Plotting issues (compartment_matrixplot, ATA plot)

[tinyimp80]

Thank you for developing such a great tool.
I got some plotting error.

> CS_out <- compartment_score(list(Control_100kb,Treat_100kb), bed = H3K27acPeaks)
> compartment_matrixplot(
  exp1 = Control_100kb,
  exp2 = Treat_100kb,
  CS_discovery = CS_out,
  chrom = "chrX", arm = "q",
  colour_lim = c(0, 15)
)

The compartment track on the Y axis is upside down.

And in the ATA plot, the positions of individual and difference have been switched.

> Treat_10kb_list <- list("Control" = Control_10kb,
                      "Treat" = Treat_10kb)
> ATA_Treat_COcalls <- ATA(Treat_10kb_list,
                       bed = TAD_Co)
> visualise(ATA_Treat_COcalls,
          colour_lim = c(0,50),
          colour_lim_contrast = c(-5,5),
          metric = 'diff',
          focus = 1)

Plz, help me resolve the issue.

> sessionInfo()
R version 4.3.3 (2024-02-29)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: Ubuntu 16.04.7 LTS

Matrix products: default
BLAS/LAPACK: /home/tinyimp/miniconda3/envs/R/lib/libopenblasp-r0.3.27.so;  LAPACK version 3.12.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=ko_KR.UTF-8        LC_COLLATE=en_US.UTF-8     LC_MONETARY=ko_KR.UTF-8   
 [6] LC_MESSAGES=en_US.UTF-8    LC_PAPER=ko_KR.UTF-8       LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=ko_KR.UTF-8 LC_IDENTIFICATION=C       

time zone: Asia/Seoul
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] ggplot2_3.5.1 GENOVA_1.0.1 

loaded via a namespace (and not attached):
 [1] vctrs_0.6.5       cli_3.6.2         rlang_1.1.3       purrr_1.0.2       generics_0.1.3    textshaping_0.4.0 data.table_1.15.4
 [8] glue_1.7.0        labeling_0.4.3    colorspace_2.1-0  ragg_1.3.2        scales_1.3.0      fansi_1.0.6       grid_4.3.3       
[15] munsell_0.5.1     tibble_3.2.1      yaml_2.3.8        lifecycle_1.0.4   compiler_4.3.3    dplyr_1.1.4       pkgconfig_2.0.3  
[22] tidyr_1.3.1       rstudioapi_0.16.0 systemfonts_1.1.0 farver_2.1.2      R6_2.5.1          tidyselect_1.2.1  utf8_1.2.4       
[29] pillar_1.9.0      magrittr_2.0.3    tools_4.3.3       withr_3.0.0       gtable_0.3.5     
R version 4.3.3 (2024-02-29)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: Ubuntu 16.04.7 LTS

Matrix products: default
BLAS/LAPACK: /home/tinyimp/miniconda3/envs/R/lib/libopenblasp-r0.3.27.so;  LAPACK version 3.12.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=ko_KR.UTF-8        LC_COLLATE=en_US.UTF-8     LC_MONETARY=ko_KR.UTF-8   
 [6] LC_MESSAGES=en_US.UTF-8    LC_PAPER=ko_KR.UTF-8       LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=ko_KR.UTF-8 LC_IDENTIFICATION=C       

time zone: Asia/Seoul
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] ggplot2_3.5.1 GENOVA_1.0.1 

loaded via a namespace (and not attached):
 [1] vctrs_0.6.5       cli_3.6.2         rlang_1.1.3       purrr_1.0.2       generics_0.1.3    textshaping_0.4.0 data.table_1.15.4
 [8] glue_1.7.0        labeling_0.4.3    colorspace_2.1-0  ragg_1.3.2        scales_1.3.0      fansi_1.0.6       grid_4.3.3       
[15] munsell_0.5.1     tibble_3.2.1      yaml_2.3.8        lifecycle_1.0.4   compiler_4.3.3    dplyr_1.1.4       pkgconfig_2.0.3  
[22] tidyr_1.3.1       rstudioapi_0.16.0 systemfonts_1.1.0 farver_2.1.2      R6_2.5.1          tidyselect_1.2.1  utf8_1.2.4       
[29] pillar_1.9.0      magrittr_2.0.3    tools_4.3.3       withr_3.0.0       gtable_0.3.5     

[sarahmnry]

Hey,

I am having the same issue of plot legends being reversed (difference in front of individual & vice-versa). This occurs for ARA, ATA plots but also using tornado_insulation().

Does anyone have a fix for this please?