From 957623b1b9861be68eecb256a59027b18140bcbf Mon Sep 17 00:00:00 2001 From: Nezar Abdennur Date: Mon, 5 Apr 2021 14:25:22 -0400 Subject: [PATCH] Release candidate --- CHANGELOG.md | 17 ++++++++++++++++- cooltools/__init__.py | 2 +- requirements.txt | 2 +- 3 files changed, 18 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 3b8c56f4..2348909e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,6 +1,21 @@ # Release notes -## [Upcoming release](https://github.com/open2c/cooltools/compare/v0.3.2...HEAD) +## [Upcoming release](https://github.com/open2c/cooltools/compare/v0.4.0...HEAD) + +## [v0.4.0](https://github.com/open2c/cooltools/compare/v0.3.2...v0.4.0) + +Date: 2021-04-05 + +Maintenance +* Make saddle strength work with NaNs +* Add output option to diamond-insulation +* Upgrade bioframe dependency +* Parallelize random sampling +* Various compatibility fixes to expected, saddle and snipping and elsewhere to work with standard formats for "expected" and "regions": https://github.com/open2c/cooltools/issues/217 + +New features +* New dataset download API +* New functionality for smoothing P(s) and derivatives (API is not yet stable): `logbin_expected`, `interpolate_expected` ## [v0.3.2](https://github.com/open2c/cooltools/compare/v0.3.0...v0.3.2) diff --git a/cooltools/__init__.py b/cooltools/__init__.py index c388d16f..cd7ef205 100644 --- a/cooltools/__init__.py +++ b/cooltools/__init__.py @@ -11,7 +11,7 @@ """ import logging -__version__ = "0.4.0-dev" +__version__ = "0.4.0rc1" from . import io from . import lib diff --git a/requirements.txt b/requirements.txt index 95a12e9c..6be11b32 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,4 +1,4 @@ -bioframe>=0.1.0 +bioframe>=0.2.0 click>=7 cooler>=0.8.5 cython