README.md

Identifying neurite by RRS method

This repository contains code for implementing the RRS method initially described in the paper:

https://doi.org/10.1038/s41598-019-39962-0

https://www.nature.com/articles/s41598-019-39962-0

Random-Reaction-Seed Method for Automated Identification of Neurite Elongation and Branching
by Alvason L., Lawrance C., and Jia Z., (2019)

Overview

tracing neurite in microfuidic device

Installation

pip install alva-machinery

Prerequisites

This code is written and tested in Python 3.6.5. The required Python libaries are:

• NumPy
• SciPy
• Matplotlib

Getting started

clone git https://github.com/alvason/identifying_neurite_by_RRS.git

Examples

Demo 0 of RRS code in Jupyter-notebook

Demo 1 of RRS code in Jupyter-notebook

Demo 2 of RRS code in Jupyter-notebook

Contact and more information

This repository is maintained by @alvason.