diff --git a/bean/mapping/GuideEditCounter.py b/bean/mapping/GuideEditCounter.py index e920f09..55161d3 100644 --- a/bean/mapping/GuideEditCounter.py +++ b/bean/mapping/GuideEditCounter.py @@ -490,7 +490,7 @@ def _count_reporter_edits( ) def _get_guide_counts_bcmatch_semimatch( - self, bcmatch_layer="X_bcmatch", semimatch_layer="X" + self, bcmatch_layer="X_bcmatch", semimatch_layer="X_semimatch" ): self.screen.layers[semimatch_layer] = np.zeros_like((self.screen.X)) R1_iter, R2_iter = self._get_fastq_iterators( diff --git a/bin/bean-run b/bin/bean-run index 5daca76..1ab8aac 100644 --- a/bin/bean-run +++ b/bin/bean-run @@ -59,19 +59,6 @@ warnings.filterwarnings( ) -DATACLASS_DICT = { - "Normal": VariantSortingScreenData, - "MixtureNormal": VariantSortingReporterScreenData, - "_MixtureNormal+Acc": VariantSortingReporterScreenData, # TODO: old - "MixtureNormal+Acc": VariantSortingReporterScreenData, - "MixtureNormalConstPi": VariantSortingScreenData, - "MultiMixtureNormal": TilingSortingReporterScreenData, - "MultiMixtureNormal+Acc": TilingSortingReporterScreenData, -} - - - - def main(args, bdata): if args.cuda: os.environ["CUDA_VISIBLE_DEVICES"] = "1"