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    35 repositories

    • PRIDICT2

      Public
      Python
      •
      MIT License
      •5•8•0•0•Updated Jan 10, 2025Jan 10, 2025

    • PRIDICT

      Public
      Prime editing guide RNA prediction
      crispr-cas9prime-editingmachine-learningdeep-learning
      Python
      •
      MIT License
      •5•7•0•0•Updated Jan 9, 2025Jan 9, 2025

    • eustar_dgm4h

      Public
      Jupyter Notebook
      •1•3•0•0•Updated Jan 9, 2025Jan 9, 2025

    • graphnn

      Public
      Jupyter Notebook
      •0•3•0•0•Updated Jan 9, 2025Jan 9, 2025

    • ARGON

      Public
      Progressive Transformer-Based Generation of Radiology Reports
      Python
      •2•25•2•0•Updated Jan 5, 2025Jan 5, 2025

    • lab-website

      Public
      TeX
      •
      MIT License
      •5•1•0•8•Updated Dec 6, 2024Dec 6, 2024

    • mridle

      Public
      Resource Optimization for Radiology
      Python
      •0•0•1•5•Updated Oct 23, 2024Oct 23, 2024

    • singularity_recipes

      Public
      Singularity image with toolbox for scRNA-seq analysis including some useful R packages
      R
      •
      MIT License
      •1•1•0•0•Updated Aug 29, 2024Aug 29, 2024

    • scqm

      Public
      Python
      •0•0•0•0•Updated Aug 29, 2024Aug 29, 2024

    • FrEIA

      Public
      Fragment End Integrated Analysis tool
      Python
      •
      MIT License
      •3•0•0•0•Updated Jul 30, 2024Jul 30, 2024

    • auto-discern

      Public
      Python
      •2•3•19•1•Updated Jul 25, 2024Jul 25, 2024

    • eustar_mlhc

      Public
      Semi-Supervised Generative Models for Disease Trajectories: A Case Study on Systemic Sclerosis
      Python
      •1•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • Tnpb

      Public
      Jupyter Notebook
      •
      Other
      •1•4•0•0•Updated Jul 11, 2024Jul 11, 2024

    • fragmentstein

      Public
      Create a BAM file out of insensitive fragments data (i.e. FinaleDB frag.tsv.bgz file) including sequences extracted from a reference genome.
      Shell
      •
      GNU General Public License v3.0
      •0•2•1•0•Updated Jul 4, 2024Jul 4, 2024

    • scRNA-slow_frozen

      Public
      scRNAseq scripts for the Live slow-frozen human tumor tissue paper
      R
      •
      MIT License
      •0•0•0•0•Updated Jul 1, 2024Jul 1, 2024

    • cfDNA-Flow

      Public
      A modular bioinformatics pipeline offering a range of preprocessing options for cell-free DNA (cfDNA) analysis.
      HTML
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jun 14, 2024Jun 14, 2024

    • DQBM-retreat-workshop

      Public
      Created for the DQBM Retreat 2022
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 27, 2024Feb 27, 2024

    • cfDNA-Flow_paper

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 23, 2024Jan 23, 2024

    • cfdna-radiooncology

      Public
      The scripts used for the paper
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 24, 2023Oct 24, 2023

    • healing_mnist

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 14, 2023Jun 14, 2023

    • Infusing_Prior

      Public
      Official code implementation of the paper <Boosting Radiology Report Generation by Infusing Comparison Prior>
      Python
      •0•2•1•0•Updated Jun 5, 2023Jun 5, 2023

    • SeqAlign

      Public
      Python
      •
      MIT License
      •2•1•1•0•Updated May 11, 2023May 11, 2023

    • fragmentstein-paper

      Public
      Scripts to reproduce the analysis presented in the Fragmentstein paper.
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 24, 2023Apr 24, 2023

    • cmi-website

      Public
      TeX
      •1•0•0•3•Updated Apr 11, 2023Apr 11, 2023

    • drug-prescriptions

      Public
      Supplementary Data for the "Drug prescription clusters in the UK Biobank" project
      0•1•0•0•Updated Dec 2, 2022Dec 2, 2022

    • NFC_VIT

      Public
      This is the implementation of the work described in the paper "Vision Transformer assisting rheumatologists in screening for capillaroscopy changes in systemic sclerosis: an artificial intelligence model"
      Python
      •
      MIT License
      •1•2•0•0•Updated Nov 23, 2022Nov 23, 2022

    • hcup_research

      Public
      Python
      •0•1•0•9•Updated Sep 30, 2022Sep 30, 2022

    • clusty

      Public
      CLI tools for launching / stopping batch jobs on HPC environments
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 27, 2022Jun 27, 2022

    • codes

      Public
      Healthcare codes (e.g., ICD9, ICD10, ATC)
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 10, 2021Dec 10, 2021

    • shendurelab-cfDNA

      Public
      Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA
      Python
      •
      MIT License
      •30•0•0•0•Updated Dec 9, 2021Dec 9, 2021