TODO.md

TODO

List of procedures to implement

General I/O

Load and clean data using regex based functions

Preprocessing

1. centering

2. scaling

3. autoscaling (SD -> 1)

4. pareto scaling (not dimensionless)

5. transformations: fft, wavelet a. filtering b. Normalization c. Standard Normal Variate (centering and scaling)

6. Mulitiplicative scatter corretion

7. probablistic quotiaion normazations

8. baseline correction (need to write a decent one, other project)

9. smoothing rebinning

10. differentation

11. cutting outregions of interest a. Derivaties etc b. Decompostions c. mean subrations

Clustering/Classification

1. Compute PCA and scree plots a. Other alterivates NMF b nonlinear: Locally linear embedding, isomap, kernel map
2. Allow labeling
3. Clustering using sklearn