diff --git a/doctrees/environment.pickle b/doctrees/environment.pickle
index f42c33b..17d5a80 100644
Binary files a/doctrees/environment.pickle and b/doctrees/environment.pickle differ
diff --git a/doctrees/index.doctree b/doctrees/index.doctree
index 167e141..152c7bf 100644
Binary files a/doctrees/index.doctree and b/doctrees/index.doctree differ
diff --git a/html/index.html b/html/index.html
index 5eb0c5e..a1e549b 100644
--- a/html/index.html
+++ b/html/index.html
@@ -54,8 +54,6 @@ <h2>Disclaimer<a class="headerlink" href="#disclaimer" title="Link to this headi
 If you have any ideas/suggestions or if you find any bug, please feel free to
 open an <a class="reference external" href="https://github.com/saezlab/FUNKI/issues">GitHub issue</a>. You can also
 contribute via <a class="reference external" href="https://github.com/saezlab/FUNKI/pulls">pull request</a>.</p>
-<p>Please note that the GUI is not yet implemented and FUNKI can only be accessible
-as a Python package.</p>
 </section>
 <section id="installation">
 <h2>Installation<a class="headerlink" href="#installation" title="Link to this heading">¶</a></h2>
@@ -70,7 +68,24 @@ <h2>Usage<a class="headerlink" href="#usage" title="Link to this heading">¶</a>
 <a class="reference external" href="https://saezlab.github.io/FUNKI/html/input.html#funki.input.DataSet"><code class="docutils literal notranslate"><span class="pre">DataSet</span></code></a>
 object. This class in turn inherits (i.e. is built on top of) the
 <a class="reference external" href="https://anndata.readthedocs.io/en/latest/generated/anndata.AnnData.html"><code class="docutils literal notranslate"><span class="pre">anndata.AnnData</span></code></a>
-class</p>
+class. You can explore all implemented functionalities available
+programmatically in the <a class="reference external" href="https://saezlab.github.io/FUNKI/">Documentation</a>.</p>
+<p>If you want to access FUNKI via the GUI, you need to execute the application
+script with your Python interpreter, but first you need to download and install
+FUNKI using the commands below:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>git<span class="w"> </span>clone<span class="w"> </span>git@github.com:saezlab/FUNKI.git
+<span class="nb">cd</span><span class="w"> </span>FUNKI
+pip<span class="w"> </span>install<span class="w"> </span>./
+</pre></div>
+</div>
+<p>Now you can launch the FUNKI by simply running the application script:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>python<span class="w"> </span>src/funki/app.py
+</pre></div>
+</div>
+<p>This should automatically open the application in your default internet browser.
+If that is not the case, you can type or copy the following address (default)
+in the  browser bar: <code class="docutils literal notranslate"><span class="pre">http://127.0.0.1:8050/</span></code></p>
+<p><strong>Note:</strong> Refreshing the page will also restart the application.</p>
 </section>
 <section id="documentation">
 <h2>Documentation<a class="headerlink" href="#documentation" title="Link to this heading">¶</a></h2>
diff --git a/html/searchindex.js b/html/searchindex.js
index 1ef0ddc..407f354 100644
--- a/html/searchindex.js
+++ b/html/searchindex.js
@@ -1 +1 @@
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