitting Physician - Adult Respiratory Distress Syndrome (ARDS): - Code: '2769013' - Definition: fulminant pulmonary interstitial and alveolar edema resulting - from diffuse infection, shock, or trauma of the lungs. - Handle: Adult Respiratory Distress Syndrome (ARDS) - Origin: caDSR - Value: Adult Respiratory Distress Syndrome (ARDS) - Adverse Event: - Code: '5207091' - Definition: Any unfavorable or unintended disease, sign, or symptom (including - an abnormal laboratory finding) that is temporally associated with the - use of a medical treatment or procedure, and that may or may not be considered - related to the medical treatment or procedure. Such events can be related - to the intervention, dose, route of administration, patient, or caused - by an interaction with another drug(s) or procedure(s). - Handle: Adverse Event - Origin: caDSR - Value: Adverse Event - Adverse Event Coordinator: - Code: '2573705' - Definition: A designated person who is trained and responsible for coordinating - adverse event review, tracking, surveillance and reporting activities - within a clinical institution or clinical trial. - Handle: Adverse Event Coordinator - Origin: caDSR - Value: Adverse Event Coordinator - Agent Expert: - Code: '2578753' - Definition: A scientist or other professional who is an independent, non-participant - in the agent development effort. The person is responsible for contributing - expert advice on the scientific design and on the conduct of the research - regarding the investigational agent. - Handle: Agent Expert - Origin: caDSR - Value: Agent Expert - Agent Inspector: - Code: '2578754' - Definition: An authorized person who is appointed to audit and officially - inspect the warehousing, prescribing, dispensing, distribution, administration - and documentation practices related to utilization of investigational - agent(s) within a clinical study or/and institution, in order to confirm - the strict drug(s) accountability and to ensure patients safety and the - clinical site compliance with protocol(s) and federal drug laws and regulations. - Handle: Agent Inspector - Origin: caDSR - Value: Agent Inspector - Alive: - Code: '2580948' - Definition: Showing characteristics of life; displaying signs of life. - Handle: Alive - Origin: caDSR - Value: Alive - Allogeneic Hematopoietic Stem Cell Transplantation: - Code: '2688157' - Definition: A clinical treatment in which HSC capable of reconstituting the - immune system and blood production (hematopoiesis) are transferred from - one genetically dissimilar individual to another. The donor and recipient - may or may not be related. 2005 - Handle: Allogeneic Hematopoietic Stem Cell Transplantation - Origin: caDSR - Value: Allogeneic Hematopoietic Stem Cell Transplantation - Alternative Principal Investigator: - Code: '13552913' - Definition: Available in place of something else._An investigator who is responsible - for all aspects of the conduct of a study. - Handle: Alternative Principal Investigator - Origin: caDSR - Value: Alternative Principal Investigator - American Indian or Alaska Native: - Code: '2572232' - Definition: A person having origins in any of the original peoples of North - and South America (including Central America) and who maintains tribal - affiliation or community attachment. (OMB) - Handle: American Indian or Alaska Native - Origin: caDSR - Value: American Indian or Alaska Native - Asbestos Exposure: - Code: '6608022' - Definition: Inhalation of asbestos fibers. - Handle: Asbestos Exposure - Origin: caDSR - Value: Asbestos Exposure - Asian: - Code: '2572233' - Definition: A person having origins in any of the original peoples of the - Far East, Southeast Asia, or the Indian subcontinent, including for example, - Cambodia, China, India, Japan, Korea, Malaysia, Pakistan, the Philippine - Islands, Thailand, and Vietnam. (OMB) - Handle: Asian - Origin: caDSR - Value: Asian - Aspiration Pneumonia: - Code: '3604295' - Definition: Pneumonia secondary to aspiration of liquids and gastric contents - into the lungs. - Handle: Aspiration Pneumonia - Origin: caDSR - Value: Aspiration Pneumonia - Associate: - Code: '2573577' - Definition: A person who is an assistant or subordinate to another professional, - e.g. research associate functioning under the general supervision of the - appointed investigator. - Handle: Associate - Origin: caDSR - Value: Associate - Attending Physician: - Code: '2569168' - Definition: The physician responsible for the administration and medical care - a patient receives. The physician may have the added responsibility of - supervising resident physicians or medical students, and involving consulting - physicians in the prescribed plan of care. - Handle: Attending Physician - Origin: caDSR - Value: Attending Physician - Audiologist: - Code: '2576279' - Definition: A trained non-medical health professional who specializes in the - identification, testing, habilitation and rehabilitation of hearing loss - and other auditory and balance disorders. Particularly, an audiologist - may be involved in diagnostic and screening procedures to determine hearing - deficits, as well as in assessment of amplification devices and instruction - in their care, training in speechreading, and may serve as consultant - to government and industry on issues concerning environmental, noise-induced - hearing loss. Certification requirements for clinical audiology professional - are currently defined at a single level - Certificate of Clinical Competency. - Handle: Audiologist - Origin: caDSR - Value: Audiologist - Autologous Stem Cell Transplantation: - Code: '2688156' - Definition: The transference of stem cells within the same individual. - Handle: Autologous Stem Cell Transplantation - Origin: caDSR - Value: Autologous Stem Cell Transplantation - Autopsy: - Code: '2567287' - Definition: Autopsy; an examination and dissection of a dead body to determine - cause of death or the changes produced by disease. - Handle: Autopsy - Origin: caDSR - Value: Autopsy - BA: - Code: '2573111' - Definition: Bachelor of Arts - Handle: BA - Origin: caDSR - Value: BA - BAI: - Code: '11421998' - Definition: An index file found in the same directory as the binary alignment - map (BAM) file, a compressed binary version of a sequence alignment/map - (SAM) file. - Handle: BAI - Origin: caDSR - Value: BAI - BAM: - Code: '6356231' - Definition: A binary representation of a sequence alignment map (SAM), a compact - and indexable representation of nucleotide sequence alignments, compressed - by the BGZF (Blocked GNU Zip Format) library. - Handle: BAM - Origin: caDSR - Value: BAM - BBA: - Code: '2713410' - Definition: A bachelor's degree in business studies. In most universities, - the degree is conferred upon a student after four years of full-time study - (120 credit hours) in one or more areas of business concentrations. The - BBA program usually includes general business courses and advanced courses - for specific concentrations. - Handle: BBA - Origin: caDSR - Value: BBA - BCNU IP: - Code: '3854252' - Definition: "An antineoplastic nitrosourea. Carmustine alkylates and cross-links - DNA during all phases of the cell cycle, resulting in disruption of - DNA function, cell cycle arrest, and apoptosis. This agent also carbamoylates - proteins, including DNA repair enzymes, resulting in an enhanced cytotoxic - effect. Carmustine is highly lipophilic and crosses the blood-brain - barrier readily. (NCI04): Inflammation of interstitial lung tissue, - usually associated with infection.\r\n" - Handle: BCNU IP - Origin: caDSR - Value: BCNU IP - BCR Biotab: - Code: '11421999' - Definition: Files that consist of aggregate clinical and biospecimen data - across all cases of the given project. Biotab files are supplemental files - that are available in the Genomic Data Commons (GDC) Legacy Archive as - tab-delimited files on a project level basis. These may also include fields - that are not available in the GDC application programming interface (API). - Handle: BCR Biotab - Origin: caDSR - Value: BCR Biotab - BDUS: - Code: '12057439' - Definition: The use of quantitative ultrasound for estimating bone mineral - density status of the peripheral skeleton, usually done at the heel. - Handle: BDUS - Origin: caDSR - Value: BDUS - BE: - Code: '2713409' - Definition: A bachelor's degree in engineering awarded to a student after - three, four or five years of studying engineering at an accredited university. - It is a professional degree that involves a requirement for undertaking - some engineering work. - Handle: BE - Origin: caDSR - Value: BE - BED: - Code: '11422000' - Definition: A tab-delimited text file format that allows the specification - of the sequence data that is displayed in an annotation track. The minimum - required information is chromosome, start position, and end position. - Handle: BED - Origin: caDSR - Value: BED - BEDPE Format: - Code: '14535229' - Definition: A text file format used to store genomic paired-end sequencing - data that includes coordinates and associated metadata. - Handle: BEDPE Format - Origin: caDSR - Value: BEDPE Format - BEd: - Code: '2713408' - Definition: 'A bachelor''s degree in education awarded to students seeking - training to become teachers in primary and secondary schools. ' - Handle: BEd - Origin: caDSR - Value: BEd - BEng: - Code: '2713409' - Definition: A bachelor's degree in engineering awarded to a student after - three, four or five years of studying engineering at an accredited university. - It is a professional degree that involves a requirement for undertaking - some engineering work. - Handle: BEng - Origin: caDSR - Value: BEng - BFA: - Code: '2713407' - Definition: A bachelor's degree in arts awarded to students seeking a professional - education in the visual or performing arts. - Handle: BFA - Origin: caDSR - Value: BFA - BI: - Code: '2582121' - Definition: An imaging technique that use non-invasive measurements to map - biologically-generated magnetic fields. - Handle: BI - Origin: caDSR - Value: BI - BIOM: - Code: '11422059' - Definition: A general-use format for representing biological sample by observation - contingency tables. It is designed for general use in broad areas of comparative - -omics. The primary use of this format is to represent operational taxonomic - unit (OTU) and metagenome tables. - Handle: BIOM - Origin: caDSR - Value: BIOM - BMD: - Code: '12057440' - Definition: Any method used to measure bone mineral content and density. - Handle: BMD - Origin: caDSR - Value: BMD - BN: - Code: '2713406' - Definition: A four year academic degree in the science and principles of nursing, - granted by a tertiary education university or similarly accredited school. - Handle: BN - Origin: caDSR - Value: BN - BS: - Code: '2573112' - Definition: Bachelor of Science - Handle: BS - Origin: caDSR - Value: BS - BSL: - Code: '2713405' - Definition: A special-purpose degree that allows someone who has some prior - studies but not achieved a bachelor's degree to resume their education - and pursue the study of law towards an eventual Juris Doctor degree. - Handle: BSL - Origin: caDSR - Value: BSL - BSN: - Code: '2713406' - Definition: A four year academic degree in the science and principles of nursing, - granted by a tertiary education university or similarly accredited school. - Handle: BSN - Origin: caDSR - Value: BSN - BSW: - Code: '2713404' - Definition: A bachelor's degree awarded to someone who has successfully completed - undergraduate studies in psychosocial evaluation and intervention, including - therapy, to effect a change in the feelings, attitudes and behavior of - a client, whether an individual, group or community. - Handle: BSW - Origin: caDSR - Value: BSW - BT: - Code: '2713403' - Definition: A bachelor's degree in theological disciplines. Candidates for - this degree typically must complete course work in Greek or Hebrew, as - well as systematic theology, biblical theology, ethics, homiletics and - Christian ministry. - Handle: BT - Origin: caDSR - Value: BT - Bacterial infection: - Code: '2769012' - Definition: infections and associated diseases by bacteria, general or unspecified. - Handle: Bacterial infection - Origin: caDSR - Value: Bacterial infection - Binary Format: - Code: '11422004' - Definition: A file format in which file information is stored in the form - of ones and zeros. It can be easily converted to text representations - for visualization and editing. - Handle: Binary Format - Origin: caDSR - Value: Binary Format - Biochemical: - Code: '14527469' - Definition: An indication that biochemical markers of a disease are present. - Handle: Biochemical - Origin: caDSR - Value: Biochemical - Biochemical evidence of disease without structural correlate: - Code: '13254014' - Definition: An indication that biochemical markers of a disease are present - but morphological markers are absent. - Handle: Biochemical evidence of disease without structural correlate - Origin: caDSR - Value: Biochemical evidence of disease without structural correlate - Biopsy: - Code: '5476777' - Definition: The removal of tissue specimens or fluid from the living body - for microscopic examination, performed to establish a diagnosis. - Handle: Biopsy - Origin: caDSR - Value: Biopsy - Bish.: - Code: '2573582' - Definition: A courtesy title for a person who supervises a number of local - churches or a diocese, being in the Greek, Roman Catholic, Anglican, and - other churches a member of the highest order of the ministry. - Handle: Bish. - Origin: caDSR - Value: Bish. - Black or African American: - Code: '2572313' - Definition: A person having origins in any of the Black racial groups of Africa. - Terms such as "Haitian" or "Negro" can be used in addition to "Black or - African American". (OMB) - Handle: Black or African American - Origin: caDSR - Value: Black or African American - Blood Sample: - Code: '6689599' - Definition: A small volume of blood removed for testing or storage. - Handle: Blood Sample - Origin: caDSR - Value: Blood Sample - Bone Marrow Aspirate: - Code: '6699943' - Definition: Aspirate from bone marrow. - Handle: Bone Marrow Aspirate - Origin: caDSR - Value: Bone Marrow Aspirate - Br.: - Code: '2576359' - Definition: A courtesy title for a member of a religious order, fraternity, - movement, or other group. - Handle: Br. - Origin: caDSR - Value: Br. - Branch Chief: - Code: '2578755' - Definition: A professional that is responsible for the direction and supervision - of a division within a larger or more complex organization. - Handle: Branch Chief - Origin: caDSR - Value: Branch Chief - Bronchoscopist: - Code: '2576280' - Definition: Bronchoscopist; a doctor or technician who operates a bronchoscope. - Handle: Bronchoscopist - Origin: caDSR - Value: Bronchoscopist - CD: - Code: '2582122' - Definition: The use of pulsed ultrasound to visualize blood flow through blood - vessels. Flow direction and speed are shown in differing colors. - Handle: CD - Origin: caDSR - Value: CD - CDU Web Contact: - Code: '2578756' - Definition: A person within a Cooperative Group, institution, clinical site, - or/and particular study responsible for completion and submission of clinical - trial data to the NCI via the web-based Clinical Data Update System (CDUS). - Handle: CDU Web Contact - Origin: caDSR - Value: CDU Web Contact - CEL: - Code: '12135194' - Definition: A type of file that stores the results of intensity calculations - of pixel values for DNA microarray image analysis. The data includes an - intensity value, standard deviation of the intensity, the number of pixels - used to calculate the intensity value, a flag to indicate an outlier as - calculated by the algorithm, and a user defined flag indicating whether - the feature should be excluded from future analysis. The file also stores - the previously stated data for each feature on the probe array. - Handle: CEL - Origin: caDSR - Value: CEL - CEP Member: - Code: '2578757' - Definition: A member of the multidisciplinary Concept Evaluation Panel (CEP) - organized under the leadership of the NCI Cancer Therapy Evaluation Program - to evaluate Phase III clinical trial proposals. Membership includes NCI - staff and representatives of NCI-sponsored Cooperative Groups and Cancer - Centers, as well as other sources. Two-thirds of the CEP members (clinicians, - basic scientists, statisticians, other oncology professionals, and patient - advocates) are not affiliated with NCI. - Handle: CEP Member - Origin: caDSR - Value: CEP Member - CF: - Code: '2582155' - Definition: Cinefluorography (retired) - Handle: CF - Origin: caDSR - Value: CF - CP: - Code: '2582160' - Definition: Endoscopic examination of the uterine cervix and vagina. - Handle: CP - Origin: caDSR - Value: CP - CR: - Code: '2582119' - Definition: X-ray imaging that replaces film with a phosphor imaging plate - to create a digital image. - Handle: CR - Origin: caDSR - Value: CR - CRAI: - Code: '12517496' - Definition: An external index file created by the sequencing data archive - alongside a compressed reference-oriented alignment map (CRAM) file. This - index file is available in the same directory as the CRAM file and is - required for selective access to the genomic sequence alignment data within - the CRAM file. - Handle: CRAI - Origin: caDSR - Value: CRAI - CRAM: - Code: '11422061' - Definition: A more highly compressed alternative to the BAM and SAM DNA sequence - alignment file formats. It uses reference based compression, with only - base calls that differ from a designated reference sequence being stored. - Handle: CRAM - Origin: caDSR - Value: CRAM - CS: - Code: '2569349' - Definition: Endoscopic examination of the urinary bladder or urethra. - Handle: CS - Origin: caDSR - Value: CS - CSV: - Code: '7797849' - Definition: A text file format that separates data elements with commas. - Handle: CSV - Origin: caDSR - Value: CSV - CT: - Code: '2575842' - Definition: A method of examining body organs by scanning them with X rays - and using a computer to construct a series of cross-sectional scans along - a single axis. - Handle: CT - Origin: caDSR - Value: CT - CTPROTOCOL: - Code: '12057441' - Definition: The rules and procedures for computed tomography acquisition. - Handle: CTPROTOCOL - Origin: caDSR - Value: CTPROTOCOL - Cancer Related: - Code: '14473325' - Definition: A death attributed to the progression of a cancer-related pathologic - condition. - Handle: Cancer Related - Origin: caDSR - Value: Cancer Related - Cardiac Disease: - Code: '3181118' - Definition: A non-neoplastic or neoplastic disorder that affects the heart - and/or the pericardium. Representative examples include endocarditis, - pericarditis, atrial myxoma, cardiac myeloid sarcoma, and pericardial - malignant mesothelioma. - Handle: Cardiac Disease - Origin: caDSR - Value: Cardiac Disease - Cardiac failure: - Code: '2718360' - Definition: Inability of the heart to pump blood at an adequate rate to meet - tissue metabolic requirements or the ability to do so only at an elevated - filling pressure. - Handle: Cardiac failure - Origin: caDSR - Value: Cardiac failure - Cardiopulmonary Arrest: - Code: '3604293' - Definition: Cessation of breathing and/or cardiac function. - Handle: Cardiopulmonary Arrest - Origin: caDSR - Value: Cardiopulmonary Arrest - Cardiovascular Disorder: - Code: '2630208' - Definition: A non-neoplastic or neoplastic disorder affecting the heart or - the vessels (arteries, veins and lymph vessels). Representative examples - of non-neoplastic cardiovascular disorders are endocarditis and hypertension. Representative - examples of neoplastic cardiovascular disorders are endocardial myxoma - and angiosarcoma. -- 2003 - Handle: Cardiovascular Disorder - Origin: caDSR - Value: Cardiovascular Disorder - Cardiovascular accident: - Code: '3837932' - Definition: A sudden loss of neurologic function secondary to hemorrhagic - or ischemia in the brain parenchyma due to a vascular event. Infarction - or hemorrhage may be demonstrated either directly by imaging,laboratory, - or pathologic examination in patients with symptom duration less than - 24 hours, or inferred by symptoms lasting greater than or equal to 24 - hours (or fatal within 24 hours) that cannot be attributed to another - cause. Diagnostic tests include CT scan, MRI, angiography, and EEG to - locate and evaluate the extent of the hemorrhagic or ischemic damage in - the brain parenchyma, coagulation studies, complete blood count, comprehensive - metabolic panel, and urinalysis. - Handle: Cardiovascular accident - Origin: caDSR - Value: Cardiovascular accident - Central Reviewer: - Code: '2576281' - Definition: A single person who critically evaluates and reports on laboratory - test results, protocols , or other data. - Handle: Central Reviewer - Origin: caDSR - Value: Central Reviewer - Central nervous system(CNS) failure: - Code: '2769009' - Definition: 'The main information-processing organs of the nervous system, - consisting of the brain, spinal cord, and meninges.: loss of ability to - function normally.' - Handle: Central nervous system(CNS) failure - Origin: caDSR - Value: Central nervous system(CNS) failure - Ch.: - Code: '2573583' - Definition: A courtesy title for an ecclesiastic attached to the chapel of - a royal court, college, etc., or to a military unit. - Handle: Ch. - Origin: caDSR - Value: Ch. - Checklist Completer: - Code: '2573701' - Definition: A person that is responsible for the completion of forms that - contain a list of information regarding procedure or content validation. - Handle: Checklist Completer - Origin: caDSR - Value: Checklist Completer - Checklist Supervisor: - Code: '2578758' - Definition: A person who is responsible for directing personnel involved with - the coordination and completion of forms that contain a list of information - regarding procedure or content validation. - Handle: Checklist Supervisor - Origin: caDSR - Value: Checklist Supervisor - Chemical Exposure: - Code: '4394583' - Definition: Contact with a chemical substance through touch, inhalation, or - ingestion. - Handle: Chemical Exposure - Origin: caDSR - Value: Chemical Exposure - Chemotherapy: - Code: '5102333' - Definition: The use of synthetic or naturally-occurring chemicals for the - treatment of diseases. - Handle: Chemotherapy - Origin: caDSR - Value: Chemotherapy - Chronic GVHD: - Code: '2769010' - Definition: A syndrome of immunologically mediated tissue damage that may - occur following an allogeneic transplant, and may affect multiple organs - with manifestations similar to autoimmune diseases. The onset is usually - within three years of transplantation or immunologic manipulation. - Handle: Chronic GVHD - Origin: caDSR - Value: Chronic GVHD - Chronic Obstructive Pulmonary Disease: - Code: '3385484' - Definition: A chronic and progressive lung disorder characterized by the loss - of elasticity of the bronchial tree and the air sacs, destruction of the - air sacs wall, thickening of the bronchial wall, and mucous accumulation - in the bronchial tree. The pathologic changes result in the disruption - of the air flow in the bronchial airways. Signs and symptoms include shortness - of breath, wheezing, productive cough, and chest tightness. The two main - types of chronic obstructive pulmonary disease are chronic obstructive - bronchitis and emphysema. - Handle: Chronic Obstructive Pulmonary Disease - Origin: caDSR - Value: Chronic Obstructive Pulmonary Disease - Chronic liver disease: - Code: '3837931' - Definition: Signs of chronic liver disease which include jaundice, ascites, - palmar erythema, spider hemangiomas, gynecomastia, and encephalopathy. - Handle: Chronic liver disease - Origin: caDSR - Value: Chronic liver disease - Clinical Coordinator: - Code: '2578759' - Definition: A person to whom a clinical investigator delegates a few of the - routine administrative requirements of a protocol. The duties and responsibilities - of a clinical research coordinator may vary across different infrastructures. - Generally, the coordinator manages the subject's clinical trial participation - and provides a vital linkage between the subject, the investigator, and - the sponsor. - Handle: Clinical Coordinator - Origin: caDSR - Value: Clinical Coordinator - Clinical Nurse Specialist: - Code: '2918943' - Definition: Clinical Nurse Specialist (CNS) - a licensed registered nurse - who has graduate preparation (a master's or a doctorate) in nursing as - a CNS. The CNS is a clinical expert in theory-based and/or research-based - nursing practice within a specialty area. (NACNS) - Handle: Clinical Nurse Specialist - Origin: caDSR - Value: Clinical Nurse Specialist - Clinical Research Associate: - Code: '2573713' - Definition: A person who is employed by a study sponsor or by a contract research - organization (CRO), operates independently from the clinical study site - and functions as a monitor, and/or auditor, and/or a project director - within a particular trial or institution. - Handle: Clinical Research Associate - Origin: caDSR - Value: Clinical Research Associate - Co-Investigator: - Code: '2578760' - Definition: One of two or more scientists working together on a research project. - A person that equally contributes to the preparation of the protocol, - and shares the responsibilities of this position, including medical monitoring - (particularly toxicity/safety), liaison with statisticians over analysis, - and the generation of a report containing the results. - Handle: Co-Investigator - Origin: caDSR - Value: Co-Investigator - Co-Project Officer: - Code: '2578761' - Definition: One of two or more people who has authority concerning the content, - organization, or administration of a clinical trial or other work. - Handle: Co-Project Officer - Origin: caDSR - Value: Co-Project Officer - Community Educator: - Code: '2578762' - Definition: A person that provides coordination between physicians, hospital - staff, and administration in the implementation of programs that are to - develop and deliver a range of education and information to both patients - and healthcare personnel. - Handle: Community Educator - Origin: caDSR - Value: Community Educator - Compressed: - Code: '11480563' - Definition: A file containing data that is in a compressed state. - Handle: Compressed - Origin: caDSR - Value: Compressed - Concept Review Chair: - Code: '2573714' - Definition: The presiding officer who examines abstract or generic ideas generalized - from particular instances. - Handle: Concept Review Chair - Origin: caDSR - Value: Concept Review Chair - Concurrent Chemoradiation: - Code: '13328537' - Definition: Treatment in which radiation therapy is administered at the same - time as chemotherapy. - Handle: Concurrent Chemoradiation - Origin: caDSR - Value: Concurrent Chemoradiation - Congestive Heart Failure: - Code: '2565944' - Definition: Failure of the heart to pump a sufficient amount of blood to meet - the needs of the body tissues, resulting in tissue congestion and edema. - Signs and symptoms include shortness of breath, pitting edema, enlarged - tender liver, engorged neck veins, and pulmonary rales. - Handle: Congestive Heart Failure - Origin: caDSR - Value: Congestive Heart Failure - Consulting Physician: - Code: '2576282' - Definition: A physician that has expertise in a specific medical disciple - that can offer expertise or advice to other physicians and healthcare - providers. - Handle: Consulting Physician - Origin: caDSR - Value: Consulting Physician - Contact Person: - Code: '2576382' - Definition: a channel for communication between groups - Handle: Contact Person - Origin: caDSR - Value: Contact Person - Contract Officer: - Code: '2578765' - Definition: A person with the authority to enter into, administer, and/or - terminate contracts and make related determinations and findings. - Handle: Contract Officer - Origin: caDSR - Value: Contract Officer - Contract Principal Investigator: - Code: '2578766' - Definition: A scientist or health care professional that has a financial agreement, - as outlined in a binding statement of work, with the sponsor to bear full - and ultimate responsibility for the scientific, administrative, ethical, - legal, technical, and fiscal aspects of the study, and for day-to-day - management of the scientific project, as well as for documenting and reporting - its results. - Handle: Contract Principal Investigator - Origin: caDSR - Value: Contract Principal Investigator - Conventional Radiotherapy: - Code: '7735393' - Definition: A course of radiotherapy where minimal imaging support (i.e. X-rays - films) is used to determine the positioning of radiotherapy. - Handle: Conventional Radiotherapy - Origin: caDSR - Value: Conventional Radiotherapy - Coordinating Investigator: - Code: '2576283' - Definition: A research scientist whose task is to see that work, or events, - goes harmoniously. - Handle: Coordinating Investigator - Origin: caDSR - Value: Coordinating Investigator - Coordinator: - Code: '7607366' - Definition: A person responsible for organizing multiple events or efforts - into a smaller number of tasks. - Handle: Coordinator - Origin: caDSR - Value: Coordinator - Core Biopsy: - Code: '3346664' - Definition: The removal of a tissue sample using a needle with a relatively - large diameter, for microscopic examination. - Handle: Core Biopsy - Origin: caDSR - Value: Core Biopsy - Coronary artery disease (atherosclerosis): - Code: '2760269' - Definition: An imbalance between myocardial functional requirements and the - capacity of the coronary vessels to supply sufficient blood flow. It is - a form of MYOCARDIAL ISCHEMIA (insufficient blood supply to the heart - muscle) caused by a decreased capacity of the coronary vessels. - Handle: Coronary artery disease (atherosclerosis) - Origin: caDSR - Value: Coronary artery disease (atherosclerosis) - Cystoscopy: - Code: '2569349' - Definition: Endoscopic examination of the urinary bladder or urethra. - Handle: Cystoscopy - Origin: caDSR - Value: Cystoscopy - DBA: - Code: '2713402' - Definition: A research doctorate that focuses upon business practice. The - DBA, like the Ph.D, often requires significant coursework beyond that - required at the masters level. - Handle: DBA - Origin: caDSR - Value: DBA - DC: - Code: '2713401' - Definition: The Doctor of Chiropractic degree is a degree awarded for graduates - who have completed a medical doctoral program in accredited chiropractic - college. The academic and clinical training include, but are not limited - to, the use of current diagnostic and therapeutic procedures that specifically - involve the adjustment and manipulation of the articulations and adjacent - tissues of the human body, particularly of the spinal column. State laws, - as well as the nation's antitrust laws, may allow Doctors of Chiropractic - to utilize ancillary health care procedures commonly referred to as being - in the common domain. - Handle: DC - Origin: caDSR - Value: DC - DD: - Code: '2582123' - Definition: An ultrasound technique that uses a B-mode transducer to visualize - blood flow and a Doppler probe to assess velocity and direction of the - blood flow. - Handle: DD - Origin: caDSR - Value: DD - DDS: - Code: '2713763' - Definition: The Doctor of Dental Surgery degree is the first-professional, - postgraduate degree awarded for graduates who have completed a program - of studies in dental surgery. - Handle: DDS - Origin: caDSR - Value: DDS - DED: - Code: '2713398' - Definition: A professional doctorate that prepares the student for academic, - administrative or specialized positions in education. - Handle: DED - Origin: caDSR - Value: DED - DF: - Code: '2582156' - Definition: Digital fluoroscopy (retired) - Handle: DF - Origin: caDSR - Value: DF - DG: - Code: '2582124' - Definition: Examination of a body part by transillumination. - Handle: DG - Origin: caDSR - Value: DG - DICOM: - Code: '2967848' - Definition: A comprehensive set of standards for communications between medical - imaging devices, including handling, storing and transmitting information - in medical imaging. It includes a file format definition and a network - communication protocol. - Handle: DICOM - Origin: caDSR - Value: DICOM - DM: - Code: '2582161' - Definition: Microscopy that uses a digital camera instead of eyepieces. The - microscope is connected to a computer monitor and images are obtained - in real time. - Handle: DM - Origin: caDSR - Value: DM - DMD: - Code: '2713397' - Definition: The Doctor of Dental Medicine degree is the first-professional, - postgraduate degree awarded for graduates who have completed a program - of studies in dental medical science. The academic standard is equivalent - to Ph.D. - Handle: DMD - Origin: caDSR - Value: DMD - DMS: - Code: '12057442' - Definition: A noninvasive diagnostic procedure that allows for in vivo microscopic - examination of the epidermis, the dermoepidermal junction, and the papillary - dermis. This aids in the identification of specific diagnostic patterns - related to color and cell structure to aid in differentiating malignant - and benign lesions. - Handle: DMS - Origin: caDSR - Value: DMS - DO: - Code: '2713395' - Definition: The Doctor of Osteopathic Medicine degree is the first-professional, - postgraduate degree awarded to the graduates who have completed an osteopathic - medicine program which is designed to prepare physicians who are especially - concerned with maintaining continuing personal relationships with patients, - their families and their optimum interaction with the community environmental - patterns. - Handle: DO - Origin: caDSR - Value: DO - DOC: - Code: '2929970' - Definition: An organized collection of records that describe a particular - body of data. - Handle: DOC - Origin: caDSR - Value: DOC - DOCX: - Code: '11422062' - Definition: A file type that uses Open XML Document format to store data for - Microsoft Word and other compatible programs. - Handle: DOCX - Origin: caDSR - Value: DOCX - DPM: - Code: '2713762' - Definition: The Doctor of Podiatric Medicine degree is the first-professional, - postgraduate degree awarded to the graduates who have completed an podiatric - medicine program which is designed to prepare physicians who prevent, - diagnose, and treat diseases and disorders that affect the human foot - and ankle. - Handle: DPM - Origin: caDSR - Value: DPM - DS: - Code: '2582154' - Definition: Digital Subtraction Angiography (retired) - Handle: DS - Origin: caDSR - Value: DS - DSV: - Code: '11422063' - Definition: A delimiter-separated values file that contains plain text data - divided into rows and columns by a designated special character. - Handle: DSV - Origin: caDSR - Value: DSV - DSW: - Code: '2713437' - Definition: A doctoral degree for experienced social work practitioners in - advanced practice, research and/or policy analysis (although some DSW - recipients are not social workers). Much of the course work emphasizes - qualitative and quantitative analysis methods. The degree typically leads - to teaching, research, leadership roles in agencies, or self-employed - social work practice. - Handle: DSW - Origin: caDSR - Value: DSW - DVM: - Code: '2573115' - Definition: Doctor of Veterinary Medicine - Handle: DVM - Origin: caDSR - Value: DVM - DX: - Code: '2582137' - Definition: Acquisition or display of radiographic images using digital techniques. - Handle: DX - Origin: caDSR - Value: DX - Data Manager: - Code: '2569218' - Definition: A person primarily responsible for database creation, data collection, - validation, integration, coding, review, quality evaluation, and archiving, - as well as for preparation of reports and data displays. - Handle: Data Manager - Origin: caDSR - Value: Data Manager - Data Submitter: - Code: '14616433' - Definition: An individual that prepares and submits data. - Handle: Data Submitter - Origin: caDSR - Value: Data Submitter - Dead: - Code: '2847328' - Definition: The absence of life or state of being dead. - Handle: Dead - Origin: caDSR - Value: Dead - Decline to answer: - Code: '2577233' - Definition: Used to indicate when a respondent makes a decision to not answer - a question. - Handle: Decline to answer - Origin: caDSR - Value: Decline to answer - Dementia (including Alzheimer's disease): - Code: '3165569' - Definition: An acquired organic mental disorder with loss of intellectual - abilities of sufficient severity to interfere with social or occupational - functioning. The dysfunction is multifaceted and involves memory, behavior, - personality, judgment, attention, spatial relations, language, abstract - thought, and other executive functions. The intellectual decline is usually - progressive, and initially spares the level of consciousness. - Handle: Dementia (including Alzheimer's disease) - Origin: caDSR - Value: Dementia (including Alzheimer's disease) - Developer: - Code: '2638256' - Definition: A person or organization that designs software and writes the - programs. Software development includes the design of the user interface - and the program architecture as well as programming the source code. A - somewhat broader scope of computer programming or a specialty of project - managing. - Handle: Developer - Origin: caDSR - Value: Developer - Diabetes Mellitus: - Code: '3292684' - Definition: A metabolic disorder characterized by abnormally high blood sugar - levels due to diminished production of insulin or insulin resistance/desensitization. - Handle: Diabetes Mellitus - Origin: caDSR - Value: Diabetes Mellitus - Diagnostic Imaging: - Code: '3234169' - Definition: Any method that uses a visual display of structural or functional - patterns of organs or tissues for diagnostic evaluation. - Handle: Diagnostic Imaging - Origin: caDSR - Value: Diagnostic Imaging - Dilation and Curettage: - Code: '3528551' - Definition: A surgical scraping and removal of the inner lining of the uterus - through direct dilation of the uterine cervix. - Handle: Dilation and Curettage - Origin: caDSR - Value: Dilation and Curettage - Disseminated intravascular coagulation (DIC): - Code: '2769008' - Definition: Disseminated intravascular coagulation (DIC) is a pathological - process in the body where the blood starts to coagulate throughout the - whole body. This depletes the body of its platelets and coagulation factors, - and there is an increased the risk of hemorrhage. There are a variety - of causes of DIC, all usually causing the release of chemicals into the - blood that instigates the coagulation. (from Wikipedia) - Handle: Disseminated intravascular coagulation (DIC) - Origin: caDSR - Value: Disseminated intravascular coagulation (DIC) - Distant: - Code: '5627051' - Definition: A biological process that involves the transfer and growth of - cancer cells from the site of the primary tumor. Relocation of malignant - cells during metastasis can be restricted to movement within a specific - tissue/organ or may entail migration to a distal locus within the body. - This phenotype is a characteristic of all malignant tumors. - Handle: Distant - Origin: caDSR - Value: Distant - Distant Metastasis: - Code: '5627051' - Definition: A biological process that involves the transfer and growth of - cancer cells from the site of the primary tumor. Relocation of malignant - cells during metastasis can be restricted to movement within a specific - tissue/organ or may entail migration to a distal locus within the body. - This phenotype is a characteristic of all malignant tumors. - Handle: Distant Metastasis - Origin: caDSR - Value: Distant Metastasis - Division Head: - Code: '2578767' - Definition: The official that is responsible for the administrative, research - and medical activities within a clinical program, or subdivision of organization - such as a hospital. A division head is responsible for the overall direction - in the conduct of research; provision and coordination of training and - education; operations, staffing, and maintenance of the facilities. - Handle: Division Head - Origin: caDSR - Value: Division Head - Don't know: - Code: '3361449' - Definition: The answer is not known by the person answering. - Handle: Don't know - Origin: caDSR - Value: Don't know - Dr.: - Code: '2565675' - Definition: A courtesy title for a person who has received a doctorate degree - or who practices medicine. - Handle: Dr. - Origin: caDSR - Value: Dr. - DrPH: - Code: '2713761' - Definition: Doctor of Public Health is an academic degree in public health. - The prior degree is generally earned in the closely related professional - field, e.g. medicine. - Handle: DrPH - Origin: caDSR - Value: DrPH - Drug Company Contact: - Code: '2578768' - Definition: A person who acts as a channel for communication with a commercial - enterprise which produces substances intended for use in the diagnosis, - cure, mitigation, treatment, or prevention of disease. - Handle: Drug Company Contact - Origin: caDSR - Value: Drug Company Contact - Drug Related: - Code: '2760851' - Definition: An adverse effect of a drug used therapeutically or diagnostically. - Handle: Drug Related - Origin: caDSR - Value: Drug Related - EC: - Code: '2566518' - Definition: A procedure that uses ultrasonic waves directed over the chest - wall to obtain a graphic record of the heart's position, motion of the - walls, or internal parts such as the valves. - Handle: EC - Origin: caDSR - Value: EC - ECG: - Code: '12060150' - Definition: A procedure that displays the electrical activity of the heart. - Handle: ECG - Origin: caDSR - Value: ECG - EEG: - Code: '6401745' - Definition: The neurophysiologic exploration of the electrical activity of - the brain by the application of electrodes to the scalp. The resulting - traces are known as an electroencephalogram (EEG). This test is used to - assess brain damage, epilepsy and other problems. - Handle: EEG - Origin: caDSR - Value: EEG - EMG: - Code: '4821875' - Definition: An assessment of skeletal muscle function and nerve control, obtained - by recording and studying the intrinsic electrical properties of the muscles. - Handle: EMG - Origin: caDSR - Value: EMG - ENABLE Coach: - Code: '13966064' - Definition: A telehealth approach for palliative care targeted to rural patients - with advanced cancer or other serious illnesses and their family caregivers._Someone - who teaches a special skill (e.g., how to implement a treatment or intervention). - Handle: ENABLE Coach - Origin: caDSR - Value: ENABLE Coach - EOG: - Code: '12057566' - Definition: An electrophysiologic test that measures the standing potential - between the cornea and Bruch's membrane. Primary applications are in ophthalmological - diagnosis and in recording eye movements. - Handle: EOG - Origin: caDSR - Value: EOG - EPS: - Code: '2582147' - Definition: A cardiac procedure performed under fluoroscopy to determine the - area of the heart that is the source of aberrant electrical impulses that - give rise to arrhythmias. Aberrant pathways can be terminated by ablation. - Handle: EPS - Origin: caDSR - Value: EPS - ES: - Code: '2558723' - Definition: (en-DAHS-ko-pee) The use of a thin, lighted tube (called an endoscope) - to examine the inside of the body. - Handle: ES - Origin: caDSR - Value: ES - EdD: - Code: '2713398' - Definition: A professional doctorate that prepares the student for academic, - administrative or specialized positions in education. - Handle: EdD - Origin: caDSR - Value: EdD - Employee: - Code: '2573699' - Definition: A person working for another person or a business firm on a full- - or part-time basis and who receives payment for this work. - Handle: Employee - Origin: caDSR - Value: Employee - End-stage Renal Disease: - Code: '4395774' - Definition: Long-standing and persistent renal disease with glomerular filtration - rate (GFR) less than 15 ml/min. - Handle: End-stage Renal Disease - Origin: caDSR - Value: End-stage Renal Disease - Enucleation: - Code: '2577243' - Definition: A surgical procedure by which tissue or an organ (usually containing - a tumor) is removed without rupture from a specific anatomic site. - Handle: Enucleation - Origin: caDSR - Value: Enucleation - Evaluator: - Code: '2576284' - Definition: A person who determines the significance, worth, or condition - of something by careful appraisal and study. - Handle: Evaluator - Origin: caDSR - Value: Evaluator - Excisional Biopsy: - Code: '2576316' - Definition: A surgical procedure in which an entire lesion is removed for - microscopic examination. - Handle: Excisional Biopsy - Origin: caDSR - Value: Excisional Biopsy - External Beam Radiation Therapy: - Code: '4947832' - Definition: A type of radiation therapy that uses a machine to aim high-energy - rays at the cancer from outside of the body. - Handle: External Beam Radiation Therapy - Origin: caDSR - Value: External Beam Radiation Therapy - FA: - Code: '2582159' - Definition: A diagnostic procedure that uses the fluorescence of fluorescein - dye to examine the blood flow in the choroid and retina. - Handle: FA - Origin: caDSR - Value: FA - FASTA: - Code: '11422064' - Definition: A sequence in FASTA format consists of a single-line description, - followed by lines of sequence data. The first character of the description - line is a greater-than (">") symbol in the first column. Sequences are - represented in the standard IUB/IUPAC single letter amino acid and nucleic - acid codes, with a single hyphen or dash being used to represent a gap - of indeterminate length; in amino acid sequences asterix ("*") can represent - a translation stop. - Handle: FASTA - Origin: caDSR - Value: FASTA - FASTQ: - Code: '11422065' - Definition: A a tab-delimited containing information about an investigation, - including its name, a description, the investigator's contact details, - bibliographic references, and free text descriptions of any relevant protocols. - Handle: FASTQ - Origin: caDSR - Value: FASTQ - FID: - Code: '12057567' - Definition: A medical device placed on or inserted in an anatomic site for - accurate visualization of a particular area, prior to radiation treatment - or surgery. Examples include markers inserted in the prostate gland for - visualization of the site affected by cancer, prior to radiation therapy; - markers taped to the scalp prior to imaging in frameless stereotactic - brain surgery; and femoral and tibial pins used for spatial orientation - in total knee replacement. - Handle: FID - Origin: caDSR - Value: FID - FS: - Code: '2582162' - Definition: A technique used to examine of the back (fundus) and other anatomical - structures of the eye with a magnifying instrument. - Handle: FS - Origin: caDSR - Value: FS - Failure to Thrive: - Code: '3854253' - Definition: A clinical finding indicating less than normal growth in an infant - or child, or a state of global decline in an adult. - Handle: Failure to Thrive - Origin: caDSR - Value: Failure to Thrive - Female: - Code: '2567172' - Definition: A person who belongs to the sex that normally produces ova. The - term is used to indicate biological sex distinctions, or cultural gender - role distinctions, or both. - Handle: Female - Origin: caDSR - Value: Female - Fine Needle Aspiration: - Code: '3252620' - Definition: The removal of tissue or fluid with a thin needle for examination - under a microscope. - Handle: Fine Needle Aspiration - Origin: caDSR - Value: Fine Needle Aspiration - Fr.: - Code: '2565678' - Definition: Father; a male parent. - Handle: Fr. - Origin: caDSR - Value: Fr. - Funded Principal Investigator: - Code: '2593461' - Definition: "The investigator named on the award document. This investigator - has full and ultimate responsibility\r\nfor all research conducted under - the award." - Handle: Funded Principal Investigator - Origin: caDSR - Value: Funded Principal Investigator - Fungal infection: - Code: '2769007' - Definition: An infection caused by eukaryotic heterotrophic organisms that - live as saprobes or parasites, including mushrooms, yeasts, smuts, molds, - etc. They reproduce either sexually or asexually, and have life cycles - that range from simple to complex. Filamentous fungi refer to those that - grow as multicellular colonies (mushrooms and molds). - Handle: Fungal infection - Origin: caDSR - Value: Fungal infection - G1: - Code: '10987208' - Definition: Describes tumor cells that generally retain the appearance of - normal cells and tend to grow and spread at a slower rate than undifferentiated - or poorly differentiated tumor cells. - Handle: G1 - Origin: caDSR - Value: G1 - G2: - Code: '4614616' - Definition: 'Describes tumor cells that have lost some of the appearance of - normal cells. They tend to grow and spread at a faster rate than well - differentiated tumor cells. ' - Handle: G2 - Origin: caDSR - Value: G2 - G3: - Code: '5424651' - Definition: Describes tumor cells that generally have lost most of the appearance - of normal cells. They tend to grow and spread. - Handle: G3 - Origin: caDSR - Value: G3 - G4: - Code: '5428031' - Definition: A term used to describe cells or tissues that do not have specialized - ("mature") structures or functions. Undifferentiated cancer cells often - grow and spread quickly. - Handle: G4 - Origin: caDSR - Value: G4 - GB: - Code: '6050322' - Definition: A morphologic qualifier indicating that a neoplasm is of borderline - malignancy. - Handle: GB - Origin: caDSR - Value: GB - GCT/Res Format: - Code: '11422066' - Definition: A tab-delimited text file that contains gene expression data as - a column for each sample, a row for each gene, and an expression value - for each gene in each sample. RES differs from GCT by having labels for - each gene's absent (A) versus present (P) calls as generated by Affymetrix's - GeneChip software. - Handle: GCT/Res Format - Origin: caDSR - Value: GCT/Res Format - GFF3: - Code: '11422130' - Definition: A tab-separated format for sequence data. It uses one line per - feature, each containing 9 columns of data, plus optional track definition - lines. - Handle: GFF3 - Origin: caDSR - Value: GFF3 - GM: - Code: '2582141' - Definition: The use of various technologies to resolve the structure or features - of objects too small or fine to naturally be seen by eye. - Handle: GM - Origin: caDSR - Value: GM - GPR: - Code: '11422131' - Definition: A tab-delimited text file format developed by Axon Instruments - and used to export data from the microarray image analysis tool GenePix. - Handle: GPR - Origin: caDSR - Value: GPR - GTF: - Code: '11422132' - Definition: A tab-delimited text format based on the general feature format - (GFF) but which also contains some additional information for each gene. - Handle: GTF - Origin: caDSR - Value: GTF - GX: - Code: '10987209' - Definition: A morphologic qualifier indicating that the grade of a neoplasm - cannot be assessed. - Handle: GX - Origin: caDSR - Value: GX - GZIP Format: - Code: '2929849' - Definition: A file format consisting of a 10-byte header containing a magic - number, a version number, and a timestamp, a Deflate-compressed body, - and an 8-byte footer containing a checksum and the length of the original - uncompressed data. - Handle: GZIP Format - Origin: caDSR - Value: GZIP Format - Gastroenterologist: - Code: '2833542' - Definition: (GAS-tro-en-ter-AHL-o-jist) A doctor who specializes in diagnosing - and treating disorders of the digestive system. - Handle: Gastroenterologist - Origin: caDSR - Value: Gastroenterologist - Gastrointestinal (GI) failure (not liver): - Code: '2769005' - Definition: '(GAS-tro-in-TES-tih-nul) GI. Refers to the stomach and intestines.: - loss of ability to function normally.' - Handle: Gastrointestinal (GI) failure (not liver) - Origin: caDSR - Value: Gastrointestinal (GI) failure (not liver) - Gastrointestinal hemorrhage: - Code: '2769006' - Definition: '(GAS-tro-in-TES-tih-nul) GI. Refers to the stomach and intestines.: - Bleeding or escape of blood from a vessel.' - Handle: Gastrointestinal hemorrhage - Origin: caDSR - Value: Gastrointestinal hemorrhage - GenBank Format: - Code: '11422129' - Definition: A type of flat file format that allows for the storage of DNA - or protein sequences and annotations. It consists of an annotation section - and a sequence section. - Handle: GenBank Format - Origin: caDSR - Value: GenBank Format - Graft Versus Host Disease: - Code: '2636869' - Definition: An incompatibility reaction (which may be fatal) in a subject - (host) of low immunological competence (deficient lymphoid tissue) who - has been the recipient of immunologically competent lymphoid tissue from - a donor who lacks at least one antigen possessed by the recipient host; - the reaction, or disease, is the result of action of the transplanted - cells against those host tissues that possess the antigen not possessed - by the donor. Seen most commonly following bone marrow transplantation, - acute disease is seen after 5-40 days and chronic disease weeks to months - after transplantation, affecting, principally, the gastrointestinal tract, - liver, and skin. - Handle: Graft Versus Host Disease - Origin: caDSR - Value: Graft Versus Host Disease - Graft rejection or failure: - Code: '2779293' - Definition: Failure of transplanted tissue to become functional or operational, - often as a result of destruction by the host's immune system. - Handle: Graft rejection or failure - Origin: caDSR - Value: Graft rejection or failure - Grant Investigator: - Code: '2573709' - Definition: An individual designated by the grantee to take part in the conduction - of the study or to participate in a scientific activity being supported - by the grant. - Handle: Grant Investigator - Origin: caDSR - Value: Grant Investigator - Grant Principal Investigator: - Code: '2578772' - Definition: An individual designated by the grantee to direct the project - or activity being supported by the grant. He or she is responsible for - the scientific, legal, administrative, and technical aspects of the grant - and accountable to the grantee for the proper conduct of the project or - activity. The Principle Investigator (PI) must have a formal written appointment - with the applicant organization, which must be in the form of an official - relationship between the parties, but need not involve a salary or other - form of remuneration. The PI is a member of the grantee team responsible - for ensuring compliance with the financial and administrative aspects - of the award and with organizational as well as Federal requirements. - Handle: Grant Principal Investigator - Origin: caDSR - Value: Grant Principal Investigator - Grant Specialist: - Code: '2573715' - Definition: Grant Specialist - Handle: Grant Specialist - Origin: caDSR - Value: Grant Specialist - Group Coordinator: - Code: '2578769' - Definition: A person that is responsible for the integration and interaction - of work or events from an assembly of different people with diverse interests - and operations. - Handle: Group Coordinator - Origin: caDSR - Value: Group Coordinator - Guardian: - Code: '2578770' - Definition: An individual who is authorized under applicable State or local - law to consent on behalf of a child or incapable person to general medical - care including participation in clinical research. - Handle: Guardian - Origin: caDSR - Value: Guardian - HC: - Code: '2565699' - Definition: A physical, printed version of information from a computer. - Handle: HC - Origin: caDSR - Value: HC - HD: - Code: '2582148' - Definition: The analysis of hemodynamic pressure changes to obtain diagnostic - information about the function of the right and left ventricles during - systole and diastole. - Handle: HD - Origin: caDSR - Value: HD - HDF5: - Code: '11422133' - Definition: A hierarchical, filesystem-like data format that can store metadata - in the form of user-defined, named attributes, which are attached to groups - and datasets, and representations of images and tables built up using - datasets, groups and attributes. - Handle: HDF5 - Origin: caDSR - Value: HDF5 - HGNC (By Reference): - Code: '12126009' - Definition: The worldwide authority that assigns standardized nomenclature - to human genes. The HUGO Gene Nomenclature Committee is responsible for - approving unique symbols and names for human loci, including protein coding - genes, ncRNA genes, and pseudogenes, to allow unambiguous scientific communication. - It is jointly funded by the US National Human Genome Research Institute - (NHGRI) and Wellcome (UK) and operates under the auspices of the Human - Genome Organization (HUGO). - Handle: HGNC (By Reference) - Origin: caDSR - Value: HGNC (By Reference) - HIC: - Code: '14728934' - Definition: An indexed binary format designed to permit fast random access - to contact matrix heatmaps. - Handle: HIC - Origin: caDSR - Value: HIC - HIV/AIDS: - Code: '3838716' - Definition: 'Human immunodeficiency virus. Species of LENTIVIRUS, subgenus - primate lentiviruses (LENTIVIRUSES, PRIMATE), formerly designated T-cell - lymphotropic virus type III/lymphadenopathy-associated virus (HTLV-III/LAV). - It is acknowledged to be the agent responsible for the acute infectious - manifestations, neurologic disorders, and immunologic abnormalities linked - to the ACQUIRED IMMUNODEFICIENCY SYNDROME.: Used to indicate that either - or both of two items or options may be valid.: A syndrome resulting from - the acquired deficiency of cellular immunity caused by the human immunodeficiency - virus (HIV). It is characterized by the reduction of the Helper T-lymphocytes - in the peripheral blood and the lymph nodes; opportunistic infections - (usually pneumocystis carinii pneumonia, cytomegalovirus (CMV) infections, - tuberculosis, candida infections, and cryptococcosis); and the development - of malignant neoplasms (usually non-Hodgkin''s lymphoma and Kaposi''s - sarcoma). The human immunodeficiency virus is transmitted through sexual - contact, sharing of contaminated needles, or transfusion of contaminated - blood. Generalized lymphadenopathy, fever, weight loss, and chronic diarrhea - are common symptoms of AIDS. The patients usually die either of opportunistic - infections or malignant neoplasms. -- 2004' - Handle: HIV/AIDS - Origin: caDSR - Value: HIV/AIDS - HTML: - Code: '11422134' - Definition: A standard markup language used to display content on a web page, - as specified by the World Wide Web Consortium (W3C). - Handle: HTML - Origin: caDSR - Value: HTML - Head of Division: - Code: '2573703' - Definition: Head of Division - Handle: Head of Division - Origin: caDSR - Value: Head of Division - Health Care Provider: - Code: '2578773' - Definition: Persons who provides health care as part of their job responsibilities, - or a person or organization who is licensed to supply health care. - Handle: Health Care Provider - Origin: caDSR - Value: Health Care Provider - Hemorrhage: - Code: '4395748' - Definition: Bleeding or escape of blood from a vessel. - Handle: Hemorrhage - Origin: caDSR - Value: Hemorrhage - Hemorrhage, not otherwise specified: - Code: '2769002' - Definition: 'Bleeding or escape of blood from a vessel.: Not characterized - in any other way.' - Handle: Hemorrhage, not otherwise specified - Origin: caDSR - Value: Hemorrhage, not otherwise specified - Hemorrhagic cystitis: - Code: '2769003' - Definition: 'Bleeding or escape of blood from a vessel.: Inflammation of the - urinary bladder. (Dorland, 27th ed)' - Handle: Hemorrhagic cystitis - Origin: caDSR - Value: Hemorrhagic cystitis - Hepatitis: - Code: '3257061' - Definition: Inflammation of the liver; usually from a viral infection, but - sometimes from toxic agents. - Handle: Hepatitis - Origin: caDSR - Value: Hepatitis - Herpes: - Code: '3837928' - Definition: Any inflammatory skin disease caused by a herpesvirus and characterized - by the formation of small vesicles in clusters. - Handle: Herpes - Origin: caDSR - Value: Herpes - High Grade: - Code: '3288211' - Definition: Used to describe tumor samples that exhibit poorly differentiated - or undifferentiated cells. They are generally expected to be fast growing - and aggressive. - Handle: High Grade - Origin: caDSR - Value: High Grade - High-Dose Rate Brachytherapy: - Code: '2584511' - Definition: Internal radiation treatment that targets a cancerous tissue with - accurate, high doses of radiation through the use of inserted temporary - implants. - Handle: High-Dose Rate Brachytherapy - Origin: caDSR - Value: High-Dose Rate Brachytherapy - Hispanic or Latino: - Code: '2581176' - Definition: A person of Cuban, Mexican, Puerto Rican, South or Central American, - or other Spanish culture or origin, regardless of race. The term, "Spanish - origin," can be used in addition to "Hispanic or Latino." (OMB) - Handle: Hispanic or Latino - Origin: caDSR - Value: Hispanic or Latino - Histopathology: - Code: '2574778' - Definition: The microscopic study of characteristic tissue abnormalities by - employing various cytochemical and immunocytochemical stains. -- 2004 - Handle: Histopathology - Origin: caDSR - Value: Histopathology - Hormone Therapy: - Code: '4340414' - Definition: Various treatment modalities that produce the desired therapeutic - effect by means of change of hormone/hormones level. The treatment may - include administration of hormones or hormone analogs to the patient, - or decreasing the level of hormones in the body by using hormone antagonists, - or hormone ablation therapy. - Handle: Hormone Therapy - Origin: caDSR - Value: Hormone Therapy - I: - Code: '2578677' - Definition: Preceding all others in time or space or degree. - Handle: I - Origin: caDSR - Value: I - ICD-10-CM (By Reference): - Code: '6356782' - Definition: An extension of the ICD-10 created by the U.S. National Center - for Health Statistics so that the system could be used to capture more - morbidity data. This extension included a section of procedure codes. - Handle: ICD-10-CM (By Reference) - Origin: caDSR - Value: ICD-10-CM (By Reference) - ICD-O-3 (By Reference): - Code: '12126010' - Definition: The third edition of the International Classification of Diseases - for Oncology, published in 2000, used principally in tumor and cancer - registries for coding the site (topography) and the histology (morphology) - of neoplasms. - Handle: ICD-O-3 (By Reference) - Origin: caDSR - Value: ICD-O-3 (By Reference) - IDAT: - Code: '11495707' - Definition: A proprietary, encrypted XML-based, compressed electronic file - format from Illumina Inc. for storing genome-wide profiling data. The - data contains a summary of the intensity data generated from each probe - used during a sequencing run. - Handle: IDAT - Origin: caDSR - Value: IDAT - IDF: - Code: '11422065' - Definition: A a tab-delimited containing information about an investigation, - including its name, a description, the investigator's contact details, - bibliographic references, and free text descriptions of any relevant protocols. - Handle: IDF - Origin: caDSR - Value: IDF - II: - Code: '2577175' - Definition: A suffix denoting the second person having the same complete name - (first, middle, and family names). - Handle: II - Origin: caDSR - Value: II - III: - Code: '2577176' - Definition: A suffix denoting the third person having the same complete name - (first, middle, and family names). - Handle: III - Origin: caDSR - Value: III - IO: - Code: '2582139' - Definition: Radiography done within the oral cavity. - Handle: IO - Origin: caDSR - Value: IO - IOL: - Code: '12057568' - Definition: Calculations made to determine the required optical power for - an intra-ocular lens that will be implanted following cataract surgery. - Its strength is a factor of corneal refractive power, ocular media type, - and axial length. - Handle: IOL - Origin: caDSR - Value: IOL - IPS, idiopathic: - Code: '2774525' - Definition: 'An inflammatory lung disease characterized by diffuse interstitial - pneumonitis and alveolitis leading to interstitial fibrosis in the absence - of an identifiable infectious agent.: Describes a disease of unknown cause.' - Handle: IPS, idiopathic - Origin: caDSR - Value: IPS, idiopathic - IPS, viral, cytomegalovirus(CMV): - Code: '2768977' - Definition: 'An inflammatory lung disease characterized by diffuse interstitial - pneumonitis and alveolitis leading to interstitial fibrosis in the absence - of an identifiable infectious agent.: Having to do with a virus.: A genus - of the family herpesviridae, subfamily betaherpesvirinae, infecting the - salivary glands, liver, spleen, lungs, eyes, and other organs, in which - they produce characteristically enlarged cells with intranuclear inclusions.' - Handle: IPS, viral, cytomegalovirus(CMV) - Origin: caDSR - Value: IPS, viral, cytomegalovirus(CMV) - IPS, viral, other: - Code: '2768975' - Definition: 'An inflammatory lung disease characterized by diffuse interstitial - pneumonitis and alveolitis leading to interstitial fibrosis in the absence - of an identifiable infectious agent.: Having to do with a virus.: Not - otherwise specified.' - Handle: IPS, viral, other - Origin: caDSR - Value: IPS, viral, other - IV: - Code: '2577177' - Definition: A suffix denoting the fourth person having the same complete name - (first, middle, and family names). - Handle: IV - Origin: caDSR - Value: IV - IVOCT: - Code: '12057569' - Definition: Optical coherence tomography used for imaging within blood vessels. - Handle: IVOCT - Origin: caDSR - Value: IVOCT - IVUS: - Code: '2582150' - Definition: An invasive procedure in which sound waves (called ultrasound) - are bounced off of vascular tissues from within the vessel and the echoes - produce a picture (sonogram). - Handle: IVUS - Origin: caDSR - Value: IVUS - Imaging Technique: - Code: '5283972' - Definition: Any technology or method that aids in the visualization of any - biological process, cell, tissue or organ for use in screening, diagnosis, - surgical procedures or therapy. - Handle: Imaging Technique - Origin: caDSR - Value: Imaging Technique - Immunotherapy: - Code: '5102332' - Definition: Therapy designed to induce changes in a patient's immune status - in order to treat disease. - Handle: Immunotherapy - Origin: caDSR - Value: Immunotherapy - Immunotherapy-Related: - Code: '13204084' - Definition: An observation that a situation is related to immunotherapy received. - Handle: Immunotherapy-Related - Origin: caDSR - Value: Immunotherapy-Related - Incisional Biopsy: - Code: '2757939' - Definition: A surgical procedure in which part of a lesion is removed for - microscopic examination. - Handle: Incisional Biopsy - Origin: caDSR - Value: Incisional Biopsy - Infection: - Code: '3604289' - Definition: A disorder resulting from the presence and activity of a microbial, - viral, or parasitic agent. It can be transmitted by direct or indirect - contact. - Handle: Infection - Origin: caDSR - Value: Infection - Infection, NOS: - Code: '13347071' - Definition: The invasion of an organism's body tissues by disease-causing - agents and their multiplication, as well as the reaction by the host to - these organisms and/or toxins that the organisms produce._Not characterized - in any other way. - Handle: Infection, NOS - Origin: caDSR - Value: Infection, NOS - Infection, organism not identified: - Code: '2768993' - Definition: 'A disorder resulting from the presence and activity of a microbial, - viral, fungal, or parasitic agent. It can be transmitted by direct or - indirect contact.: A living thing, such as an animal, a plant, a bacterium, - or a fungus.: The finding is not present, but a value of ''none'' cannot - be unequivocally established absence in the current context.' - Handle: Infection, organism not identified - Origin: caDSR - Value: Infection, organism not identified - Influenza: - Code: '3604288' - Definition: An acute viral infection of the respiratory tract, occurring in - isolated cases, in epidemics, or in pandemics; it is caused by serologically - different strains of viruses (influenzaviruses) designated A, B, and C, - has a 3-day incubation period, and usually lasts for 3 to 10 days. It - is marked by inflammation of the nasal mucosa, pharynx, and conjunctiva; - headache; myalgia; often fever, chills, and prostration; and occasionally - involvement of the myocardium or central nervous system. - Handle: Influenza - Origin: caDSR - Value: Influenza - Infusion Nurse: - Code: '2918941' - Definition: 'A method of putting fluids, including drugs, into the bloodstream. - Also called intravenous infusion.: A health professional trained to care - for people who are ill or disabled.' - Handle: Infusion Nurse - Origin: caDSR - Value: Infusion Nurse - Intensity-Modulated Radiation Therapy: - Code: '3991473' - Definition: An advanced form of 3-Dimensional Conformal Radiation Therapy - Handle: Intensity-Modulated Radiation Therapy - Origin: caDSR - Value: Intensity-Modulated Radiation Therapy - Intermediate Grade: - Code: '3335158' - Definition: "A term referring to the degree of differentiation of a malignant - neoplasm and indicating that it is moderately differentiated.\r\n" - Handle: Intermediate Grade - Origin: caDSR - Value: Intermediate Grade - Interpreter: - Code: '2576593' - Definition: Someone who mediates between speakers of different languages. - Handle: Interpreter - Origin: caDSR - Value: Interpreter - Intersex: - Code: '2575558' - Definition: A person (one of unisexual specimens) who is born with genitalia - and/or secondary sexual characteristics of indeterminate sex, or which - combine features of both sexes. - Handle: Intersex - Origin: caDSR - Value: Intersex - Interstitial Pneumonia (IP) NOS: - Code: '3854251' - Definition: "Not characterized in any other way.: Inflammation of interstitial - lung tissue, usually associated with infection.\r\n" - Handle: Interstitial Pneumonia (IP) NOS - Origin: caDSR - Value: Interstitial Pneumonia (IP) NOS - Interventional Radiologist: - Code: '6156304' - Definition: A radiologist that specializes in the use of minimally invasive - image-guided procedures for the diagnosis and treatment of disease. - Handle: Interventional Radiologist - Origin: caDSR - Value: Interventional Radiologist - Interviewer: - Code: '2576595' - Definition: The person who manages an interview and asks the questions. - Handle: Interviewer - Origin: caDSR - Value: Interviewer - Intracranial hemorrhage: - Code: '2768998' - Definition: Bleeding within the cranium. - Handle: Intracranial hemorrhage - Origin: caDSR - Value: Intracranial hemorrhage - Investigator: - Code: '2569282' - Definition: a researcher in a clinical trial or clinical study. - Handle: Investigator - Origin: caDSR - Value: Investigator - JD: - Code: '2713436' - Definition: A professional doctorate typically awarded by an accredited U.S. - law school after successfully completing three years of post-graduate - law study. Generally, a 4-year undergraduate degree is required to be - eligible for entry into a JD program. - Handle: JD - Origin: caDSR - Value: JD - JPEG: - Code: '11422138' - Definition: A file compression format mostly used for color and greyscale - photographs. - Handle: JPEG - Origin: caDSR - Value: JPEG - JPEG 2000: - Code: '11422135' - Definition: A discrete wavelet transform (DWT)-based compression standard - electronic file format for storing video images. - Handle: JPEG 2000 - Origin: caDSR - Value: JPEG 2000 - JSON: - Code: '11422136' - Definition: A common open standard file format and data interchange format - that uses human-readable text consisting of attribute-value pairs and - arrays to store and transmit data. - Handle: JSON - Origin: caDSR - Value: JSON - Jr.: - Code: '2577069' - Definition: A suffix used to distinguish a son from his father when they have - the same given name. - Handle: Jr. - Origin: caDSR - Value: Jr. - KER: - Code: '12057570' - Definition: The measurement of the curvature of the anterior corneal surface. - Handle: KER - Origin: caDSR - Value: KER - KO: - Code: '2582153' - Definition: Selection of a key image by the interpreting physician. - Handle: KO - Origin: caDSR - Value: KO - LEN: - Code: '12057571' - Definition: The use of a lensometer to determine the optical strength of eye - glass lenses. - Handle: LEN - Origin: caDSR - Value: LEN - LLM: - Code: '2713435' - Definition: An advanced law degree generally earned in a course of specialized - study in law. - Handle: LLM - Origin: caDSR - Value: LLM - LP: - Code: '2559024' - Definition: (lap-a-RAHS-ko-pee) The insertion of a thin, lighted tube (called - a laparoscope) through the abdominal wall to inspect the inside of the - abdomen and remove tissue samples. - Handle: LP - Origin: caDSR - Value: LP - LS: - Code: '2582125' - Definition: A method for obtaining information about the surface morphology - and topology of an object. - Handle: LS - Origin: caDSR - Value: LS - Laboratory Director: - Code: '2578771' - Definition: A person who plans, organizes, coordinates and oversees the overall - operation of laboratory activities. The laboratory director establishes - policies and procedures that govern the utilization of community laboratory - services, and ensures that the laboratory and support personnel receive - the appropriate training associated with the work involved. - Handle: Laboratory Director - Origin: caDSR - Value: Laboratory Director - Laboratory Technologist: - Code: '2576286' - Definition: A technically trained person who performs laboratory activities - and provides laboratory analysis according to laboratory policies, procedures - and protocols. - Handle: Laboratory Technologist - Origin: caDSR - Value: Laboratory Technologist - Laparoscopy: - Code: '3859297' - Definition: Laparoscopic examination of the abdominal cavity and its contents. - Handle: Laparoscopy - Origin: caDSR - Value: Laparoscopy - Laparotomy: - Code: '3131259' - Definition: Creation of a surgical opening into the abdominal cavity. - Handle: Laparotomy - Origin: caDSR - Value: Laparotomy - Lead Drug Monitor: - Code: '2578779' - Definition: The primary individual who over a period of time checks on and - maintains continuous observation of state, condition, situation, or process - relating to substances intended for use in diagnosis, cure, mitigation, - treatment, or prevention of disease as a check on output, efficiency, - conduct, etc. and warns of faults, or gives advice and instruction by - way of reporting or caution. - Handle: Lead Drug Monitor - Origin: caDSR - Value: Lead Drug Monitor - Legal Representative of the Sponsor: - Code: '2578780' - Definition: An individual with expertise in the law who provides legal counsel - and representation to the individual, company, institution, or organization - taking responsibility for the initiation, management, and financing of - a study. - Handle: Legal Representative of the Sponsor - Origin: caDSR - Value: Legal Representative of the Sponsor - Letter of Intent Review Chair: - Code: '2578781' - Definition: A person who presides over a review committee or panel, which - evaluates letters of intent (LOI) for clinical trials. - Handle: Letter of Intent Review Chair - Origin: caDSR - Value: Letter of Intent Review Chair - Liver failure (not VOD): - Code: '2768996' - Definition: 'A large organ located in the upper abdomen. The liver cleanses - the blood and aids in digestion by secreting bile.: loss of ability to - function normally.' - Handle: Liver failure (not VOD) - Origin: caDSR - Value: Liver failure (not VOD) - Local: - Code: '3461432' - Definition: A disease that is confined to a specific organ or tissue and has - not spread to other anatomic sites. - Handle: Local - Origin: caDSR - Value: Local - Localized Disease: - Code: '3461432' - Definition: A disease that is confined to a specific organ or tissue and has - not spread to other anatomic sites. - Handle: Localized Disease - Origin: caDSR - Value: Localized Disease - Locoregional: - Code: '14880672' - Definition: A disease that occurs within a specific organ or tissue and extends - into adjacent areas including lymph nodes. - Handle: Locoregional - Origin: caDSR - Value: Locoregional - Low Grade: - Code: '3288210' - Definition: Used to describe tumor samples that exhibit well to moderately - well differentiated cells. They are generally expected to be slow growing - and less aggressive. - Handle: Low Grade - Origin: caDSR - Value: Low Grade - Low-Dose Rate Brachytherapy: - Code: '3028886' - Definition: Internal radiation treatment that targets a cancerous tissue with - low doses of radiation through the use of inserted temporary or permanent - implants. - Handle: Low-Dose Rate Brachytherapy - Origin: caDSR - Value: Low-Dose Rate Brachytherapy - M3D: - Code: '12057573' - Definition: A structural template used as the basis for manufacturing three - dimensional objects. - Handle: M3D - Origin: caDSR - Value: M3D - MA: - Code: '2582163' - Definition: An image of blood vessels constructed using magnetic resonance - imaging. - Handle: MA - Origin: caDSR - Value: MA - MAF: - Code: '11422137' - Definition: A tab-delimited text file containing mutation information aggregated - from variant call files (VCF) across a project, trial or study. - Handle: MAF - Origin: caDSR - Value: MAF - MAGE-TAB: - Code: '2953599' - Definition: A tab-delimited, spreadsheet-based format that can be used for - annotating and communicating microarray data in a MIAME (Minimum Information - About a Microarray Experiment) compliant fashion. - Handle: MAGE-TAB - Origin: caDSR - Value: MAGE-TAB - MAT: - Code: '11422139' - Definition: A proprietary, binary data container format used by MATLAB software - to store workspace variables. - Handle: MAT - Origin: caDSR - Value: MAT - MATLAB Script: - Code: '11422140' - Definition: A file that contains MATLAB commands and function calls. - Handle: MATLAB Script - Origin: caDSR - Value: MATLAB Script - MBA: - Code: '2713760' - Definition: Master of Business Administration is a master's degree in business. - Handle: MBA - Origin: caDSR - Value: MBA - MCE: - Code: '2713433' - Definition: A postgraduate academic degree awarded after the completion of - a program of one to three years in duration. This acknowledgment comprises - about 4-6 years of university study in total with a professional engineering - discipline that deals with the construction and design of public and private - sector works such as bridges, roads, dams and buildings. - Handle: MCE - Origin: caDSR - Value: MCE - MD: - Code: '2573118' - Definition: 'The Doctor of Medicine degree is the first-professional postgraduate - degree that requires completion of a program that meets all of the following - criteria: completion of the academic requirements to begin practice in - the profession; at least 2 years of college work prior to entering the - program; and a total of at least 6 academic years of college work to complete - a program of studies in any branch of medical science, including prior - required college work plus the length of the professional program itself. - The academic standard is equivalent to Ph.D. science.' - Handle: MD - Origin: caDSR - Value: MD - MDI: - Code: '2713432' - Definition: A master's degree in religion. - Handle: MDI - Origin: caDSR - Value: MDI - ME: - Code: '2713429' - Definition: A master's degree in engineering awarded after the completion - of a program of one to three years in duration. This acknowledgment comprises - about 4-6 years of university study in total with a focus in the field - of engineering. - Handle: ME - Origin: caDSR - Value: ME - MEE: - Code: '2713427' - Definition: A master's degree in electrical engineering awarded after the - completion of a program of one to three years in duration. This acknowledgment - comprises about 4-6 years of university study in total with a focus on - an engineering discipline that deals with the study and/or application - of electricity, electronics and electromagnetism. - Handle: MEE - Origin: caDSR - Value: MEE - MEX: - Code: '14532371' - Definition: A minimal base ASCII file format to facilitate the exchange of - data matrices. - Handle: MEX - Origin: caDSR - Value: MEX - MEd: - Code: '2713428' - Definition: A master's degree in education awarded after the completion of - a program of one to three years in duration. This acknowledgment comprises - about 4-6 years of university study in total and is a degree conferred - by American and Canadian institutions for educators moving on in their - field. - Handle: MEd - Origin: caDSR - Value: MEd - MFA: - Code: '2713426' - Definition: A master's degree in an area of visual, literary or performing - arts typically requiring two to three years of study beyond the bachelor - level. Coursework is primarily of an applied or performing nature with - the program often culminating in a major work or performance. - Handle: MFA - Origin: caDSR - Value: MFA - MG: - Code: '2582138' - Definition: Imaging examination of the breast by means of x-rays. - Handle: MG - Origin: caDSR - Value: MG - MHSA: - Code: '2713759' - Definition: Master of Health Services Administration is a master's degree - in health administration and health care management. - Handle: MHSA - Origin: caDSR - Value: MHSA - MME: - Code: '2713425' - Definition: A master's degree in mechanical engineering awarded after the - completion of a program of one to three years in duration. This acknowledgment - comprises about 4-6 years of university study in total with the focus - on an engineering discipline that involves the application of principles - of physics for analysis, design, manufacturing, and maintenance of mechanical - systems. - Handle: MME - Origin: caDSR - Value: MME - MPA: - Code: '2713424' - Definition: A master's degree that focuses on public administration at the - local, state/provincial, national/federal and supranational levels, as - well as in the nonprofit sector. - Handle: MPA - Origin: caDSR - Value: MPA - MPEG-4: - Code: '11422141' - Definition: A multimedia file that is commonly used to store video and audio - data. - Handle: MPEG-4 - Origin: caDSR - Value: MPEG-4 - MPH: - Code: '2713758' - Definition: The Master's of Public Health is an academic degree awarded to - graduates who have completed a program of studies in public health that - usually address human population health, community program administration, - research, and health policy development. - Handle: MPH - Origin: caDSR - Value: MPH - MR: - Code: '2582120' - Definition: Imaging that uses radiofrequency waves and a strong magnetic field - rather than x-rays to provide detailed pictures of internal organs and - tissues. The technique is valuable for the diagnosis of many pathologic - conditions, including cancer, heart and vascular disease, stroke, and - joint and musculoskeletal disorders. - Handle: MR - Origin: caDSR - Value: MR - MS: - Code: '2576333' - Definition: Magnetic Resonance Spectroscopy - Handle: MS - Origin: caDSR - Value: MS - MSL: - Code: '2713423' - Definition: A postgraduate academic degree awarded after the completion of - a program of one to three years in duration. This acknowledgment comprises - about 4-6 years of university study in total with a focus on law. - Handle: MSL - Origin: caDSR - Value: MSL - MSN: - Code: '2713422' - Definition: An advanced-level quaternary education degree for Registered Nurses - focusing in one or more different advanced nursing specialties. It is - required to become an advanced practice nurse and is considered an entry-level - degree for nurse educators and managers. It is also a prerequisite for - doctorate-level nursing education. - Handle: MSN - Origin: caDSR - Value: MSN - MSW: - Code: '2713446' - Definition: An advanced academic degree in the field of social work which - is received from a graduate school that has been approved by the Council - on Social Work Education. The MSW requires two years of post graduate - study, in combination with one year's internship, also called field experience. - Handle: MSW - Origin: caDSR - Value: MSW - MT: - Code: '2713445' - Definition: An advanced academic degree which is sometimes earned after (or - instead of) a Master of Divinity or a Master of Theological Studies. This - degree can range from a one or two year degree (30-60 credit hours) in - general theological studies all the way up to a four year degree (120 - credit hours) which offers specialized advanced studies in theological - research. - Handle: MT - Origin: caDSR - Value: MT - Magnetic Resonance Imaging Study File: - Code: '5612304' - Definition: Imaging that uses radiofrequency waves and a strong magnetic field - rather than x-rays to provide amazingly clear and detailed pictures of - internal organs and tissues. The technique is valuable for the diagnosis - of many pathologic conditions, including cancer, heart and vascular disease, - stroke, and joint and musculoskeletal disorders. - Handle: Magnetic Resonance Imaging Study File - Origin: caDSR - Value: Magnetic Resonance Imaging Study File - Mail Contact: - Code: '2578784' - Definition: The person who is responsible for correspondence handled in a - postal system, such as letters and packages. - Handle: Mail Contact - Origin: caDSR - Value: Mail Contact - Mail Contact (Mgr): - Code: '2573697' - Definition: The person who is responsible for correspondence handled in a - postal system, such as letters and packages. - Handle: Mail Contact (Mgr) - Origin: caDSR - Value: Mail Contact (Mgr) - Mail to contact: - Code: '2573712' - Definition: A person to whom mail is to be sent. - Handle: Mail to contact - Origin: caDSR - Value: Mail to contact - Maintainer: - Code: '2638255' - Definition: A person or organization who performs all program coding after - initial deployment to correct coding errors, enhance the functionality - of the software, and perfect the functioning of the software. - Handle: Maintainer - Origin: caDSR - Value: Maintainer - Male: - Code: '2567171' - Definition: A person who belongs to the sex that normally produces sperm. - The term is used to indicate biological sex distinctions, cultural gender - role distinctions, or both. - Handle: Male - Origin: caDSR - Value: Male - Marijuana Smoke Exposure: - Code: '11167651' - Definition: Environmental, occupational or consumer-based exposure to airborne - gases and particulates produced by direct or nearby use of a vaporized - or combusted product made from the leaves and flowers of the cannabis - plant. - Handle: Marijuana Smoke Exposure - Origin: caDSR - Value: Marijuana Smoke Exposure - Medical Monitor: - Code: '2578782' - Definition: Person employed by the sponsor or clinical research organization, - who is responsible for determining that a clinical study is being conducted - in accordance with the protocol. A monitor's duties may include, but are - not limited to, helping to plan and initiate a trial, assessing the conduct - of trial, assisting in data analysis, interpretation, and extrapolation. - Monitor has medical authority for the checking data and documentation - from the trial and for the evaluation of its safety aspects. - Handle: Medical Monitor - Origin: caDSR - Value: Medical Monitor - Medical Oncologist: - Code: '2833457' - Definition: (on-KOL-o-jist) A doctor who specializes in diagnosing and treating - cancer using chemotherapy, hormonal therapy, and biological therapy. A - medical oncologist often is the main caretaker of someone who has cancer - and coordinates treatment provided by other specialists. - Handle: Medical Oncologist - Origin: caDSR - Value: Medical Oncologist - Medical Physicist: - Code: '2578800' - Definition: A healthcare professional or scientist with knowledge and competence - in health physics including but not limited to nuclear medicine, radiotherapy, - radiology and various aspects of physiological monitoring and investigation. - Handle: Medical Physicist - Origin: caDSR - Value: Medical Physicist - Miss: - Code: '2565677' - Definition: A courtesy title for an unmarried woman. - Handle: Miss - Origin: caDSR - Value: Miss - Mr.: - Code: '2567791' - Definition: A courtesy title for a man. - Handle: Mr. - Origin: caDSR - Value: Mr. - Mrs.: - Code: '2675062' - Definition: A courtesy title prefixed to the name of a married woman. - Handle: Mrs. - Origin: caDSR - Value: Mrs. - Ms.: - Code: '2567792' - Definition: A courtesy title used before the name of a woman without making - a distinction between married and unmarried status. - Handle: Ms. - Origin: caDSR - Value: Ms. - Multiple Organ Failure: - Code: '2768995' - Definition: A progressive condition usually characterized by combined failure - of the lungs, liver, kidney, and clotting mechanisms. - Handle: Multiple Organ Failure - Origin: caDSR - Value: Multiple Organ Failure - Myocardial infarction: - Code: '2569449' - Definition: Gross necrosis of the myocardium, as a result of interruption - of the blood supply to the area. (Dorland, 27th ed) - Handle: Myocardial infarction - Origin: caDSR - Value: Myocardial infarction - NCBI (By Reference): - Code: '14753627' - Definition: Established in 1988 as a national resource for molecular biology - information, NCBI creates public databases, conducts research in computational - biology, develops software tools for analyzing genome data, and disseminates - biomedical information - all for the better understanding of molecular - processes affecting human health and disease. - Handle: NCBI (By Reference) - Origin: caDSR - Value: NCBI (By Reference) - ND: - Code: '2713756' - Definition: The Naturopathic Doctor (N.D.) degree is a degree awarded for - graduates who have completed a medical doctoral program in accredited - school. N.D. has a qualification of primary care physicians with a specialized - focus in preventative medicine, natural therapeutics, and emphasis on - holistic and nontoxic approaches to therapy and optimizing wellness. - Handle: ND - Origin: caDSR - Value: ND - NIFTI Format: - Code: '11422144' - Definition: An open file format used to store neuroscience and neuroradiology - imaging data obtained by MRI. The raw image data in NIfTI is saved as - a 3d image. - Handle: NIFTI Format - Origin: caDSR - Value: NIFTI Format - NM: - Code: '12103506' - Definition: An imaging technique that uses a small dose of a radioactive chemical - (isotope) called a tracer that can detect sites of cancer growth, trauma, - infection or degenerative disorders. The tracer, which is either injected - into a vein or swallowed, travels through the bloodstream to the target - organ, and emits gamma rays, which are detected by a gamma camera and - analyzed by a computer to form an image of the target organ. - Handle: NM - Origin: caDSR - Value: NM - Native Hawaiian or other Pacific Islander: - Code: '2572235' - Definition: Denotes a person having origins in any of the original peoples - of Hawaii, Guam, Samoa, or other Pacific Islands. The term covers particularly - people who identify themselves as part-Hawaiian, Native Hawaiian, Guamanian - or Chamorro, Carolinian, Samoan, Chuukese (Trukese), Fijian, Kosraean, - Melanesian, Micronesian, Northern Mariana Islander, Palauan, Papua New - Guinean, Pohnpeian, Polynesian, Solomon Islander, Tahitian, Tokelauan, - Tongan, Yapese, or Pacific Islander, not specified. - Handle: Native Hawaiian or other Pacific Islander - Origin: caDSR - Value: Native Hawaiian or other Pacific Islander - Natural causes: - Code: '3837948' - Definition: 'A description for something that exists in or is produced by - nature, and is not artificial or man-made.: The circumstance or condition - that results in the death of a living being.' - Handle: Natural causes - Origin: caDSR - Value: Natural causes - Neuropathologist: - Code: '2576287' - Definition: A physician with specialized training and expertise in the diagnosis - of diseases of the brain and nervous system by microscopic evaluation - of the tissue. - Handle: Neuropathologist - Origin: caDSR - Value: Neuropathologist - New Tumor Event: - Code: '14473337' - Definition: The presence of a primary, recurrent or metastatic neoplasm which - has not been previously noted. - Handle: New Tumor Event - Origin: caDSR - Value: New Tumor Event - 'No': - Code: '5697866' - Definition: The non-affirmative response to a question. - Handle: 'No' - Origin: caDSR - Value: 'No' - Non-protocol cancer therapy: - Code: '3837947' - Definition: 'Treatment not specified in a protocol.: Any intervention for - management of a malignant neoplasm.' - Handle: Non-protocol cancer therapy - Origin: caDSR - Value: Non-protocol cancer therapy - None of these describe me: - Code: '7554789' - Definition: A response indicating that an individual feels that no option - listed is a good description for them. - Handle: None of these describe me - Origin: caDSR - Value: None of these describe me - Normal: - Code: '14741231' - Definition: Tissue sample with cellular composition and architectural patterns - expected for the particular anatomic site in which it belongs. There is - no evidence of abnormal cellular infiltrates or tumor mass formation. - Handle: Normal - Origin: caDSR - Value: Normal - Not Allowed To Collect: - Code: '6662191' - Definition: An indicator that specifies that a collection event was not permitted. - Handle: Not Allowed To Collect - Origin: caDSR - Value: Not Allowed To Collect - Not Applicable: - Code: '7590024' - Definition: Determination of a value is not relevant in the current context. - Handle: Not Applicable - Origin: caDSR - Value: Not Applicable - Not Cancer Related: - Code: '7642107' - Definition: A death attributed to any cause other than the progression of - a cancer-related pathologic condition. - Handle: Not Cancer Related - Origin: caDSR - Value: Not Cancer Related - Not Hispanic or Latino: - Code: '2567110' - Definition: A person not of Cuban, Mexican, Puerto Rican, South or Central - American, or other Spanish culture or origin, regardless of race. - Handle: Not Hispanic or Latino - Origin: caDSR - Value: Not Hispanic or Latino - Not Reported: - Code: '5612322' - Definition: Not provided or available. - Handle: Not Reported - Origin: caDSR - Value: Not Reported - Not allowed to collect: - Code: '6662191' - Definition: An indicator that specifies that a collection event was not permitted. - Handle: Not allowed to collect - Origin: caDSR - Value: Not allowed to collect - Not reported: - Code: '2572578' - Definition: Not provided or available. - Handle: Not reported - Origin: caDSR - Value: Not reported - Nurse: - Code: '2570501' - Definition: A health professional trained to care for people who are ill or - disabled. - Handle: Nurse - Origin: caDSR - Value: Nurse - Nurse Coach: - Code: '7607365' - Definition: A registered nurse with specialized training in peer and/or health - and wellness coaching that provides guidance and resources to patients, - colleagues, or institutions towards making positive changes and achieving - goals. - Handle: Nurse Coach - Origin: caDSR - Value: Nurse Coach - Nurse Practitioner: - Code: '2668461' - Definition: A registered nurse (RN) with advanced training in diagnosing and - treating illness. NPs are master's degree prepared health experts that - focus on helping patients achieve total health and prevent disease. NPs - focus on disease prevention, wellness, and patient education. NPs prescribe - medications, treat illness, and perform physical examinations. NPs can - function independently of physician intervention, but require a practice - agreement with a physician. - Handle: Nurse Practitioner - Origin: caDSR - Value: Nurse Practitioner - OAM: - Code: '12057574' - Definition: A method for determining the axial length of the eye. - Handle: OAM - Origin: caDSR - Value: OAM - OBIB (By Reference): - Code: '14428019' - Definition: An ontology designed for describing biobank specimens as well - as the information required for modeling the activities and administration - of a biobank. - Handle: OBIB (By Reference) - Origin: caDSR - Value: OBIB (By Reference) - OCT: - Code: '6413980' - Definition: Optical Coherence Tomography (OCT) combines the principles of - ultrasound with the imaging performance of a microscope. OCT uses infrared - light waves that reflect off the internal microstructure within the biological - tissues. The frequencies and bandwidths of infrared light are orders of - magnitude higher than medical ultrasound signals, resulting in greatly - increased image resolution, 8-25 times greater than any existing modality. - In addition to providing high-level resolutions for the evaluation of - microanatomic structures OCT is also able to provide information regarding - tissue composition. - Handle: OCT - Origin: caDSR - Value: OCT - OD: - Code: '2713755' - Definition: The Doctor of Optometry degree is the first-professional, postgraduate - degree awarded to the graduates who have completed a specialized four - year post-baccalaureate professional program in order to become independent - health care providers who examine, diagnose, treat, and manage disorders - of the visual systems and diseases of the eye and associated structures. - Handle: OD - Origin: caDSR - Value: OD - OME-TIFF: - Code: '11422196' - Definition: A tagged image file format (TIFF) image file format that contains - an Open Microscopy Environment (OME) XML metadata block in the file header - for storing microscopy information (pixels and metadata) using the OME - Data Model. - Handle: OME-TIFF - Origin: caDSR - Value: OME-TIFF - OP: - Code: '2582151' - Definition: Photography used to study and document structures and disorders - of the eye. - Handle: OP - Origin: caDSR - Value: OP - OPM: - Code: '12057575' - Definition: Methods for determining the topography or thickness of parts of - the eye. - Handle: OPM - Origin: caDSR - Value: OPM - OPT: - Code: '12057576' - Definition: The use of optical coherence tomography to obtain images of the - eye. - Handle: OPT - Origin: caDSR - Value: OPT - OPTBSV: - Code: '12057577' - Definition: An assessment of ocular anatomy as well as any lesions that may - be present within the eye that utilizes optical coherence tomography at - frequencies of 10 MHz or higher. - Handle: OPTBSV - Origin: caDSR - Value: OPTBSV - OPTENF: - Code: '12057578' - Definition: An imaging technique that combines spectral-domain optical coherence - tomography with transverse confocal analysis, producing transverse images - of retinal and choroidal layers at a specified depth. - Handle: OPTENF - Origin: caDSR - Value: OPTENF - OPV: - Code: '7463355' - Definition: An eye examination technique that utilizes test objects with gradually - increasing luminance that are positioned at fixed locations across the - visual field to determine the threshold of visibility. - Handle: OPV - Origin: caDSR - Value: OPV - OSS: - Code: '12057579' - Definition: A device designed for continuous and touchless optical surface - scanning of a patient's external surfaces for accurate patient positioning. - Handle: OSS - Origin: caDSR - Value: OSS - OT: - Code: '2559653' - Definition: Different than the one(s) previously specified or mentioned. - Handle: OT - Origin: caDSR - Value: OT - Oncology Nurse: - Code: '2833456' - Definition: A nurse who specializes in treating and caring for people who - have cancer. - Handle: Oncology Nurse - Origin: caDSR - Value: Oncology Nurse - Organ failure, not otherwise specified: - Code: '2768994' - Definition: 'A part of the body that performs a specific function. For example, - the heart is an organ.: loss of ability to function normally.: Not characterized - in any other way.' - Handle: Organ failure, not otherwise specified - Origin: caDSR - Value: Organ failure, not otherwise specified - Other cause: - Code: '2762648' - Definition: 'Not otherwise specified.: An explanation of the cause of some - phenomenon or action.' - Handle: Other cause - Origin: caDSR - Value: Other cause - PCP: - Code: '2833540' - Definition: A medical professional who provides, coordinates, or helps a patient - access a range of health care services. This is usually a medical doctor - (MD), but may also be a Doctor of Osteopathic Medicine, nurse practitioner, - clinical nurse specialist, or physician assistant, as allowed under state - law. - Handle: PCP - Origin: caDSR - Value: PCP - PDF: - Code: '2967828' - Definition: An open file format created and controlled by Adobe Systems, for - representing two-dimensional documents in a device independent and resolution - independent fixed-layout document format. Each PDF file encapsulates a - complete description of a 2D document that includes the text, fonts, images, - and 2D vector graphics that compose the document. PDF files do not encode - information that is specific to the application software, hardware, or - operating system used to create or view the document. This feature ensures - that a valid PDF will render exactly the same regardless of its origin - or destination (but depending on font availability when fonts are not - encapsulated in the file). - Handle: PDF - Origin: caDSR - Value: PDF - PLAN: - Code: '2571012' - Definition: Planned; devised, contrived, or formed in design. - Handle: PLAN - Origin: caDSR - Value: PLAN - PMB Drug Company Contact: - Code: '2578787' - Definition: The drug company employee who is authorized to serve as a primary - contact between the company and NCI CTEP Pharmaceutical Management Branch - (PMB) regarding pharmaceutical issues (drug acquisition, quality, supply, - inventory management, distribution, etc.) pertaining to the investigational - agent utilized in the NCI-sponsored clinical trial. - Handle: PMB Drug Company Contact - Origin: caDSR - Value: PMB Drug Company Contact - PNG: - Code: '11422198' - Definition: An extensible file format for lossless data compression of images. - Handle: PNG - Origin: caDSR - Value: PNG - POS: - Code: '12057580' - Definition: A sensor designed to measure the location or orientation of a - person as compared to a reference point. - Handle: POS - Origin: caDSR - Value: POS - PR: - Code: '2582144' - Definition: An independent DICOM SOP Instance that contains information on - how a particular image should be displayed. The Presentation State may - contain label information (types of Label and Positions), windowing values, - zoom value, scrolling (panning) values, rotations or any other visual - display element that is defined within the DICOM standard. - Handle: PR - Origin: caDSR - Value: PR - PT: - Code: '2581621' - Definition: A technique for measuring the gamma radiation produced by collisions - of electrons and positrons (anti-electrons) within living tissue. In positron - emission tomography (PET), a subject is given a dose of a positron-emitting - radionuclide attached to a metabolically active substance (for example, - 2-fluoro-2-deoxy-D-glucose (FDG), which is similar to a naturally occurring - sugar, glucose, with the addition of a radioactive fluorine atom). When - living tissue containing the positron emitter is bombarded by electrons, - gamma radiation produced by collisions of electrons and positrons is detected - by a scanner, revealing in fine detail the tissue location of the metabolically-active - substance administered. - Handle: PT - Origin: caDSR - Value: PT - PX: - Code: '2582140' - Definition: A panoramic or wide-view x-ray of the upper and lower jaw and - teeth. - Handle: PX - Origin: caDSR - Value: PX - Pap Smear: - Code: '2926792' - Definition: 'A biospecimen collection and staining procedure in which secretions - and superficial cells of the cervix are collected and stained with the - Papanicolaou stain followed by microscopic examination to identify the - presence of abnormal cells. ' - Handle: Pap Smear - Origin: caDSR - Value: Pap Smear - Parkinson's Disease: - Code: '3604284' - Definition: A progressive degenerative disorder of the central nervous system - characterized by loss of dopamine producing neurons in the substantia - nigra and the presence of Lewy bodies in the substantia nigra and locus - coeruleus. Signs and symptoms include tremor which is most pronounced - during rest, muscle rigidity, slowing of the voluntary movements, a tendency - to fall back, and a mask-like facial expression. - Handle: Parkinson's Disease - Origin: caDSR - Value: Parkinson's Disease - Participant: - Code: '2569287' - Definition: Someone who takes part in an activity. - Handle: Participant - Origin: caDSR - Value: Participant - Participant Chief: - Code: '2578783' - Definition: The head of a body of persons who takes part in an activity. - Handle: Participant Chief - Origin: caDSR - Value: Participant Chief - Pathologic Review: - Code: '6413969' - Definition: An assessment of disease process to include cause, development, - and/or structural and functional changes associated with the disease. - Handle: Pathologic Review - Origin: caDSR - Value: Pathologic Review - Patient: - Code: '2559728' - Definition: A person who receives medical attention, care, or treatment, or - who is registered with medical professional or institution with the purpose - to receive medical care when necessary. - Handle: Patient - Origin: caDSR - Value: Patient - Peritumoral: - Code: '13332906' - Definition: A specimen comprised of morphologically normal tissue collected - from the area immediately surrounding a tumor in an experimental subject. - Handle: Peritumoral - Origin: caDSR - Value: Peritumoral - Persistence or recurrence of underlying disease: - Code: '3837946' - Definition: 'A disease that does not go to remission despite treatment.: An - article used to connect words, phrases, or clauses representing alternatives; - used to connect alternative terms for the same thing; used in correlation; - used to correct or rephrase what was previously said; otherwise.: The - return of a disease after a period of remission.' - Handle: Persistence or recurrence of underlying disease - Origin: caDSR - Value: Persistence or recurrence of underlying disease - PhD: - Code: '2573122' - Definition: Doctor of Philosophy - Handle: PhD - Origin: caDSR - Value: PhD - PhE: - Code: '2713444' - Definition: A doctoral degree awarded on the basis of advanced study and research - in engineering. It is awarded by many American universities and is equivalent - to a PhD degree. - Handle: PhE - Origin: caDSR - Value: PhE - PharmD: - Code: '2573123' - Definition: Doctor of Pharmacy - Handle: PharmD - Origin: caDSR - Value: PharmD - Pharmaceutical Liaison: - Code: '2578785' - Definition: A person who initiates and maintains a contact or connection pertaining - to pharmacy. - Handle: Pharmaceutical Liaison - Origin: caDSR - Value: Pharmaceutical Liaison - Pharmacist: - Code: '2570576' - Definition: A person trained in pharmacy that prepares and dispenses drugs - prescribed by physicians and health practitioners. The responsibilities - include instructing patients on the use, hazards, interactions, and side - effects of any drug dispensed. - Handle: Pharmacist - Origin: caDSR - Value: Pharmacist - Pharmacologist: - Code: '2578786' - Definition: A physician, scientist, or healthcare provider that investigates - the mechanisms underlying the effects of drugs and chemicals on biological - or living systems. This knowledge is employed to help design and evaluate - drugs for the prevention and treatment of disease. - Handle: Pharmacologist - Origin: caDSR - Value: Pharmacologist - Pharmacotherapy: - Code: '6118797' - Definition: Treatment of disease through the use of drugs. - Handle: Pharmacotherapy - Origin: caDSR - Value: Pharmacotherapy - Physical Examination: - Code: '2581620' - Definition: A systemic evaluation of the body and its functions using visual - inspection, palpation, percussion and auscultation. The purpose is to - determine the presence or absence of physical signs of disease or abnormality - for an individual's health assessment. - Handle: Physical Examination - Origin: caDSR - Value: Physical Examination - Physician: - Code: '2570579' - Definition: Physician; a licensed medical practitioner. - Handle: Physician - Origin: caDSR - Value: Physician - Physician Assistant: - Code: '2668463' - Definition: A person trained and qualified to provide comprehensive diagnostic, - preventive, and therapeutic medical care and services to patients under - the guidance of the physician. A scope of physician assistant professional - activity does not include the full range of interpretation of medical - findings requiring the full professional background of the licensed physician. - Handle: Physician Assistant - Origin: caDSR - Value: Physician Assistant - Physicist: - Code: '2576288' - Definition: An individual trained and qualified to advise, administer, supervise, - or perform research or other professional and scientific work in the investigation - and application of the relations between space, time, matter, and energy - in the areas of mechanics, sound, optics, heat, electricity, magnetism, - radiation, or atomic and nuclear phenomena. - Handle: Physicist - Origin: caDSR - Value: Physicist - Plain Text Data Format: - Code: '11422197' - Definition: A data format consisting of readable textual material maintained - as a sequential file. - Handle: Plain Text Data Format - Origin: caDSR - Value: Plain Text Data Format - Pneumonia NOS: - Code: '3837945' - Definition: 'Not characterized in any other way.: Inflammation of the lungs.' - Handle: Pneumonia NOS - Origin: caDSR - Value: Pneumonia NOS - Population Member: - Code: '2576289' - Definition: An individual of a group united by a common factor; a person in - a defined cohort or group of people. - Handle: Population Member - Origin: caDSR - Value: Population Member - Practitioner: - Code: '2576290' - Definition: A person engaged in the work of a profession or occupation. - Handle: Practitioner - Origin: caDSR - Value: Practitioner - Practitioner Assigned: - Code: '2576291' - Definition: A person professionally engaged medical practice who is appointed - to a post or duties. - Handle: Practitioner Assigned - Origin: caDSR - Value: Practitioner Assigned - Prefer not to answer: - Code: '5684650' - Definition: A response indicating that an individual prefers or preferred - not to answer. - Handle: Prefer not to answer - Origin: caDSR - Value: Prefer not to answer - Primary CDUS Contact: - Code: '2573708' - Definition: A primary person within the Cooperative Group, institution, clinical - site, or/and particular study that is responsible for the clinical trial - data completion and submission to NCI via Clinical Data Update System - (CDUS). - Handle: Primary CDUS Contact - Origin: caDSR - Value: Primary CDUS Contact - Primary Shipping Designee: - Code: '2578788' - Definition: The principal person of contact who denotes where and to whom - pharmaceuticals are to be shipped. The person of contact is assigned by - the principal investigator and registered with the NCI CTEP Pharmaceutical - Management Branch (PMB) as with a distributor of (investigational new - drugs (INDs) for all NCI-sponsored trials. In addition, this person is - authorized to place orders for investigational agents with PMB, requests - drug transfers, and maintains drug inventory documentation at the clinical - site. Investigational agents are shipped from the PMB directly to the - institution or the investigator's practice site where the agent will be - prepared and administered. - Handle: Primary Shipping Designee - Origin: caDSR - Value: Primary Shipping Designee - Primary care physician: - Code: '2833540' - Definition: A medical professional who provides, coordinates, or helps a patient - access a range of health care services. This is usually a medical doctor - (MD), but may also be a Doctor of Osteopathic Medicine, nurse practitioner, - clinical nurse specialist, or physician assistant, as allowed under state - law. - Handle: Primary care physician - Origin: caDSR - Value: Primary care physician - Principal Investigator: - Code: '2576268' - Definition: An investigator who is responsible for all aspects of the conduct - of a study. - Handle: Principal Investigator - Origin: caDSR - Value: Principal Investigator - Principal Investigator (MGR): - Code: '2573711' - Definition: An investigator who is responsible for all aspects of the conduct - of a study. - Handle: Principal Investigator (MGR) - Origin: caDSR - Value: Principal Investigator (MGR) - Prior malignancy: - Code: '2774527' - Definition: 'Earlier in time or order.: A tumor composed of atypical neoplastic, - often pleomorphic cells that invade other tissues. Malignant neoplasms - usually metastasize to distant anatomic sites and may recur after excision. The - most common malignant neoplasms are carcinomas (adenocarcinomas or squamous - cell carcinomas), Hodgkin''s and non-Hodgkin''s lymphomas, leukemias, - melanomas, and sarcomas. -- 2004' - Handle: Prior malignancy - Origin: caDSR - Value: Prior malignancy - Prof.: - Code: '2581629' - Definition: A courtesy title for a teacher of the highest academic rank in - a college or university. - Handle: Prof. - Origin: caDSR - Value: Prof. - Program Director: - Code: '2578789' - Definition: A professional who holds a leadership administrative, research, - or academic position within a scientific program. A program director is - responsible for the overall direction in the conduct of research; provision - and coordination of training and education; operations, staffing, and - maintenance of research facilities; development of new research activities; - developing and maintaining relationships with other agencies, programs, - scientific centers and departments, as well as with communities. - Handle: Program Director - Origin: caDSR - Value: Program Director - Program Specialist: - Code: '2573717' - Definition: A professional with expertise in a scientific discipline, that - can provide insight and advice to the program staff. - Handle: Program Specialist - Origin: caDSR - Value: Program Specialist - Project Coordinator: - Code: '2578790' - Definition: A staff member who is responsible for the overall integration - and interaction of different people and different components of subject - matter associated with a specific project. - Handle: Project Coordinator - Origin: caDSR - Value: Project Coordinator - Project Officer: - Code: '2573718' - Definition: A staff member who coordinates the substantive aspects of a contract - from planning a request for proposals to oversight after award. - Handle: Project Officer - Origin: caDSR - Value: Project Officer - Protocol Author: - Code: '2576267' - Definition: A person who is the writer of a structured research study. - Handle: Protocol Author - Origin: caDSR - Value: Protocol Author - Protocol Chair: - Code: '2578791' - Definition: A person at the primary location of research that retains the - responsibility for regulation compliance and ensures the proper administration - of the objectives, study design, and methodology of study. - Handle: Protocol Chair - Origin: caDSR - Value: Protocol Chair - Protocol Chair at an Organization: - Code: '2573698' - Definition: A person at a business or administrative group that retains the - responsibility for regulation compliance and ensures the proper administration - of the objectives, study design, and methodology of study. - Handle: Protocol Chair at an Organization - Origin: caDSR - Value: Protocol Chair at an Organization - Protocol Lead Investigator: - Code: '2578792' - Definition: Primary clinical researcher of a clinical trial, ultimately responsible - for all aspects in the conduct of a study, but has special responsibility - with regard to the implementation and administration of the study design, - and methodology of a trial. - Handle: Protocol Lead Investigator - Origin: caDSR - Value: Protocol Lead Investigator - Protocol Review Chair: - Code: '2573719' - Definition: The presiding officer of a meeting, organization, or committee - that is responsible for the analysis and evaluation of the detailed plan - that sets forth the objectives, study design, and methodology for a clinical - trial. - Handle: Protocol Review Chair - Origin: caDSR - Value: Protocol Review Chair - Protocol Specialist: - Code: '2578793' - Definition: A staff member assigned primary responsibility for fulfilling - core responsibilities for a specific study. Manages the protocol development - and review process, working closely with the Protocol Chair and the study - team to develop the protocol and prepare responses. Coordinates the protocol - development and study implementation teams throughout study development - and conduct. - Handle: Protocol Specialist - Origin: caDSR - Value: Protocol Specialist - Proton Beam Radiation Therapy: - Code: '3287226' - Definition: A type of external beam radiation therapy using a beam of protons. - It has the advantage of precisely localizing the radiation dose on the - targeted tissue and avoiding damage to the healthy surrounding tissues. - Handle: Proton Beam Radiation Therapy - Origin: caDSR - Value: Proton Beam Radiation Therapy - Protozoal infection: - Code: '2573841' - Definition: Infections with unicellular organisms of the subkingdom PROTOZOA. - Handle: Protozoal infection - Origin: caDSR - Value: Protozoal infection - Pulmonary Disease: - Code: '5054452' - Definition: A non-neoplastic or neoplastic disorder affecting the lung. Representative - examples of non-neoplastic disorders include chronic obstructive pulmonary - disease and pneumonia. Representative examples of neoplastic disorders - include benign processes (e.g., respiratory papilloma) and malignant processes - (e.g., lung carcinoma and metastatic cancer to the lung). - Handle: Pulmonary Disease - Origin: caDSR - Value: Pulmonary Disease - Pulmonary Embolism: - Code: '2770974' - Definition: The closure of the pulmonary artery or one of its branches by - an embolus, sometimes associated with infarction of the lung. - Handle: Pulmonary Embolism - Origin: caDSR - Value: Pulmonary Embolism - Pulmonary failure: - Code: '2768984' - Definition: 'Relating to the lungs.: loss of ability to function normally.' - Handle: Pulmonary failure - Origin: caDSR - Value: Pulmonary failure - Pulmonary hemorrhage: - Code: '2750111' - Definition: 'Relating to the lungs.: Bleeding or escape of blood from a vessel.' - Handle: Pulmonary hemorrhage - Origin: caDSR - Value: Pulmonary hemorrhage - Python Script Format: - Code: '11422199' - Definition: A plain text file that stores python code. - Handle: Python Script Format - Origin: caDSR - Value: Python Script Format - R File Format: - Code: '11422200' - Definition: A file format used for writing scripts in the R programming language - for execution within the R software environment, typically for statistical - computation and graphics. - Handle: R File Format - Origin: caDSR - Value: R File Format - R Markdown: - Code: '11422201' - Definition: A file format for making dynamic documents written in R. It is - written in plain text format and contains chunks of embedded R code. - Handle: R Markdown - Origin: caDSR - Value: R Markdown - R.: - Code: '2573584' - Definition: A courtesy title of respect for the leader of a Jewish congregation, - the chief religious official of a synagogue, or a Jewish scholar or teacher. - Handle: R. - Origin: caDSR - Value: R. - REG: - Code: '12057582' - Definition: The process of transforming sets of image data from different - times or perspectives into one coordinate system. - Handle: REG - Origin: caDSR - Value: REG - RESP: - Code: '12057587' - Definition: A graphical representation of the breathing pattern in a patient. - Handle: RESP - Origin: caDSR - Value: RESP - RF: - Code: '2582130' - Definition: Examination of the tissues and deep structures of the body by - x-ray, using the fluoroscope, a device that produces an image when x-rays - strike a fluorescent screen. - Handle: RF - Origin: caDSR - Value: RF - RG: - Code: '2582126' - Definition: A radiographic procedure using the emission of x-rays to form - an image of the structure penetrated by the radiation. - Handle: RG - Origin: caDSR - Value: RG - RTDOSE: - Code: '2582133' - Definition: The amount of radiation administered during a therapy session. - Handle: RTDOSE - Origin: caDSR - Value: RTDOSE - RTIMAGE: - Code: '2582132' - Definition: An image produced on a radiosensitive surface by x-ray radiation - that has penetrated and passed through a structure. - Handle: RTIMAGE - Origin: caDSR - Value: RTIMAGE - RTPLAN: - Code: '2582135' - Definition: The design for radiation therapy. - Handle: RTPLAN - Origin: caDSR - Value: RTPLAN - RTRECORD: - Code: '2582136' - Definition: A record generated from radiation therapy. - Handle: RTRECORD - Origin: caDSR - Value: RTRECORD - RTSTRUCT: - Code: '2582134' - Definition: An object of the DICOM standard used for the transfer of patient - structures and related data defined on CT scanners, virtual simulation - workstations, treatment planning systems and similar devices. - Handle: RTSTRUCT - Origin: caDSR - Value: RTSTRUCT - RWV: - Code: '12057589' - Definition: The representation of the stored pixel values of referenced images - into some Real World value in defined units. This allows the capture of - retrospectively determined mappings, e.g., for values that cannot be determined - at the time of image acquisition and encoding. - Handle: RWV - Origin: caDSR - Value: RWV - Radiation Exposure: - Code: '6607858' - Definition: 'Exposure to radioactive materials or ionizing radiation, whether - by external irradiation, contact or contamination with radioactive material, - or incorporation of radioactive materials, as in the case of certain diagnostic - procedures. ' - Handle: Radiation Exposure - Origin: caDSR - Value: Radiation Exposure - Radiation IP: - Code: '3854250' - Definition: "Treatment of a disease by means of exposure of the target or - the whole body to radiation. Radiation therapy is often used as part - of curative therapy and occasionally as a component of palliative treatment - for cancer. Other uses include total body irradiation prior to transplantation.: - Inflammation of interstitial lung tissue, usually associated with infection.\r - \n" - Handle: Radiation IP - Origin: caDSR - Value: Radiation IP - Radiation Oncologist: - Code: '2576269' - Definition: (ray-dee-AY-shun on-KOL-o-jist) A doctor who specializes in using - radiation to treat cancer. - Handle: Radiation Oncologist - Origin: caDSR - Value: Radiation Oncologist - Radiation Therapy: - Code: '3588318' - Definition: Treatment of a disease by means of exposure of the target or the - whole body to radiation. Radiation therapy is often used as part of curative - therapy and occasionally as a component of palliative treatment for cancer. - Other uses include total body irradiation prior to transplantation. - Handle: Radiation Therapy - Origin: caDSR - Value: Radiation Therapy - Radiofrequency Ablation: - Code: '3029158' - Definition: A therapeutic procedure to eradicate or reduce small tumors using - radiowaves to generate heat. The procedure is performed by the insertion - of a thin needle through the skin and into a tumor, which is guided by - computed tomography (CT) or ultrasound. Electrical energy delivered through - this needle (electrode) heats and destroys the tumor. This therapeutic - option is widely utilized by patients that have inoperable cancers, or - are unsuitable chemotherapy candidates. - Handle: Radiofrequency Ablation - Origin: caDSR - Value: Radiofrequency Ablation - Radon Exposure: - Code: '11167653' - Definition: Inhalation of radon gas which is found in rocks, soil and groundwater - as a result of radioactive decay of uranium, thorium, or radium in the - environment. - Handle: Radon Exposure - Origin: caDSR - Value: Radon Exposure - Recurrence/persistence/progression of disease reported for first HSCT: - Code: '2768983' - Definition: 'To come back or to return.: Retained; never-ceasing.: Cancer - that is increasing in scope or severity.' - Handle: Recurrence/persistence/progression of disease reported for first HSCT - Origin: caDSR - Value: Recurrence/persistence/progression of disease reported for first HSCT - Referring Pathologist: - Code: '2578794' - Definition: A pathologist that directs a patient to an additional source of - medical expertise for assistance, examination, information, or treatment. - Handle: Referring Pathologist - Origin: caDSR - Value: Referring Pathologist - Referring Physician: - Code: '2569167' - Definition: A physician that directs a patient to an additional source of - medical expertise for assistance, examination, information, or treatment. - Handle: Referring Physician - Origin: caDSR - Value: Referring Physician - Regional: - Code: '2971661' - Definition: A disease or condition that extends beyond the site and spreads - into adjacent tissues and regional lymph nodes. - Handle: Regional - Origin: caDSR - Value: Regional - Regional Disease: - Code: '2971661' - Definition: A disease or condition that extends beyond the site and spreads - into adjacent tissues and regional lymph nodes. - Handle: Regional Disease - Origin: caDSR - Value: Regional Disease - Registrar: - Code: '2576272' - Definition: Registrar; someone responsible for keeping records. - Handle: Registrar - Origin: caDSR - Value: Registrar - Registration Coordinator: - Code: '2578795' - Definition: A person that is responsible for the integration and collation - of subject information and participation throughout the duration of the - clinical trial, and subsequent follow-up. - Handle: Registration Coordinator - Origin: caDSR - Value: Registration Coordinator - Regulatory Coordinator: - Code: '2578796' - Definition: A person that is responsible for ensuring compliance with government - regulations and interacts with the regulatory agencies regarding toxicity, - protocol administration, and drug approval procedures. - Handle: Regulatory Coordinator - Origin: caDSR - Value: Regulatory Coordinator - Renal Disorder, NOS: - Code: '2975595' - Definition: A neoplastic or non-neoplastic condition affecting the kidney. - Representative examples of non-neoplastic conditions include glomerulonephritis - and nephrotic syndrome. Representative examples of neoplastic conditions - include benign processes (e.g., renal lipoma and renal fibroma) and malignant - processes (e.g., renal cell carcinoma and renal lymphoma). - Handle: Renal Disorder, NOS - Origin: caDSR - Value: Renal Disorder, NOS - Renal failure: - Code: '2768982' - Definition: Acute or chronic condition, characterized by the inability of - the kidneys to adequately filter the blood substances, resulting in uremia - and electrolyte imbalances. Acute renal failure is usually associated - with oliguria or anuria, hyperkalemia, and pulmonary edema. Chronic renal - failure is irreversible and requires hemodialysis.--2004 - Handle: Renal failure - Origin: caDSR - Value: Renal failure - Representative Investigator: - Code: '2576270' - Definition: Representative Investigator - Handle: Representative Investigator - Origin: caDSR - Value: Representative Investigator - Research Clinician: - Code: '2576271' - Definition: A physician who is involved in the treatment and observation of - patients as part of a systematic investigation. - Handle: Research Clinician - Origin: caDSR - Value: Research Clinician - Research Nurse: - Code: '2578797' - Definition: A nurse who is involved in the treatment and observation of patients - as part of a systematic investigation. - Handle: Research Nurse - Origin: caDSR - Value: Research Nurse - Research Pathologist: - Code: '2576274' - Definition: Research Pathologist - Handle: Research Pathologist - Origin: caDSR - Value: Research Pathologist - Respirable Crystalline Silica Exposure: - Code: '11167652' - Definition: Environmental, occupational or consumer-based exposure to respirable - particles derived from industrial processing or breakdown of silica-containing - materials such as sand, concrete, stone, mortar, bricks, glass, pottery - and ceramics. - Handle: Respirable Crystalline Silica Exposure - Origin: caDSR - Value: Respirable Crystalline Silica Exposure - Respiratory failure: - Code: '2946095' - Definition: Impaired gas exchange by the respiratory system resulting in hypoxemia - and decreased oxygenation of the tissues that may be associated with increased - arterial levels of carbon dioxide. Causes include chronic obstructive - pulmonary disease, asthma, emphysema, acute respiratory distress syndrome, - pneumonia, pulmonary edema, pneumothorax, and congestive heart failure. - Handle: Respiratory failure - Origin: caDSR - Value: Respiratory failure - Respondent: - Code: '14913143' - Definition: A person in a clinical trial other than the subject who provides - responses about the subject on their behalf, but not as an observer. - Handle: Respondent - Origin: caDSR - Value: Respondent - Rev.: - Code: '2573581' - Definition: A courtesy title of respect applied or prefixed to the name of - a member of the clergy or a religious order. - Handle: Rev. - Origin: caDSR - Value: Rev. - Review Liaison: - Code: '2578798' - Definition: A person that maintains communication between the investigators - that submit funding proposals and the officials in charge of review at - the institution that fund the proposals. - Handle: Review Liaison - Origin: caDSR - Value: Review Liaison - Review Specialist: - Code: '2573720' - Definition: An individual with expertise in one or more scientific disciples - that can evaluate and review scientific data and funding proposals. - Handle: Review Specialist - Origin: caDSR - Value: Review Specialist - Reviewing Pathologist: - Code: '2578801' - Definition: A pathologist that inspects and verifies diagnoses, clinical data, - grant or scientific proposals. - Handle: Reviewing Pathologist - Origin: caDSR - Value: Reviewing Pathologist - Reviewing Radiologist: - Code: '2578799' - Definition: A radiologist that formally inspects and verifies diagnoses, clinical - data, treatment plans, and grant or scientific proposals. - Handle: Reviewing Radiologist - Origin: caDSR - Value: Reviewing Radiologist - SDRF: - Code: '11422202' - Definition: A tab-delimited file describing the relationships between samples, - arrays, data and other objects used or produced during a microarray experiment. - Handle: SDRF - Origin: caDSR - Value: SDRF - SEG: - Code: '2985472' - Definition: The process of assigning a label to every pixel in an image such - that pixels with the same label share certain visual characteristics, - allowing the image to be partitioned into multiple segments (e.g., boundaries, - lines, curves). - Handle: SEG - Origin: caDSR - Value: SEG - SHE Instructor: - Code: '8094007' - Definition: Survivorship Health Education Instructor - Handle: SHE Instructor - Origin: caDSR - Value: SHE Instructor - SM: - Code: '2582142' - Definition: Microscopy that uses a sample affixed to a slide. - Handle: SM - Origin: caDSR - Value: SM - SMR: - Code: '2582152' - Definition: Pairs of images that may be viewed together in stereo. - Handle: SMR - Origin: caDSR - Value: SMR - SR: - Code: '2582149' - Definition: A document type consisting of a document header and a document - body. - Handle: SR - Origin: caDSR - Value: SR - SRF: - Code: '12057623' - Definition: A technique of determining the combination of spherical and cylindrical - lenses that will result in the best-corrected visual acuity. The process - involves the patient fixating at the Snellen Chart, while the clinician - presents a variety of lenses and alters the power of the lenses in the - trial frames according to the patient's subjective responses regarding - improvements to their vision. - Handle: SRF - Origin: caDSR - Value: SRF - ST: - Code: '2582127' - Definition: A type of tomography in which gamma photon-emitting radionuclides - are administered to the patient and then detected by one or more gamma - cameras rotated around the patient. From the series of two-dimensional - images produced, a three-dimensional image can be created by computer - reconstruction. - Handle: ST - Origin: caDSR - Value: ST - STAIN: - Code: '12057624' - Definition: An instrument designed to automate the process of staining specimens - affixed to slides. - Handle: STAIN - Origin: caDSR - Value: STAIN - SVG: - Code: '11422204' - Definition: A specification for describing vector graphics using extensible - markup language. - Handle: SVG - Origin: caDSR - Value: SVG - SVS: - Code: '11426797' - Definition: An electronic file format based on TIFF that is used for storing - multiple high-resolution images in a single electronic file. - Handle: SVS - Origin: caDSR - Value: SVS - ScD: - Code: '2573109' - Definition: Doctor of Science - Handle: ScD - Origin: caDSR - Value: ScD - Scientific Monitor: - Code: '2578802' - Definition: An individual with expertise in one or more scientific disciples - that can evaluate and review scientific data generated during a study. - The individual reviews study records to determine that a study is being - conducted in accordance with the protocol and works with the clinical - research coordinator to check all data and documentation from the study. - Handle: Scientific Monitor - Origin: caDSR - Value: Scientific Monitor - Secondary CDUS Contact: - Code: '2578803' - Definition: A subordinate person within the Cooperative Group, institution, - clinical site, or/and particular study that is responsible for the clinical - trial data completion and submission to NCI via Clinical Data Update System - (CDUS). - Handle: Secondary CDUS Contact - Origin: caDSR - Value: Secondary CDUS Contact - Sepsis: - Code: '2946181' - Definition: The presence of pathogenic microorganisms in the blood stream - causing a rapidly progressing systemic reaction that may lead to shock. - Symptoms include fever, chills, tachycardia, and increased respiratory - rate. It is a medical emergency that requires urgent medical attention. - Handle: Sepsis - Origin: caDSR - Value: Sepsis - Sequence Record Format: - Code: '11422203' - Definition: Any file format designed to store molecular sequence data. - Handle: Sequence Record Format - Origin: caDSR - Value: Sequence Record Format - Shipping Designee: - Code: '2578804' - Definition: A person of contact that denotes where, and to whom pharmaceuticals - are to be shipped. The person is assigned by the principal investigator - and registered with the NCI CTEP Pharmaceutical Management Branch (PMB) - as a distributor of investigational new drugs (INDs) for all NCI-sponsored - trials. Additionally, this person is authorized to place orders for investigational - agents with PMB, requests drug transfers, and maintains drug inventory - documentation at the clinical site. Investigational agents are shipped - from the PMB directly to the institution or the investigator's practice - site where the agent will be prepared and administered. - Handle: Shipping Designee - Origin: caDSR - Value: Shipping Designee - Sinusoidal Obstruction Syndrome: - Code: '2793925' - Definition: Blockage of the small- or medium-sized hepatic veins due to nonthrombotic - subendothelial edema which may progress to fibrosis. - Handle: Sinusoidal Obstruction Syndrome - Origin: caDSR - Value: Sinusoidal Obstruction Syndrome - Site Coordinator: - Code: '2578805' - Definition: "The staff member at the organization who is responsible for program - management of the study and functions as the primary contact at the - organization.\r\n" - Handle: Site Coordinator - Origin: caDSR - Value: Site Coordinator - Site Investigator: - Code: '2573700' - Definition: An investigator designated to a specific study location. - Handle: Site Investigator - Origin: caDSR - Value: Site Investigator - Site Leader: - Code: '2573721' - Definition: A person in charge of a group at the location of a research project. - Handle: Site Leader - Origin: caDSR - Value: Site Leader - Site Personnel: - Code: '7639691' - Definition: Site Personnel - Handle: Site Personnel - Origin: caDSR - Value: Site Personnel - Site Representative Investigator: - Code: '2578806' - Definition: The investigator who officially represents a clinical site that - participates in a multicentral clinical trial. The responsibilities of - the official include the management of site compliance with rules and - regulations and attention to personnel and patient requisites. - Handle: Site Representative Investigator - Origin: caDSR - Value: Site Representative Investigator - Smoke Exposure: - Code: '11167655' - Definition: Environmental, occupational or consumer-based exposure to airborne - gases and particulates produced when materials undergo combustion or thermal - decomposition. - Handle: Smoke Exposure - Origin: caDSR - Value: Smoke Exposure - Smokeless Tobacco Exposure: - Code: '11167688' - Definition: Environmental, occupational, or consumer-based exposure to any - smokeless tobacco product. - Handle: Smokeless Tobacco Exposure - Origin: caDSR - Value: Smokeless Tobacco Exposure - Social Worker: - Code: '2569169' - Definition: A professional trained to talk with people and their families - about emotional or physical needs, and to find them support services. - Handle: Social Worker - Origin: caDSR - Value: Social Worker - Spinal Muscular Atrophy: - Code: '3211451' - Definition: An inherited disorder characterized by degeneration of the spinal - cord and the cerebellum. Symptoms may appear at any age and include progressive - loss of coordination of gait, hands, speech, and eye movements. - Handle: Spinal Muscular Atrophy - Origin: caDSR - Value: Spinal Muscular Atrophy - Sponsor: - Code: '2576275' - Definition: A person or organization that supports or champions something. - Handle: Sponsor - Origin: caDSR - Value: Sponsor - Sponsor Medical Expert: - Code: '2578810' - Definition: A physician or health care provider selected by the sponsor to - be readily available to advise clinical trial officials on trial related - medical questions or problems. - Handle: Sponsor Medical Expert - Origin: caDSR - Value: Sponsor Medical Expert - Sponsor/Medical Expert: - Code: '2576276' - Definition: Sponsor/Medical Expert - Handle: Sponsor/Medical Expert - Origin: caDSR - Value: Sponsor/Medical Expert - Sr.: - Code: '2577070' - Definition: A suffix used to distinguish a father from his son when they have - the same given name. - Handle: Sr. - Origin: caDSR - Value: Sr. - Statistician: - Code: '2578807' - Definition: A person responsible for the compilation, organization, and analysis - of mathematical data. - Handle: Statistician - Origin: caDSR - Value: Statistician - Stereotactic Body Radiation Therapy: - Code: '3193538' - Definition: Stereotactic radiation therapy in which one or several maximum - dose radiation treatments are delivered targeting cancers of the body, - excluding the brain or spine. - Handle: Stereotactic Body Radiation Therapy - Origin: caDSR - Value: Stereotactic Body Radiation Therapy - Stereotactic Radiosurgery: - Code: '2578537' - Definition: A type of external radiation therapy that uses special equipment - to position the patient and precisely give a single large dose of radiation - to a tumor. It is used to treat brain tumors and other brain disorders - that cannot be treated by regular surgery. It is also being studied in - the treatment of other types of cancer. - Handle: Stereotactic Radiosurgery - Origin: caDSR - Value: Stereotactic Radiosurgery - Study Chair: - Code: '2578808' - Definition: A person who is responsible for providing overall management for - the operation of the study, and for reporting to the Data and Safety Monitoring - Board. The continual review of the data by an independent individual or - DSMB assures the investigator(s) that the trial can continue without jeopardizing - patient safety. - Handle: Study Chair - Origin: caDSR - Value: Study Chair - Study Chairperson: - Code: '2576277' - Definition: A person who is responsible for providing overall management for - the operation of the study, and for reporting to the Data and Safety Monitoring - Board. The continual review of the data by an independent individual or - DSMB assures the investigator(s) that the trial can continue without jeopardizing - patient safety. - Handle: Study Chairperson - Origin: caDSR - Value: Study Chairperson - Study Coordinator: - Code: '2578809' - Definition: A person who handles most of the administrative responsibilities - of a clinical study, acts as liaison between investigative site and sponsor, - and reviews all data and records before a monitor's visit. - Handle: Study Coordinator - Origin: caDSR - Value: Study Coordinator - Subject Recruiter: - Code: '2578811' - Definition: A person whose task is to identify and enroll individuals into - a research study. - Handle: Subject Recruiter - Origin: caDSR - Value: Subject Recruiter - Submitting Pathologist: - Code: '2578812' - Definition: A pathologist that submits a proposal or letter of intent to participate - in a study or who submits results or diagnoses for use in a study. - Handle: Submitting Pathologist - Origin: caDSR - Value: Submitting Pathologist - Suicide: - Code: '2572283' - Definition: The act of ending one's own life. - Handle: Suicide - Origin: caDSR - Value: Suicide - Surgeon: - Code: '2576273' - Definition: A physician who treats disease, injury, and deformity by operation - or manipulation. - Handle: Surgeon - Origin: caDSR - Value: Surgeon - Surgical Complication: - Code: '13204085' - Definition: A disease or disorder that occurs during, soon after or as a result - of a surgical procedure. - Handle: Surgical Complication - Origin: caDSR - Value: Surgical Complication - Surgical Oncologist: - Code: '2854825' - Definition: A doctor who performs biopsies and other surgical procedures in - cancer patients. - Handle: Surgical Oncologist - Origin: caDSR - Value: Surgical Oncologist - Surgical Procedure: - Code: '3440172' - Definition: A diagnostic or treatment procedure performed by manual and/or - instrumental means, often involving an incision and the removal or replacement - of a diseased organ or tissue; of or relating to or involving or used - in surgery or requiring or amenable to treatment by surgery. - Handle: Surgical Procedure - Origin: caDSR - Value: Surgical Procedure - Surgical Resection: - Code: '7343802' - Definition: The surgical removal of an organ or a part of an organ. - Handle: Surgical Resection - Origin: caDSR - Value: Surgical Resection - TAR: - Code: '11426798' - Definition: A file format generated by the Unix command-line utility tar (tape - archive). It is used for collecting many files into one archive file. - Handle: TAR - Origin: caDSR - Value: TAR - TEXTUREMAP: - Code: '12057625' - Definition: A two-dimensional image file that stores information describing - surface texture details across a specimen or image. - Handle: TEXTUREMAP - Origin: caDSR - Value: TEXTUREMAP - TG: - Code: '2582128' - Definition: Computed tomography that describes temperature details across - a surface. - Handle: TG - Origin: caDSR - Value: TG - TIFF: - Code: '11426800' - Definition: A bitmap graphics file format utilizing tagged fields. - Handle: TIFF - Origin: caDSR - Value: TIFF - TSV: - Code: '11426801' - Definition: A file format where each line in the file contains a single piece - of data and where each field or value in a line of data is separated from - the next by a tab character. - Handle: TSV - Origin: caDSR - Value: TSV - TXT: - Code: '11422197' - Definition: A data format consisting of readable textual material maintained - as a sequential file. - Handle: TXT - Origin: caDSR - Value: TXT - Targeted Molecular Therapy: - Code: '2793528' - Definition: Cancer therapies designed to act upon specific molecules in metabolic - pathways or processes involved in carcinogenesis, tumor growth, or tumor - spread. - Handle: Targeted Molecular Therapy - Origin: caDSR - Value: Targeted Molecular Therapy - ThD: - Code: '2713443' - Definition: A doctoral degree in theology. It is a research degree, involving - the publication of an original contribution to scholarship in the form - of a dissertation, that is for most purposes the equivalent of a Doctor - of Philosophy in Theology or a similar discipline. - Handle: ThD - Origin: caDSR - Value: ThD - Thermo RAW: - Code: '11426799' - Definition: A proprietary file format developed by Thermo Scientific to capture - mass spectrometry data produced by Thermo mass spectrometers. - Handle: Thermo RAW - Origin: caDSR - Value: Thermo RAW - Thoracentesis: - Code: '2574293' - Definition: The removal of excess fluid via needle puncture from the thoracic - cavity. - Handle: Thoracentesis - Origin: caDSR - Value: Thoracentesis - Thromboembolic: - Code: '2768980' - Definition: Obstruction of a vessel by a blood clot that has been transported - from a distant site by the blood stream. - Handle: Thromboembolic - Origin: caDSR - Value: Thromboembolic - Thrombosis: - Code: '4792371' - Definition: The formation of a blood clot in the lumen of a vessel or heart - chamber; causes include coagulation disorders and vascular endothelial - injury. - Handle: Thrombosis - Origin: caDSR - Value: Thrombosis - Thrombotic thrombocytopenic purpura (HUS/TTP): - Code: '2769001' - Definition: Purpura associated with a reduction in circulating blood platelets - which can result from a variety of factors. - Handle: Thrombotic thrombocytopenic purpura (HUS/TTP) - Origin: caDSR - Value: Thrombotic thrombocytopenic purpura (HUS/TTP) - Tobacco Related Exposure: - Code: '11167650' - Definition: Environmental, occupational or consumer-based exposure to airborne - gases and particulates produced by direct or nearby use of a vaporized - or combusted tobacco product. - Handle: Tobacco Related Exposure - Origin: caDSR - Value: Tobacco Related Exposure - Toxicity: - Code: '4615972' - Definition: The finding of bodily harm due to the poisonous effects of something. - Handle: Toxicity - Origin: caDSR - Value: Toxicity - Translator: - Code: '2576584' - Definition: A person or program involved in revealing the meaning of a text - or spoken language into a form recognized by the target audience. - Handle: Translator - Origin: caDSR - Value: Translator - Treating Physician: - Code: '2576278' - Definition: The physician who directly administers medical aid to a patient - or study subject. - Handle: Treating Physician - Origin: caDSR - Value: Treating Physician - Tumor: - Code: '3184945' - Definition: A tissue sample, or entire tumor that is removed for microscopic - examination. - Handle: Tumor - Origin: caDSR - Value: Tumor - Tumor Debulking: - Code: '2980356' - Definition: The surgical removal of as much of a malignant tumor as is reasonably - possible. This procedure increases the effectiveness of the subsequent - administration of chemotherapy and/or radiation therapy. - Handle: Tumor Debulking - Origin: caDSR - Value: Tumor Debulking - Tumor Free: - Code: '6719428' - Definition: There is no evidence of a tumor in the individual. - Handle: Tumor Free - Origin: caDSR - Value: Tumor Free - US: - Code: '2580423' - Definition: A technique in which high-frequency sound waves are bounced off - internal organs and the echo pattern is converted into a 2 dimensional - picture of the structures beneath the transducer. - Handle: US - Origin: caDSR - Value: US - Ultrasound Guided Biopsy: - Code: '5027135' - Definition: A biopsy procedure that uses an ultrasound imaging device to find - an abnormal area of tissue and guide its removal for examination under - a microscope. - Handle: Ultrasound Guided Biopsy - Origin: caDSR - Value: Ultrasound Guided Biopsy - Ultrasound Imaging: - Code: '5612303' - Definition: A technique in which high-frequency sound waves are bounced off - internal organs and the echo pattern is converted into a 2 dimensional - picture of the structures beneath the transducer. - Handle: Ultrasound Imaging - Origin: caDSR - Value: Ultrasound Imaging - Unacceptable Toxicity: - Code: '13571067' - Definition: Therapy-related toxicity leading to multiple treatment dose reductions - or delays, early treatment stoppage, unplanned hospital admission, or - death. - Handle: Unacceptable Toxicity - Origin: caDSR - Value: Unacceptable Toxicity - Unclassified infection / Infection NOS: - Code: '3837944' - Definition: 'Not characterized in any other way.: Not arranged or included - in any specific grouping.: A disorder resulting from the presence and - activity of a microbial, viral, or parasitic agent. It can be transmitted - by direct or indirect contact.' - Handle: Unclassified infection / Infection NOS - Origin: caDSR - Value: Unclassified infection / Infection NOS - Uncompressed: - Code: '11480564' - Definition: A file containing data that is in an uncompressed state. - Handle: Uncompressed - Origin: caDSR - Value: Uncompressed - Unknown: - Code: '5682953' - Definition: Not known, not observed, not recorded, or refused. - Handle: Unknown - Origin: caDSR - Value: Unknown - Unspecified: - Code: '2573360' - Definition: Not stated explicitly or in detail. - Handle: Unspecified - Origin: caDSR - Value: Unspecified - VA: - Code: '12057626' - Definition: Sharpness of vision, the ability to discern fine detail. - Handle: VA - Origin: caDSR - Value: VA - VCF: - Code: '11426802' - Definition: A text-based electronic file used for storing gene sequence variation - data. The first text section is composed of a header containing the metadata - and keywords used in the file. This is followed by the body of the file - which is tab-separated into eight mandatory data columns for each sample. - Additionally, the body of the file can include an unlimited number of - optional columns to record other sample-related data. - Handle: VCF - Origin: caDSR - Value: VCF - VF: - Code: '2582157' - Definition: Videofluorography (retired) - Handle: VF - Origin: caDSR - Value: VF - VOD: - Code: '2768635' - Definition: Disorder in which veins are partially or completely obstructed - or the blood flow through the veins is suboptimal.--2004 - Handle: VOD - Origin: caDSR - Value: VOD - Vascular, not otherwise specified: - Code: '2768978' - Definition: 'Relating to or containing blood vessels.: Not characterized in - any other way.' - Handle: Vascular, not otherwise specified - Origin: caDSR - Value: Vascular, not otherwise specified - Veno-occlusive disease (VOD) / sinusodial obstruction syndrome (SOS): - Code: '2793925' - Definition: Blockage of the small- or medium-sized hepatic veins due to nonthrombotic - subendothelial edema which may progress to fibrosis. - Handle: Veno-occlusive disease (VOD) / sinusodial obstruction syndrome (SOS) - Origin: caDSR - Value: Veno-occlusive disease (VOD) / sinusodial obstruction syndrome (SOS) - Viral infection: - Code: '2768976' - Definition: A general term for diseases produced by viruses. - Handle: Viral infection - Origin: caDSR - Value: Viral infection - White: - Code: '2572236' - Definition: Denotes person with European, Middle Eastern, or North African - ancestral origin who identifies, or is identified, as White. - Handle: White - Origin: caDSR - Value: White - With Tumor: - Code: '6719426' - Definition: There is evidence of a tumor in an individual. - Handle: With Tumor - Origin: caDSR - Value: With Tumor - Wood Dust Exposure: - Code: '11167654' - Definition: Environmental or occupational exposure to granular solids generated - when timber is processed, such as when it is chipped, sawed, turned, drilled - or sanded. - Handle: Wood Dust Exposure - Origin: caDSR - Value: Wood Dust Exposure - X: - Code: '14305179' - Definition: A gender designation for individuals who identify themselves as - not exclusively male nor female, such as non-binary, intersex or gender-non-conforming. - Handle: X - Origin: caDSR - Value: X - XA: - Code: '2582129' - Definition: The X-ray examination of the blood vessels or chambers of the - heart. - Handle: XA - Origin: caDSR - Value: XA - XC: - Code: '2582143' - Definition: Photographic image acquisition using a camera mounted externally - from the subject. - Handle: XC - Origin: caDSR - Value: XC - XLS: - Code: '11426803' - Definition: A proprietary binary file format used to store spreadsheet data - in Microsoft Excel. - Handle: XLS - Origin: caDSR - Value: XLS - XLSX: - Code: '11426804' - Definition: A proprietary file format developed by Microsoft that allows the - user to save a spreadsheet created in Excel in an open XML-format. The - file then can be read and opened by other spreadsheet-compatible applications. - Handle: XLSX - Origin: caDSR - Value: XLSX - XML: - Code: '2581637' - Definition: Extensible Markup Language - Handle: XML - Origin: caDSR - Value: XML - YAML: - Code: '11426805' - Definition: A human-readable, tree-structured data-serialization language - often used to create configuration files. - Handle: YAML - Origin: caDSR - Value: YAML - 'Yes': - Code: '6594241' - Definition: The affirmative response to a question. - Handle: 'Yes' - Origin: caDSR - Value: 'Yes' - ZIP: - Code: '11426806' - Definition: An archive file format that supports lossless data compression. - It is used to compress one or more files together into a single location. - Handle: ZIP - Origin: caDSR - Value: ZIP - bedgraph: - Code: '11422001' - Definition: A format that allows display of continuous-valued data in track - format. This display type is useful for probability scores and transcriptome - data. - Handle: bedgraph - Origin: caDSR - Value: bedgraph - bigBed: - Code: '11422002' - Definition: A format for large sequence annotation tracks, similar to the - textual browser extensible data (BED) format. The annotated items can - be either simple or a linked collection of exons. - Handle: bigBed - Origin: caDSR - Value: bigBed - bigWig: - Code: '11422003' - Definition: A format for large sequence annotation tracks that consist of - a value for each sequence position, similar to the textual wiggle (WIG) - format. - Handle: bigWig - Origin: caDSR - Value: bigWig - gVCF: - Code: '14818706' - Definition: A text file format used for storing gene sequence variations. - It is a type of variant call format that has a record for all sites, whether - there is a variant call there or not. The format includes metrics of the - confidence that positions are actually non-variant vs. a factor of minimum - read-depth and genotype quality. - Handle: gVCF - Origin: caDSR - Value: gVCF - md5sum: - Code: '11475055' - Definition: A 32-character hexadecimal number that is computed on a file. - Handle: md5sum - Origin: caDSR - Value: md5sum - mtx: - Code: '14534322' - Definition: A format for the storage of numerical or pattern matrices in a - dense (array format) or sparse (coordinate format) representation. - Handle: mtx - Origin: caDSR - Value: mtx - mzIdentML: - Code: '14534321' - Definition: An exchange format for peptides and proteins identified from mass - spectra. - Handle: mzIdentML - Origin: caDSR - Value: mzIdentML - mzML: - Code: '11422142' - Definition: An open-source format for mass spectrometer output files that - was designed to be utilized and adapted as advances in mass spectrometry - technology proceed. This was standardized by the Human Proteome Organization - (HUPO)-Proteomics Standards Initiative (PSI) Mass Spectrometry Standards - (MSS) Working Group. - Handle: mzML - Origin: caDSR - Value: mzML - mzXML: - Code: '11422143' - Definition: An XML based common file format for mass spectrometry data. - Handle: mzXML - Origin: caDSR - Value: mzXML - sha1: - Code: '2929855' - Definition: An algorithm for computing a condensed representation of a message - or a data file that produces a 160-bit message digest. - Handle: sha1 - Origin: caDSR - Value: sha1 - sha256: - Code: '2929856' - Definition: An algorithm for computing a condensed representation of a message - or a data file that produces a 256-bit message digest. - Handle: sha256 - Origin: caDSR - Value: sha256 diff --git a/model-desc/dss-classification-scheme.yml b/model-desc/dss-classification-scheme.yml deleted file mode 100644 index a1051e6..0000000 --- a/model-desc/dss-classification-scheme.yml +++ /dev/null @@ -1,53 +0,0 @@ -Handle: DSS -Nodes: - administrative: - Props: - - data_file_checksum_type - - data_file_checksum_value - - data_file_compression_status - - data_file_description - - data_file_format - - data_file_name - - data_file_size - - principal_investigator_first_name - - principal_investigator_last_name - - principal_investigator_middle_name - - principal_investigator_orcid_id - - program_name - - program_short_name - - project_name - - project_short_name - - study_name - - study_short_name - demographics: - Props: - - ncbi_taxonomy_id - - subject_age_at_diagnosis - - subject_race - - subject_reported_ethnicity - - days_from_specimen_collection_to_initial_pathologic_diagnosis - diagnosis: - Props: - - icd_10_cm_disease_code - - icd_o_3_primary_site_code - - tumor_grade - molecular: - Props: - - hgnc_gene_identifier - specimen: - Props: - - days_from_specimen_collection_to_initial_pathologic_diagnosis - - days_from_diagnosis_to_specimen_collection - - days_from_first_subject_visit_to_specimen_collection - - days_from_first_treatment_to_specimen_collection - - days_from_initial_genomic_sequencing_to_specimen_collection - - days_from_recurrence_to_specimen_collection - - icd_o_3_morphology_code - - specimen_longest_dimension - - specimen_shortest_dimension - - uberon_specimen_anatomic_site_identifier - treatment: - Props: - - dicom_modality_type - - environmental_exposure_type -Relationships: [] diff --git a/model-desc/dss-props.yml b/model-desc/dss-props.yml deleted file mode 100644 index 79e387c..0000000 --- a/model-desc/dss-props.yml +++ /dev/null @@ -1,579 +0,0 @@ -PropDefinitions: - data_file_checksum_type: - Code: '11475057' - Desc: The method by which the file checksum was calculated. - Enum: - - md5sum - - sha1 - - sha256 - Term: - - Code: '11475057' - Origin: caDSR - Value: Data File Checksum Type - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11475057%20and%20ver_nr=1 - data_file_checksum_value: - Code: '11480133' - Desc: A small-sized block of data derived from a file for the purpose of detecting - errors that may have been introduced during file transmission and/or storage - and used to verify data integrity. - Term: - - Code: '11480133' - Origin: caDSR - Value: Data File Checksum Value - Type: string - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11480133%20and%20ver_nr=1 - data_file_compression_status: - Code: '11387114' - Desc: The state of data when saved to storage space or during data transmission. - Enum: - - Unknown - - Compressed - - Uncompressed - Term: - - Code: '11387114' - Origin: caDSR - Value: Data File Compression Status - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11387114%20and%20ver_nr=1 - data_file_description: - Code: '11280338' - Desc: A free text field that can be used to document the content and other details - about an electronic file that may not be captured elsewhere. - Term: - - Code: '11280338' - Origin: caDSR - Value: Data File Description - Type: string - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11280338%20and%20ver_nr=1 - data_file_format: - Code: '11416926' - Desc: A defined organization or layout representing and structuring data in a - computer file. - Enum: - - ADF - - AVI - - BAI - - BAM - - BED - - bedgraph - - bigBed - - bigWig - - Binary Format - - BCR Biotab - - BIOM - - CRAM - - CSV - - DOCX - - DSV - - FASTA - - FASTQ - - GCT/Res Format - - DICOM - - GenBank Format - - GFF3 - - GPR - - GTF - - HDF5 - - HTML - - GZIP Format - - MAGE-TAB - - MAT - - MPEG-4 - - mzML - - mzXML - - NIFTI Format - - MATLAB Script - - OME-TIFF - - PDF - - Plain Text Data Format - - PNG - - R File Format - - R Markdown - - SDRF - - Sequence Record Format - - SVG - - Python Script Format - - SVS - - TAR - - Thermo RAW - - TSV - - TXT - - VCF - - XLS - - XLSX - - XML - - TIFF - - YAML - - ZIP - - IDAT - - IDF - - JPEG - - JPEG 2000 - - JSON - - MAF - - CEL - - CRAI - Term: - - Code: '11416926' - Origin: caDSR - Value: Data File Format - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11416926%20and%20ver_nr=1 - data_file_name: - Code: '11284037' - Desc: The literal label for an electronic data file. - Term: - - Code: '11284037' - Origin: caDSR - Value: Data File Name - Type: string - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11284037%20and%20ver_nr=1 - data_file_size: - Code: '11479876' - Desc: The measure (in bytes) of how much space a data file takes up on a storage - medium. - Term: - - Code: '11479876' - Origin: caDSR - Value: Data File Size - Type: integer - Units: bytes - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11479876%20and%20ver_nr=1 - days_from_diagnosis_to_specimen_collection: - Code: '11248865' - Desc: The number of days from the date the diagnosis was made to the date a sample - was collected. - Term: - - Code: '11248865' - Origin: caDSR - Value: Days from Diagnosis to Specimen Collection - Type: integer - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11248865%20and%20ver_nr=1 - days_from_first_subject_visit_to_specimen_collection: - Code: '11248874' - Desc: The number of days from the date the subject first visited to the date a - sample was collected. - Term: - - Code: '11248874' - Origin: caDSR - Value: Days from First Subject Visit to Specimen Collection - Type: integer - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11248874%20and%20ver_nr=1 - days_from_first_treatment_to_specimen_collection: - Code: '11250807' - Desc: The number of days from the date the first treatment was administered to - the date a sample was collected. - Term: - - Code: '11250807' - Origin: caDSR - Value: Days from First Treatment to Specimen Collection - Type: integer - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11250807%20and%20ver_nr=1 - days_from_initial_genomic_sequencing_to_specimen_collection: - Code: '11251130' - Desc: The number of days from the date the initial genomic sequencing was done - to the date a sample was collected. - Term: - - Code: '11251130' - Origin: caDSR - Value: Days from Initial Genomic Sequencing to Specimen Collection - Type: integer - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11251130%20and%20ver_nr=1 - days_from_recurrence_to_specimen_collection: - Code: '11251133' - Desc: The number of days from the date the disease recurrence was identified to - the date a sample was collected. - Term: - - Code: '11251133' - Origin: caDSR - Value: Days from Recurrence to Specimen Collection - Type: integer - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11251133%20and%20ver_nr=1 - days_from_specimen_collection_to_initial_pathologic_diagnosis: - Code: '11253404' - Desc: The number of days from the date a sample was collected to the date of the - initial pathologic diagnosis. - Term: - - Code: '11253404' - Origin: caDSR - Value: Days from Specimen Collection to Initial Pathologic Diagnosis - Type: integer - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11253404%20and%20ver_nr=1 - dicom_modality_type: - Code: '12137353' - Desc: A system of categories for representing a specific manner, characteristic, - pattern of a data acquisition device used in an imaging event whether physical - or electronic. - Enum: - - OP - - OT - - PR - - PT - - PX - - RF - - RG - - RTDOSE - - RTIMAGE - - RTPLAN - - RTRECORD - - RTSTRUCT - - SM - - SMR - - SR - - ST - - TG - - BI - - AS - - AU - - CD - - CF - - CP - - CR - - US - - VF - - XA - - XC - - CS - - CT - - DD - - DF - - DG - - DM - - DS - - DX - - EC - - EPS - - ES - - FA - - FS - - GM - - HC - - HD - - IO - - IVUS - - KO - - LP - - LS - - MA - - MG - - MR - - MS - - AR - - ASMT - - BDUS - - BMD - - CTPROTOCOL - - DMS - - DOC - - EEG - - EMG - - EOG - - FID - - IOL - - IVOCT - - KER - - LEN - - M3D - - OAM - - OCT - - OPM - - OPT - - OPTBSV - - OPTENF - - OPV - - OSS - - PLAN - - POS - - REG - - RESP - - RWV - - SEG - - SRF - - STAIN - - TEXTUREMAP - - VA - - ECG - - NM - Term: - - Code: '12137353' - Origin: caDSR - Value: DICOM Modality Type - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=12137353%20and%20ver_nr=1 - environmental_exposure_type: - Code: '11256813' - Desc: The category related to contact with chemical, biological, or physical substances - found in air, water, food, soil, or product that may have a harmful effect on - a person's health. - Enum: - - Tobacco Related Exposure - - Asbestos Exposure - - Marijuana Smoke Exposure - - Respirable Crystalline Silica Exposure - - Radon Exposure - - Wood Dust Exposure - - Smoke Exposure - - Chemical Exposure - - Radiation Exposure - - Smokeless Tobacco Exposure - Term: - - Code: '11256813' - Origin: caDSR - Value: Environmental Exposure Type - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11256813%20and%20ver_nr=1 - hgnc_gene_identifier: - Code: '12461467' - Desc: The unique numerical identifier for a particular gene assigned by the HGNC - (HUGO Gene Nomenclature Committee - an organism specific nomenclature committee). - Enum: - - HGNC (By Reference) - Term: - - Code: '12461467' - Origin: caDSR - Value: HGNC Gene Identifier - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=12461467%20and%20ver_nr=1 - icd_10_cm_disease_code: - Code: '11479873' - Desc: An alphanumeric value from the tenth version of the International Classification - of Disease (ICD-10-CM, the disease code subset of ICD-10) used to identify the - diagnosis in humans. - Enum: - - ICD-10-CM (By Reference) - Term: - - Code: '11479873' - Origin: caDSR - Value: ICD-10-CM Disease Code - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11479873%20and%20ver_nr=1 - icd_o_3_morphology_code: - Code: '11326261' - Desc: The microscopic anatomy of normal and abnormal cells and tissues of the - specimen as captured in the morphology codes of the International Classification - of Diseases for Oncology, 3rd Edition (ICD-O-3). Example - 8010/0 - Enum: - - ICD-O-3 (By Reference) - Term: - - Code: '11326261' - Origin: caDSR - Value: ICD-O-3 Morphology Code - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11326261%20and%20ver_nr=1 - icd_o_3_primary_site_code: - Code: '11341616' - Desc: The organ or part of the body where cancer begins as captured by the topography - codes of the International Classification of Diseases for Oncology, 3rd Edition - (ICD-O-3). - Enum: - - ICD-O-3 (By Reference) - Term: - - Code: '11341616' - Origin: caDSR - Value: ICD-O-3 Primary Site Code - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11341616%20and%20ver_nr=1 - ncbi_taxonomy_id: - Code: '10543100' - Desc: The unique numerical identifier of a subject's organismal classification - as defined in the National Center for Biotechnology Information (NCBI) Taxonomy - standard nomenclature and classification repository. - Term: - - Code: '10543100' - Origin: caDSR - Value: NCBI Taxonomy ID - Type: integer - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=10543100%20and%20ver_nr=1 - principal_investigator_first_name: - Code: '10624731' - Desc: The first or given name of the person responsible for the conduct of the - clinical trial or research project. - Term: - - Code: '10624731' - Origin: caDSR - Value: Principal Investigator First Name - Type: string - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=10624731%20and%20ver_nr=1 - principal_investigator_last_name: - Code: '10624733' - Desc: The last or family name of the person responsible for the conduct of the - clinical trial or research project. - Term: - - Code: '10624733' - Origin: caDSR - Value: Principal Investigator Last Name - Type: string - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=10624733%20and%20ver_nr=1 - principal_investigator_middle_name: - Code: '10624732' - Desc: The middle name of the person responsible for the conduct of the clinical - trial or research project. - Term: - - Code: '10624732' - Origin: caDSR - Value: Principal Investigator Middle Name - Type: string - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=10624732%20and%20ver_nr=1 - principal_investigator_orcid_id: - Code: '10624734' - Desc: A persistent unique digital identifier assigned to a principal investigator - by the Open Researcher and Contributor ID (ORCID) organization."" - Term: - - Code: '10624734' - Origin: caDSR - Value: Principal Investigator ORCID ID - Type: string - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=10624734%20and%20ver_nr=1 - program_name: - Code: '11444542' - Desc: The narrative title used to refer to a broad framework (an administrative - umbrella) of goals under which related projects or other research activities - are grouped. Example - Clinical Proteomic Tumor Analysis Consortium - Term: - - Code: '11444542' - Origin: caDSR - Value: Program Name - Type: string - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11444542%20and%20ver_nr=1 - program_short_name: - Code: '11459801' - Desc: An acronym or abbreviated form of the title of a broad framework of goals - under which related projects or other research activities are grouped. Example - - CPTAC - Term: - - Code: '11459801' - Origin: caDSR - Value: Program Short Name - Type: string - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11459801%20and%20ver_nr=1 - project_name: - Code: '11459804' - Desc: The narrative title used to refer to an organ-, site-, disease- or phase-specific - data collection within a broad framework of goals under which related studies - or other research activities are grouped. - Term: - - Code: '11459804' - Origin: caDSR - Value: Project Name - Type: string - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11459804%20and%20ver_nr=1 - project_short_name: - Code: '11459806' - Desc: An acronym or abbreviated form of the title used to refer to an organ-, - site- or disease-specific data collection within a broad framework of goals - under which related studies or other research activities are grouped. - Term: - - Code: '11459806' - Origin: caDSR - Value: Project Short Name - Type: string - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11459806%20and%20ver_nr=1 - specimen_longest_dimension: - Code: '5432602' - Desc: Numeric value that represents the longest dimension of the sample, measured - in millimeters. - Term: - - Code: '5432602' - Origin: caDSR - Value: Specimen Longest Dimension - Type: integer - Units: millimeters - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=5432602%20and%20ver_nr=1 - specimen_shortest_dimension: - Code: '5432603' - Desc: Numeric value that represents the shortest dimension of the sample, measured - in millimeters. - Term: - - Code: '5432603' - Origin: caDSR - Value: Specimen Shortest Dimension - Type: integer - Units: millimeters - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=5432603%20and%20ver_nr=1 - study_name: - Code: '11459810' - Desc: The narrative title used as a textual label for a research data collection. - Example - Comparative Molecular Life History of Spontaneous Canine and Human - Gliomas - Term: - - Code: '11459810' - Origin: caDSR - Value: Study Name - Type: string - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11459810%20and%20ver_nr=1 - study_short_name: - Code: '11459812' - Desc: The acronym or abbreviated form of the title for a research data collection. - Example – GLIOMA01 - Term: - - Code: '11459812' - Origin: caDSR - Value: Study Short Name - Type: string - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11459812%20and%20ver_nr=1 - subject_age_at_diagnosis: - Code: '10609539' - Desc: Age at the time of diagnosis expressed in number of days since birth. - Term: - - Code: '10609539' - Origin: caDSR - Value: Subject Age At Diagnosis - Type: integer - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=10609539%20and%20ver_nr=1 - subject_race: - Code: '2192199' - Desc: The text for reporting information about race based on the Office of Management - and Budget (OMB) categories. - Enum: - - Not Reported - - American Indian or Alaska Native - - Native Hawaiian or other Pacific Islander - - Unknown - - Asian - - White - - Black or African American - - Not allowed to collect - Term: - - Code: '2192199' - Origin: caDSR - Value: Subject Race - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=2192199%20and%20ver_nr=1 - subject_reported_ethnicity: - Code: '2192217' - Desc: The text for reporting information about ethnicity based on the Office of - Management and Budget (OMB) categories. - Enum: - - Hispanic or Latino - - Not Hispanic or Latino - - Not allowed to collect - - Not reported - - Unknown - Term: - - Code: '2192217' - Origin: caDSR - Value: Subject Reported Ethnicity - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=2192217%20and%20ver_nr=1 - tumor_grade: - Code: '11325685' - Desc: A text term to express the degree of abnormality of cancer cells as a measure - of differentiation and aggressiveness. - Enum: - - G1 - - G2 - - G3 - - GX - - High Grade - - Intermediate Grade - - Low Grade - - Not Applicable - - G4 - - GB - - Not Reported - Term: - - Code: '11325685' - Origin: caDSR - Value: Tumor Grade - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11325685%20and%20ver_nr=1 - uberon_specimen_anatomic_site_identifier: - Code: '12083894' - Desc: The location within the body from which a specimen was originally obtained - as captured in the Uberon identifier. - Enum: - - Uberon (By Reference) - Term: - - Code: '12083894' - Origin: caDSR - Value: Uberon Specimen Anatomic Site Identifier - Url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=12083894%20and%20ver_nr=1 diff --git a/model-desc/dss-terms.yml b/model-desc/dss-terms.yml deleted file mode 100644 index be19904..0000000 --- a/model-desc/dss-terms.yml +++ /dev/null @@ -1,1409 +0,0 @@ -Terms: - adf: - Code: 11421996 - Definition: A tab-delimited file defining how each array in an investigation is - used. This data includes what sequence is located at each position in an array - and what the annotation of this sequence is; cross-references to entries in - a public repository can be used if available. - Origin: caDSR - Value: ADF - Version: '1' - american_indian_or_alaska_native: - Code: 2572232 - Definition: A person having origins in any of the original peoples of North and - South America (including Central America) and who maintains tribal affiliation - or community attachment. (OMB) - Origin: caDSR - Value: American Indian or Alaska Native - Version: '1' - ar: - Code: 7552086 - Definition: An eye examination method in which a computer-controlled electronic - optometer is used to automatically measure refractive error. - Origin: caDSR - Value: AR - Version: '1' - as: - Code: 2582158 - Definition: The use of an angioscope to view the interior of a blood vessel. - Origin: caDSR - Value: AS - Version: '1' - asbestos_exposure: - Code: 6608022 - Definition: Inhalation of asbestos fibers. - Origin: caDSR - Value: Asbestos Exposure - Version: '1' - asian: - Code: 2572233 - Definition: A person having origins in any of the original peoples of the Far - East, Southeast Asia, or the Indian subcontinent, including for example, Cambodia, - China, India, Japan, Korea, Malaysia, Pakistan, the Philippine Islands, Thailand, - and Vietnam. (OMB) - Origin: caDSR - Value: Asian - Version: '1' - asmt: - Code: 12057185 - Definition: The results of an assessment or the content of one or more standard - operating procedures (SOP) instance(s). - Origin: caDSR - Value: ASMT - Version: '1' - au: - Code: 2582145 - Definition: The process of recording sound to a storage device. - Origin: caDSR - Value: AU - Version: '1' - avi: - Code: 11421997 - Definition: A multimedia container format for audio video interleaved (AVI) files - that allows for synchronous audio-with-video playback. - Origin: caDSR - Value: AVI - Version: '1' - bai: - Code: 11421998 - Definition: An index file found in the same directory as the binary alignment - map (BAM) file, a compressed binary version of a sequence alignment/map (SAM) - file. - Origin: caDSR - Value: BAI - Version: '1' - bam: - Code: 6356231 - Definition: A binary representation of a sequence alignment map (SAM), a compact - and indexable representation of nucleotide sequence alignments, compressed by - the BGZF (Blocked GNU Zip Format) library. - Origin: caDSR - Value: BAM - Version: '1' - bcr_biotab: - Code: 11421999 - Definition: Files that consist of aggregate clinical and biospecimen data across - all cases of the given project. Biotab files are supplemental files that are - available in the Genomic Data Commons (GDC) Legacy Archive as tab-delimited - files on a project level basis. These may also include fields that are not available - in the GDC application programming interface (API). - Origin: caDSR - Value: BCR Biotab - Version: '1' - bdus: - Code: 12057439 - Definition: The use of quantitative ultrasound for estimating bone mineral density - status of the peripheral skeleton, usually done at the heel. - Origin: caDSR - Value: BDUS - Version: '1' - bed: - Code: 11422000 - Definition: A tab-delimited text file format that allows the specification of - the sequence data that is displayed in an annotation track. The minimum required - information is chromosome, start position, and end position. - Origin: caDSR - Value: BED - Version: '1' - bedgraph: - Code: 11422001 - Definition: A format that allows display of continuous-valued data in track format. - This display type is useful for probability scores and transcriptome data. - Origin: caDSR - Value: bedgraph - Version: '1' - bi: - Code: 2582121 - Definition: An imaging technique that use non-invasive measurements to map biologically-generated - magnetic fields. - Origin: caDSR - Value: BI - Version: '1' - bigbed: - Code: 11422002 - Definition: A format for large sequence annotation tracks, similar to the textual - browser extensible data (BED) format. The annotated items can be either simple - or a linked collection of exons. - Origin: caDSR - Value: bigBed - Version: '1' - bigwig: - Code: 11422003 - Definition: A format for large sequence annotation tracks that consist of a value - for each sequence position, similar to the textual wiggle (WIG) format. - Origin: caDSR - Value: bigWig - Version: '1' - binary_format: - Code: 11422004 - Definition: A file format in which file information is stored in the form of ones - and zeros. It can be easily converted to text representations for visualization - and editing. - Origin: caDSR - Value: Binary Format - Version: '1' - biom: - Code: 11422059 - Definition: A general-use format for representing biological sample by observation - contingency tables. It is designed for general use in broad areas of comparative - -omics. The primary use of this format is to represent operational taxonomic - unit (OTU) and metagenome tables. - Origin: caDSR - Value: BIOM - Version: '1' - black_or_african_american: - Code: 2572313 - Definition: A person having origins in any of the Black racial groups of Africa. - Terms such as "Haitian" or "Negro" can be used in addition to "Black or African - American". (OMB) - Origin: caDSR - Value: Black or African American - Version: '1' - bmd: - Code: 12057440 - Definition: Any method used to measure bone mineral content and density. - Origin: caDSR - Value: BMD - Version: '1' - cd: - Code: 2582122 - Definition: The use of pulsed ultrasound to visualize blood flow through blood - vessels. Flow direction and speed are shown in differing colors. - Origin: caDSR - Value: CD - Version: '1' - cel: - Code: 12135194 - Definition: A type of file that stores the results of intensity calculations of - pixel values for DNA microarray image analysis. The data includes an intensity - value, standard deviation of the intensity, the number of pixels used to calculate - the intensity value, a flag to indicate an outlier as calculated by the algorithm, - and a user defined flag indicating whether the feature should be excluded from - future analysis. The file also stores the previously stated data for each feature - on the probe array. - Origin: caDSR - Value: CEL - Version: '1' - cf: - Code: 2582155 - Definition: Cinefluorography (retired) - Origin: caDSR - Value: CF - Version: '1' - chemical_exposure: - Code: 4394583 - Definition: No Value Exists - Origin: caDSR - Value: Chemical Exposure - Version: '1' - compressed: - Code: 11480563 - Definition: A file containing data that is in a compressed state. - Origin: caDSR - Value: Compressed - Version: '1' - cp: - Code: 2582160 - Definition: Endoscopic examination of the uterine cervix and vagina. - Origin: caDSR - Value: CP - Version: '1' - cr: - Code: 2582119 - Definition: X-ray imaging that replaces film with a phosphor imaging plate to - create a digital image. - Origin: caDSR - Value: CR - Version: '1' - crai: - Code: 12517496 - Definition: An external index file created by the sequencing data archive alongside - a compressed reference-oriented alignment map (CRAM) file. This index file is - available in the same directory as the CRAM file and is required for selective - access to the genomic sequence alignment data within the CRAM file. - Origin: caDSR - Value: CRAI - Version: '1' - cram: - Code: 11422061 - Definition: A more highly compressed alternative to the BAM and SAM DNA sequence - alignment file formats. It uses reference based compression, with only base - calls that differ from a designated reference sequence being stored. - Origin: caDSR - Value: CRAM - Version: '1' - cs: - Code: 2569349 - Definition: Endoscopic examination of the urinary bladder or urethra. - Origin: caDSR - Value: CS - Version: '1' - csv: - Code: 7797849 - Definition: A text file format that separates data elements with commas. - Origin: caDSR - Value: CSV - Version: '1' - ct: - Code: 2575842 - Definition: A method of examining body organs by scanning them with X rays and - using a computer to construct a series of cross-sectional scans along a single - axis. - Origin: caDSR - Value: CT - Version: '1' - ctprotocol: - Code: 12057441 - Definition: The rules and procedures for computed tomography acquisition. - Origin: caDSR - Value: CTPROTOCOL - Version: '1' - dd: - Code: 2582123 - Definition: An ultrasound technique that uses a B-mode transducer to visualize - blood flow and a Doppler probe to assess velocity and direction of the blood - flow. - Origin: caDSR - Value: DD - Version: '1' - df: - Code: 2582156 - Definition: Digital fluoroscopy (retired) - Origin: caDSR - Value: DF - Version: '1' - dg: - Code: 2582124 - Definition: Examination of a body part by transillumination. - Origin: caDSR - Value: DG - Version: '1' - dicom: - Code: 2967848 - Definition: A comprehensive set of standards for communications between medical - imaging devices, including handling, storing and transmitting information in - medical imaging. It includes a file format definition and a network communication - protocol. - Origin: caDSR - Value: DICOM - Version: '1' - dm: - Code: 2582161 - Definition: Microscopy that uses a digital camera instead of eyepieces. The microscope - is connected to a computer monitor and images are obtained in real time. - Origin: caDSR - Value: DM - Version: '1' - dms: - Code: 12057442 - Definition: A noninvasive diagnostic procedure that allows for in vivo microscopic - examination of the epidermis, the dermoepidermal junction, and the papillary - dermis. This aids in the identification of specific diagnostic patterns related - to color and cell structure to aid in differentiating malignant and benign lesions. - Origin: caDSR - Value: DMS - Version: '1' - doc: - Code: 2929970 - Definition: An organized collection of records that describe a particular body - of data. - Origin: caDSR - Value: DOC - Version: '1' - docx: - Code: 11422062 - Definition: A file type that uses Open XML Document format to store data for Microsoft - Word and other compatible programs. - Origin: caDSR - Value: DOCX - Version: '1' - ds: - Code: 2582154 - Definition: Digital Subtraction Angiography (retired) - Origin: caDSR - Value: DS - Version: '1' - dsv: - Code: 11422063 - Definition: A delimiter-separated values file that contains plain text data divided - into rows and columns by a designated special character. - Origin: caDSR - Value: DSV - Version: '1' - dx: - Code: 2582137 - Definition: Acquisition or display of radiographic images using digital techniques. - Origin: caDSR - Value: DX - Version: '1' - ec: - Code: 2566518 - Definition: A procedure that uses ultrasonic waves directed over the chest wall - to obtain a graphic record of the heart's position, motion of the walls, or - internal parts such as the valves. - Origin: caDSR - Value: EC - Version: '1' - ecg: - Code: 12060150 - Definition: A procedure that displays the electrical activity of the heart. - Origin: caDSR - Value: ECG - Version: '1' - eeg: - Code: 6401745 - Definition: The neurophysiologic exploration of the electrical activity of the - brain by the application of electrodes to the scalp. The resulting traces are - known as an electroencephalogram (EEG). This test is used to assess brain damage, - epilepsy and other problems. - Origin: caDSR - Value: EEG - Version: '1' - emg: - Code: 4821875 - Definition: An assessment of skeletal muscle function and nerve control, obtained - by recording and studying the intrinsic electrical properties of the muscles. - Origin: caDSR - Value: EMG - Version: '1' - eog: - Code: 12057566 - Definition: An electrophysiologic test that measures the standing potential between - the cornea and Bruch's membrane. Primary applications are in ophthalmological - diagnosis and in recording eye movements. - Origin: caDSR - Value: EOG - Version: '1' - eps: - Code: 2582147 - Definition: A cardiac procedure performed under fluoroscopy to determine the area - of the heart that is the source of aberrant electrical impulses that give rise - to arrhythmias. Aberrant pathways can be terminated by ablation. - Origin: caDSR - Value: EPS - Version: '1' - es: - Code: 2558723 - Definition: (en-DAHS-ko-pee) The use of a thin, lighted tube (called an endoscope) - to examine the inside of the body. - Origin: caDSR - Value: ES - Version: '1' - fa: - Code: 2582159 - Definition: A diagnostic procedure that uses the fluorescence of fluorescein dye - to examine the blood flow in the choroid and retina. - Origin: caDSR - Value: FA - Version: '1' - fasta: - Code: 11422064 - Definition: A sequence in FASTA format consists of a single-line description, - followed by lines of sequence data. The first character of the description line - is a greater-than (">") symbol in the first column. Sequences are represented - in the standard IUB/IUPAC single letter amino acid and nucleic acid codes, with - a single hyphen or dash being used to represent a gap of indeterminate length; - in amino acid sequences asterix ("*") can represent a translation stop. - Origin: caDSR - Value: FASTA - Version: '1' - fid: - Code: 12057567 - Definition: A medical device placed on or inserted in an anatomic site for accurate - visualization of a particular area, prior to radiation treatment or surgery. - Examples include markers inserted in the prostate gland for visualization of - the site affected by cancer, prior to radiation therapy; markers taped to the - scalp prior to imaging in frameless stereotactic brain surgery; and femoral - and tibial pins used for spatial orientation in total knee replacement. - Origin: caDSR - Value: FID - Version: '1' - fs: - Code: 2582162 - Definition: A technique used to examine of the back (fundus) and other anatomical - structures of the eye with a magnifying instrument. - Origin: caDSR - Value: FS - Version: '1' - g1: - Code: 10987208 - Definition: Describes tumor cells that generally retain the appearance of normal - cells and tend to grow and spread at a slower rate than undifferentiated or - poorly differentiated tumor cells. - Origin: caDSR - Value: G1 - Version: '1' - g2: - Code: 4614616 - Definition: Describes tumor cells that have lost some of the appearance of normal - cells. They tend to grow and spread at a faster rate than well differentiated - tumor cells. - Origin: caDSR - Value: G2 - Version: '1' - g3: - Code: 5424651 - Definition: Describes tumor cells that generally have lost most of the appearance - of normal cells. They tend to grow and spread. - Origin: caDSR - Value: G3 - Version: '1' - g4: - Code: 5428031 - Definition: A term used to describe cells or tissues that do not have specialized - ("mature") structures or functions. Undifferentiated cancer cells often grow - and spread quickly. - Origin: caDSR - Value: G4 - Version: '1' - gb: - Code: 6050322 - Definition: A morphologic qualifier indicating that a neoplasm is of borderline - malignancy. - Origin: caDSR - Value: GB - Version: '1' - gct_res_format: - Code: 11422066 - Definition: A tab-delimited text file that contains gene expression data as a - column for each sample, a row for each gene, and an expression value for each - gene in each sample. RES differs from GCT by having labels for each gene's absent - (A) versus present (P) calls as generated by Affymetrix's GeneChip software. - Origin: caDSR - Value: GCT/Res Format - Version: '1' - genbank_format: - Code: 11422129 - Definition: A type of flat file format that allows for the storage of DNA or protein - sequences and annotations. It consists of an annotation section and a sequence - section. - Origin: caDSR - Value: GenBank Format - Version: '1' - gff3: - Code: 11422130 - Definition: A tab-separated format for sequence data. It uses one line per feature, - each containing 9 columns of data, plus optional track definition lines. - Origin: caDSR - Value: GFF3 - Version: '1' - gm: - Code: 2582141 - Definition: The use of various technologies to resolve the structure or features - of objects too small or fine to naturally be seen by eye. - Origin: caDSR - Value: GM - Version: '1' - gpr: - Code: 11422131 - Definition: A tab-delimited text file format developed by Axon Instruments and - used to export data from the microarray image analysis tool GenePix. - Origin: caDSR - Value: GPR - Version: '1' - gtf: - Code: 11422132 - Definition: A tab-delimited text format based on the general feature format (GFF) - but which also contains some additional information for each gene. - Origin: caDSR - Value: GTF - Version: '1' - gx: - Code: 10987209 - Definition: A morphologic qualifier indicating that the grade of a neoplasm cannot - be assessed. - Origin: caDSR - Value: GX - Version: '1' - gzip_format: - Code: 2929849 - Definition: A file format consisting of a 10-byte header containing a magic number, - a version number, and a timestamp, a Deflate-compressed body, and an 8-byte - footer containing a checksum and the length of the original uncompressed data. - Origin: caDSR - Value: GZIP Format - Version: '1' - hc: - Code: 2565699 - Definition: A physical, printed version of information from a computer. - Origin: caDSR - Value: HC - Version: '1' - hd: - Code: 2582148 - Definition: The analysis of hemodynamic pressure changes to obtain diagnostic - information about the function of the right and left ventricles during systole - and diastole. - Origin: caDSR - Value: HD - Version: '1' - hdf5: - Code: 11422133 - Definition: A hierarchical, filesystem-like data format that can store metadata - in the form of user-defined, named attributes, which are attached to groups - and datasets, and representations of images and tables built up using datasets, - groups and attributes. - Origin: caDSR - Value: HDF5 - Version: '1' - hgnc_by_reference: - Code: 12126009 - Definition: The worldwide authority that assigns standardized nomenclature to - human genes. The HUGO Gene Nomenclature Committee is responsible for approving - unique symbols and names for human loci, including protein coding genes, ncRNA - genes, and pseudogenes, to allow unambiguous scientific communication. It is - jointly funded by the US National Human Genome Research Institute (NHGRI) and - Wellcome (UK) and operates under the auspices of the Human Genome Organization - (HUGO). - Origin: caDSR - Value: HGNC (By Reference) - Version: '1' - high_grade: - Code: 3288211 - Definition: Used to describe tumor samples that exhibit poorly differentiated - or undifferentiated cells. They are generally expected to be fast growing and - aggressive. - Origin: caDSR - Value: High Grade - Version: '1' - hispanic_or_latino: - Code: 2581176 - Definition: A person of Cuban, Mexican, Puerto Rican, South or Central American, - or other Spanish culture or origin, regardless of race. The term, "Spanish origin," - can be used in addition to "Hispanic or Latino." (OMB) - Origin: caDSR - Value: Hispanic or Latino - Version: '1' - html: - Code: 11422134 - Definition: A standard markup language used to display content on a web page, - as specified by the World Wide Web Consortium (W3C). - Origin: caDSR - Value: HTML - Version: '1' - icd_10_cm_by_reference: - Code: 6356782 - Definition: An extension of the ICD-10 created by the U.S. National Center for - Health Statistics so that the system could be used to capture more morbidity - data. This extension included a section of procedure codes. - Origin: caDSR - Value: ICD-10-CM (By Reference) - Version: '1' - icd_o_3_by_reference: - Code: 12126010 - Definition: The third edition of the International Classification of Diseases - for Oncology, published in 2000, used principally in tumor and cancer registries - for coding the site (topography) and the histology (morphology) of neoplasms. - Origin: caDSR - Value: ICD-O-3 (By Reference) - Version: '1' - idat: - Code: 11495707 - Definition: A proprietary, encrypted XML-based, compressed electronic file format - from Illumina Inc. for storing genome-wide profiling data. The data contains - a summary of the intensity data generated from each probe used during a sequencing - run. - Origin: caDSR - Value: IDAT - Version: '1' - idf: - Code: 11422065 - Definition: A a tab-delimited containing information about an investigation, including - its name, a description, the investigator's contact details, bibliographic references, - and free text descriptions of any relevant protocols. - Origin: caDSR - Value: IDF - Version: '1' - intermediate_grade: - Code: 3335158 - Definition: A term referring to the degree of differentiation of a malignant neoplasm - and indicating that it is moderately differentiated. - Origin: caDSR - Value: Intermediate Grade - Version: '1' - io: - Code: 2582139 - Definition: Radiography done within the oral cavity. - Origin: caDSR - Value: IO - Version: '1' - iol: - Code: 12057568 - Definition: Calculations made to determine the required optical power for an intra-ocular - lens that will be implanted following cataract surgery. Its strength is a factor - of corneal refractive power, ocular media type, and axial length. - Origin: caDSR - Value: IOL - Version: '1' - ivoct: - Code: 12057569 - Definition: Optical coherence tomography used for imaging within blood vessels. - Origin: caDSR - Value: IVOCT - Version: '1' - ivus: - Code: 2582150 - Definition: An invasive procedure in which sound waves (called ultrasound) are - bounced off of vascular tissues from within the vessel and the echoes produce - a picture (sonogram). - Origin: caDSR - Value: IVUS - Version: '1' - jpeg: - Code: 11422138 - Definition: A file compression format mostly used for color and greyscale photographs. - Origin: caDSR - Value: JPEG - Version: '1' - jpeg_2000: - Code: 11422135 - Definition: A discrete wavelet transform (DWT)-based compression standard electronic - file format for storing video images. - Origin: caDSR - Value: JPEG 2000 - Version: '1' - json: - Code: 11422136 - Definition: A common open standard file format and data interchange format that - uses human-readable text consisting of attribute-value pairs and arrays to store - and transmit data. - Origin: caDSR - Value: JSON - Version: '1' - ker: - Code: 12057570 - Definition: The measurement of the curvature of the anterior corneal surface. - Origin: caDSR - Value: KER - Version: '1' - ko: - Code: 2582153 - Definition: Selection of a key image by the interpreting physician. - Origin: caDSR - Value: KO - Version: '1' - len: - Code: 12057571 - Definition: The use of a lensometer to determine the optical strength of eye glass - lenses. - Origin: caDSR - Value: LEN - Version: '1' - low_grade: - Code: 3288210 - Definition: Used to describe tumor samples that exhibit well to moderately well - differentiated cells. They are generally expected to be slow growing and less - aggressive. - Origin: caDSR - Value: Low Grade - Version: '1' - lp: - Code: 2559024 - Definition: (lap-a-RAHS-ko-pee) The insertion of a thin, lighted tube (called - a laparoscope) through the abdominal wall to inspect the inside of the abdomen - and remove tissue samples. - Origin: caDSR - Value: LP - Version: '1' - ls: - Code: 2582125 - Definition: A method for obtaining information about the surface morphology and - topology of an object. - Origin: caDSR - Value: LS - Version: '1' - m3d: - Code: 12057573 - Definition: A structural template used as the basis for manufacturing three dimensional - objects. - Origin: caDSR - Value: M3D - Version: '1' - ma: - Code: 2582163 - Definition: An image of blood vessels constructed using magnetic resonance imaging. - Origin: caDSR - Value: MA - Version: '1' - maf: - Code: 11422137 - Definition: A tab-delimited text file containing mutation information aggregated - from variant call files (VCF) across a project, trial or study. - Origin: caDSR - Value: MAF - Version: '1' - mage_tab: - Code: 2953599 - Definition: A tab-delimited, spreadsheet-based format that can be used for annotating - and communicating microarray data in a MIAME (Minimum Information About a Microarray - Experiment) compliant fashion. - Origin: caDSR - Value: MAGE-TAB - Version: '1' - marijuana_smoke_exposure: - Code: 11167651 - Definition: Environmental, occupational or consumer-based exposure to airborne - gases and particulates produced by direct or nearby use of a vaporized or combusted - product made from the leaves and flowers of the cannabis plant. - Origin: caDSR - Value: Marijuana Smoke Exposure - Version: '1' - mat: - Code: 11422139 - Definition: A proprietary, binary data container format used by MATLAB software - to store workspace variables. - Origin: caDSR - Value: MAT - Version: '1' - matlab_script: - Code: 11422140 - Definition: A file that contains MATLAB commands and function calls. - Origin: caDSR - Value: MATLAB Script - Version: '1' - md5sum: - Code: 11475055 - Definition: A 32-character hexadecimal number that is computed on a file. - Origin: caDSR - Value: md5sum - Version: '1' - mg: - Code: 2582138 - Definition: Imaging examination of the breast by means of x-rays. - Origin: caDSR - Value: MG - Version: '1' - mpeg_4: - Code: 11422141 - Definition: A multimedia file that is commonly used to store video and audio data. - Origin: caDSR - Value: MPEG-4 - Version: '1' - mr: - Code: 2582120 - Definition: Imaging that uses radiofrequency waves and a strong magnetic field - rather than x-rays to provide detailed pictures of internal organs and tissues. - The technique is valuable for the diagnosis of many pathologic conditions, including - cancer, heart and vascular disease, stroke, and joint and musculoskeletal disorders. - Origin: caDSR - Value: MR - Version: '1' - ms: - Code: 2576333 - Definition: Magnetic Resonance Spectroscopy - Origin: caDSR - Value: MS - Version: '1' - mzml: - Code: 11422142 - Definition: An open-source format for mass spectrometer output files that was - designed to be utilized and adapted as advances in mass spectrometry technology - proceed. This was standardized by the Human Proteome Organization (HUPO)-Proteomics - Standards Initiative (PSI) Mass Spectrometry Standards (MSS) Working Group. - Origin: caDSR - Value: mzML - Version: '1' - mzxml: - Code: 11422143 - Definition: An XML based common file format for mass spectrometry data. - Origin: caDSR - Value: mzXML - Version: '1' - native_hawaiian_or_other_pacific_islander: - Code: 2572235 - Definition: Denotes a person having origins in any of the original peoples of - Hawaii, Guam, Samoa, or other Pacific Islands. The term covers particularly - people who identify themselves as part-Hawaiian, Native Hawaiian, Guamanian - or Chamorro, Carolinian, Samoan, Chuukese (Trukese), Fijian, Kosraean, Melanesian, - Micronesian, Northern Mariana Islander, Palauan, Papua New Guinean, Pohnpeian, - Polynesian, Solomon Islander, Tahitian, Tokelauan, Tongan, Yapese, or Pacific - Islander, not specified. - Origin: caDSR - Value: Native Hawaiian or other Pacific Islander - Version: '1' - nifti_format: - Code: 11422144 - Definition: An open file format used to store neuroscience and neuroradiology - imaging data obtained by MRI. The raw image data in NIfTI is saved as a 3d image. - Origin: caDSR - Value: NIFTI Format - Version: '1' - nm: - Code: 12103506 - Definition: An imaging technique that uses a small dose of a radioactive chemical - (isotope) called a tracer that can detect sites of cancer growth, trauma, infection - or degenerative disorders. The tracer, which is either injected into a vein - or swallowed, travels through the bloodstream to the target organ, and emits - gamma rays, which are detected by a gamma camera and analyzed by a computer - to form an image of the target organ. - Origin: caDSR - Value: NM - Version: '1' - not_allowed_to_collect: - Code: 6662191 - Definition: An indicator that specifies that a collection event was not permitted. - Origin: caDSR - Value: Not allowed to collect - Version: '1' - not_applicable: - Code: 7590024 - Definition: Determination of a value is not relevant in the current context. - Origin: caDSR - Value: Not Applicable - Version: '1' - not_hispanic_or_latino: - Code: 2567110 - Definition: A person not of Cuban, Mexican, Puerto Rican, South or Central American, - or other Spanish culture or origin, regardless of race. - Origin: caDSR - Value: Not Hispanic or Latino - Version: '1' - not_reported: - Code: 2572578 - Definition: Not provided or available. - Origin: caDSR - Value: Not Reported - Version: '1' - oam: - Code: 12057574 - Definition: A method for determining the axial length of the eye. - Origin: caDSR - Value: OAM - Version: '1' - oct: - Code: 6413980 - Definition: Optical Coherence Tomography (OCT) combines the principles of ultrasound - with the imaging performance of a microscope. OCT uses infrared light waves - that reflect off the internal microstructure within the biological tissues. - The frequencies and bandwidths of infrared light are orders of magnitude higher - than medical ultrasound signals, resulting in greatly increased image resolution, - 8-25 times greater than any existing modality. In addition to providing high-level - resolutions for the evaluation of microanatomic structures OCT is also able - to provide information regarding tissue composition. - Origin: caDSR - Value: OCT - Version: '1' - ome_tiff: - Code: 11422196 - Definition: A tagged image file format (TIFF) image file format that contains - an Open Microscopy Environment (OME) XML metadata block in the file header for - storing microscopy information (pixels and metadata) using the OME Data Model. - Origin: caDSR - Value: OME-TIFF - Version: '1' - op: - Code: 2582151 - Definition: Photography used to study and document structures and disorders of - the eye. - Origin: caDSR - Value: OP - Version: '1' - opm: - Code: 12057575 - Definition: Methods for determining the topography or thickness of parts of the - eye. - Origin: caDSR - Value: OPM - Version: '1' - opt: - Code: 12057576 - Definition: The use of optical coherence tomography to obtain images of the eye. - Origin: caDSR - Value: OPT - Version: '1' - optbsv: - Code: 12057577 - Definition: An assessment of ocular anatomy as well as any lesions that may be - present within the eye that utilizes optical coherence tomography at frequencies - of 10 MHz or higher. - Origin: caDSR - Value: OPTBSV - Version: '1' - optenf: - Code: 12057578 - Definition: An imaging technique that combines spectral-domain optical coherence - tomography with transverse confocal analysis, producing transverse images of - retinal and choroidal layers at a specified depth. - Origin: caDSR - Value: OPTENF - Version: '1' - opv: - Code: 7463355 - Definition: An eye examination technique that utilizes test objects with gradually - increasing luminance that are positioned at fixed locations across the visual - field to determine the threshold of visibility. - Origin: caDSR - Value: OPV - Version: '1' - oss: - Code: 12057579 - Definition: A device designed for continuous and touchless optical surface scanning - of a patient's external surfaces for accurate patient positioning. - Origin: caDSR - Value: OSS - Version: '1' - ot: - Code: 2559653 - Definition: Different than the one(s) previously specified or mentioned. - Origin: caDSR - Value: OT - Version: '1' - pdf: - Code: 2967828 - Definition: An open file format created and controlled by Adobe Systems, for representing - two-dimensional documents in a device independent and resolution independent - fixed-layout document format. Each PDF file encapsulates a complete description - of a 2D document that includes the text, fonts, images, and 2D vector graphics - that compose the document. PDF files do not encode information that is specific - to the application software, hardware, or operating system used to create or - view the document. This feature ensures that a valid PDF will render exactly - the same regardless of its origin or destination (but depending on font availability - when fonts are not encapsulated in the file). - Origin: caDSR - Value: PDF - Version: '1' - plan: - Code: 2571012 - Definition: Planned; devised, contrived, or formed in design. - Origin: caDSR - Value: PLAN - Version: '1' - png: - Code: 11422198 - Definition: An extensible file format for lossless data compression of images. - Origin: caDSR - Value: PNG - Version: '1' - pos: - Code: 12057580 - Definition: A sensor designed to measure the location or orientation of a person - as compared to a reference point. - Origin: caDSR - Value: POS - Version: '1' - pr: - Code: 2582144 - Definition: An independent DICOM SOP Instance that contains information on how - a particular image should be displayed. The Presentation State may contain label - information (types of Label and Positions), windowing values, zoom value, scrolling - (panning) values, rotations or any other visual display element that is defined - within the DICOM standard. - Origin: caDSR - Value: PR - Version: '1' - pt: - Code: 2581621 - Definition: A technique for measuring the gamma radiation produced by collisions - of electrons and positrons (anti-electrons) within living tissue. In positron - emission tomography (PET), a subject is given a dose of a positron-emitting - radionuclide attached to a metabolically active substance (for example, 2-fluoro-2-deoxy-D-glucose - (FDG), which is similar to a naturally occurring sugar, glucose, with the addition - of a radioactive fluorine atom). When living tissue containing the positron - emitter is bombarded by electrons, gamma radiation produced by collisions of - electrons and positrons is detected by a scanner, revealing in fine detail the - tissue location of the metabolically-active substance administered. - Origin: caDSR - Value: PT - Version: '1' - px: - Code: 2582140 - Definition: A panoramic or wide-view x-ray of the upper and lower jaw and teeth. - Origin: caDSR - Value: PX - Version: '1' - python_script_format: - Code: 11422199 - Definition: A plain text file that stores python code. - Origin: caDSR - Value: Python Script Format - Version: '1' - r_file_format: - Code: 11422200 - Definition: A file format used for writing scripts in the R programming language - for execution within the R software environment, typically for statistical computation - and graphics. - Origin: caDSR - Value: R File Format - Version: '1' - r_markdown: - Code: 11422201 - Definition: A file format for making dynamic documents written in R. It is written - in plain text format and contains chunks of embedded R code. - Origin: caDSR - Value: R Markdown - Version: '1' - radiation_exposure: - Code: 6607858 - Definition: Exposure to radioactive materials or ionizing radiation, whether by - external irradiation, contact or contamination with radioactive material, or - incorporation of radioactive materials, as in the case of certain diagnostic - procedures. - Origin: caDSR - Value: Radiation Exposure - Version: '1' - radon_exposure: - Code: 11167653 - Definition: Inhalation of radon gas which is found in rocks, soil and groundwater - as a result of radioactive decay of uranium, thorium, or radium in the environment. - Origin: caDSR - Value: Radon Exposure - Version: '1' - reg: - Code: 12057582 - Definition: The process of transforming sets of image data from different times - or perspectives into one coordinate system. - Origin: caDSR - Value: REG - Version: '1' - resp: - Code: 12057587 - Definition: A graphical representation of the breathing pattern in a patient. - Origin: caDSR - Value: RESP - Version: '1' - respirable_crystalline_silica_exposure: - Code: 11167652 - Definition: Environmental, occupational or consumer-based exposure to respirable - particles derived from industrial processing or breakdown of silica-containing - materials such as sand, concrete, stone, mortar, bricks, glass, pottery and - ceramics. - Origin: caDSR - Value: Respirable Crystalline Silica Exposure - Version: '1' - rf: - Code: 2582130 - Definition: Examination of the tissues and deep structures of the body by x-ray, - using the fluoroscope, a device that produces an image when x-rays strike a - fluorescent screen. - Origin: caDSR - Value: RF - Version: '1' - rg: - Code: 2582126 - Definition: A radiographic procedure using the emission of x-rays to form an image - of the structure penetrated by the radiation. - Origin: caDSR - Value: RG - Version: '1' - rtdose: - Code: 2582133 - Definition: The amount of radiation administered during a therapy session. - Origin: caDSR - Value: RTDOSE - Version: '1' - rtimage: - Code: 2582132 - Definition: An image produced on a radiosensitive surface by x-ray radiation that - has penetrated and passed through a structure. - Origin: caDSR - Value: RTIMAGE - Version: '1' - rtplan: - Code: 2582135 - Definition: The design for radiation therapy. - Origin: caDSR - Value: RTPLAN - Version: '1' - rtrecord: - Code: 2582136 - Definition: A record generated from radiation therapy. - Origin: caDSR - Value: RTRECORD - Version: '1' - rtstruct: - Code: 2582134 - Definition: An object of the DICOM standard used for the transfer of patient structures - and related data defined on CT scanners, virtual simulation workstations, treatment - planning systems and similar devices. - Origin: caDSR - Value: RTSTRUCT - Version: '1' - rwv: - Code: 12057589 - Definition: The representation of the stored pixel values of referenced images - into some Real World value in defined units. This allows the capture of retrospectively - determined mappings, e.g., for values that cannot be determined at the time - of image acquisition and encoding. - Origin: caDSR - Value: RWV - Version: '1' - sdrf: - Code: 11422202 - Definition: A tab-delimited file describing the relationships between samples, - arrays, data and other objects used or produced during a microarray experiment. - Origin: caDSR - Value: SDRF - Version: '1' - seg: - Code: 2985472 - Definition: The process of assigning a label to every pixel in an image such that - pixels with the same label share certain visual characteristics, allowing the - image to be partitioned into multiple segments (e.g., boundaries, lines, curves). - Origin: caDSR - Value: SEG - Version: '1' - sequence_record_format: - Code: 11422203 - Definition: Any file format designed to store molecular sequence data. - Origin: caDSR - Value: Sequence Record Format - Version: '1' - sha1: - Code: 2929855 - Definition: An algorithm for computing a condensed representation of a message - or a data file that produces a 160-bit message digest. - Origin: caDSR - Value: sha1 - Version: '1' - sha256: - Code: 2929856 - Definition: An algorithm for computing a condensed representation of a message - or a data file that produces a 256-bit message digest. - Origin: caDSR - Value: sha256 - Version: '1' - sm: - Code: 2582142 - Definition: Microscopy that uses a sample affixed to a slide. - Origin: caDSR - Value: SM - Version: '1' - smoke_exposure: - Code: 11167655 - Definition: Environmental, occupational or consumer-based exposure to airborne - gases and particulates produced when materials undergo combustion or thermal - decomposition. - Origin: caDSR - Value: Smoke Exposure - Version: '1' - smokeless_tobacco_exposure: - Code: 11167688 - Definition: Environmental, occupational, or consumer-based exposure to any smokeless - tobacco product. - Origin: caDSR - Value: Smokeless Tobacco Exposure - Version: '1' - smr: - Code: 2582152 - Definition: Pairs of images that may be viewed together in stereo. - Origin: caDSR - Value: SMR - Version: '1' - sr: - Code: 2582149 - Definition: A document type consisting of a document header and a document body. - Origin: caDSR - Value: SR - Version: '1' - srf: - Code: 12057623 - Definition: A technique of determining the combination of spherical and cylindrical - lenses that will result in the best-corrected visual acuity. The process involves - the patient fixating at the Snellen Chart, while the clinician presents a variety - of lenses and alters the power of the lenses in the trial frames according to - the patient's subjective responses regarding improvements to their vision. - Origin: caDSR - Value: SRF - Version: '1' - st: - Code: 2582127 - Definition: A type of tomography in which gamma photon-emitting radionuclides - are administered to the patient and then detected by one or more gamma cameras - rotated around the patient. From the series of two-dimensional images produced, - a three-dimensional image can be created by computer reconstruction. - Origin: caDSR - Value: ST - Version: '1' - stain: - Code: 12057624 - Definition: An instrument designed to automate the process of staining specimens - affixed to slides. - Origin: caDSR - Value: STAIN - Version: '1' - svg: - Code: 11422204 - Definition: A specification for describing vector graphics using extensible markup - language. - Origin: caDSR - Value: SVG - Version: '1' - svs: - Code: 11426797 - Definition: An electronic file format based on TIFF that is used for storing multiple - high-resolution images in a single electronic file. - Origin: caDSR - Value: SVS - Version: '1' - tar: - Code: 11426798 - Definition: A file format generated by the Unix command-line utility tar (tape - archive). It is used for collecting many files into one archive file. - Origin: caDSR - Value: TAR - Version: '1' - texturemap: - Code: 12057625 - Definition: A two-dimensional image file that stores information describing surface - texture details across a specimen or image. - Origin: caDSR - Value: TEXTUREMAP - Version: '1' - tg: - Code: 2582128 - Definition: Computed tomography that describes temperature details across a surface. - Origin: caDSR - Value: TG - Version: '1' - thermo_raw: - Code: 11426799 - Definition: A proprietary file format developed by Thermo Scientific to capture - mass spectrometry data produced by Thermo mass spectrometers. - Origin: caDSR - Value: Thermo RAW - Version: '1' - tiff: - Code: 11426800 - Definition: A bitmap graphics file format utilizing tagged fields. - Origin: caDSR - Value: TIFF - Version: '1' - tobacco_related_exposure: - Code: 11167650 - Definition: Environmental, occupational or consumer-based exposure to airborne - gases and particulates produced by direct or nearby use of a vaporized or combusted - tobacco product. - Origin: caDSR - Value: Tobacco Related Exposure - Version: '1' - tsv: - Code: 11426801 - Definition: A file format where each line in the file contains a single piece - of data and where each field or value in a line of data is separated from the - next by a tab character. - Origin: caDSR - Value: TSV - Version: '1' - txt: - Code: 11422197 - Definition: A data format consisting of readable textual material maintained as - a sequential file. - Origin: caDSR - Value: TXT - Version: '1' - uberon_by_reference: - Code: 12126011 - Definition: An integrated cross-species anatomy ontology representing a variety - of entities classified according to traditional anatomical criteria such as - structure, function, and developmental lineage. The ontology includes comprehensive - relationships to taxon-specific anatomical ontologies, allowing integration - of functional, phenotype and expression data. - Origin: caDSR - Value: Uberon (By Reference) - Version: '1' - uncompressed: - Code: 11480564 - Definition: A file containing data that is in an uncompressed state. - Origin: caDSR - Value: Uncompressed - Version: '1' - unknown: - Code: 5682953 - Definition: Not known, not observed, not recorded, or refused. - Origin: caDSR - Value: Unknown - Version: '1' - us: - Code: 2580423 - Definition: A technique in which high-frequency sound waves are bounced off internal - organs and the echo pattern is converted into a 2 dimensional picture of the - structures beneath the transducer. - Origin: caDSR - Value: US - Version: '1' - va: - Code: 12057626 - Definition: Sharpness of vision, the ability to discern fine detail. - Origin: caDSR - Value: VA - Version: '1' - vcf: - Code: 11426802 - Definition: A text-based electronic file used for storing gene sequence variation - data. The first text section is composed of a header containing the metadata - and keywords used in the file. This is followed by the body of the file which - is tab-separated into eight mandatory data columns for each sample. Additionally, - the body of the file can include an unlimited number of optional columns to - record other sample-related data. - Origin: caDSR - Value: VCF - Version: '1' - vf: - Code: 2582157 - Definition: Videofluorography (retired) - Origin: caDSR - Value: VF - Version: '1' - white: - Code: 2572236 - Definition: Denotes person with European, Middle Eastern, or North African ancestral - origin who identifies, or is identified, as White. - Origin: caDSR - Value: White - Version: '1' - wood_dust_exposure: - Code: 11167654 - Definition: Environmental or occupational exposure to granular solids generated - when timber is processed, such as when it is chipped, sawed, turned, drilled - or sanded. - Origin: caDSR - Value: Wood Dust Exposure - Version: '1' - xa: - Code: 2582129 - Definition: The X-ray examination of the blood vessels or chambers of the heart. - Origin: caDSR - Value: XA - Version: '1' - xc: - Code: 2582143 - Definition: Photographic image acquisition using a camera mounted externally from - the subject. - Origin: caDSR - Value: XC - Version: '1' - xls: - Code: 11426803 - Definition: A proprietary binary file format used to store spreadsheet data in - Microsoft Excel. - Origin: caDSR - Value: XLS - Version: '1' - xlsx: - Code: 11426804 - Definition: A proprietary file format developed by Microsoft that allows the user - to save a spreadsheet created in Excel in an open XML-format. The file then - can be read and opened by other spreadsheet-compatible applications. - Origin: caDSR - Value: XLSX - Version: '1' - xml: - Code: 2581637 - Definition: Extensible Markup Language - Origin: caDSR - Value: XML - Version: '1' - yaml: - Code: 11426805 - Definition: A human-readable, tree-structured data-serialization language often - used to create configuration files. - Origin: caDSR - Value: YAML - Version: '1' - zip: - Code: 11426806 - Definition: An archive file format that supports lossless data compression. It - is used to compress one or more files together into a single location. - Origin: caDSR - Value: ZIP - Version: '1'