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pygem_environment.yml
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name: py_gem_2
channels:
- defaults
dependencies:
- _libgcc_mutex=0.1
- _openmp_mutex=5.1
- bzip2=1.0.8
- ca-certificates=2023.08.22
- ld_impl_linux-64=2.38
- libffi=3.4.4
- libgcc-ng=11.2.0
- libgomp=11.2.0
- libstdcxx-ng=11.2.0
- libuuid=1.41.5
- ncurses=6.4
- openssl=3.0.12
- pip=23.3
- python=3.11.5
- readline=8.2
- setuptools=68.0.0
- sqlite=3.41.2
- tk=8.6.12
- wheel=0.41.2
- xz=5.4.2
- zlib=1.2.13
- pip:
- absl-py==2.0.0
- aiohttp==3.9.0
- aiosignal==1.3.1
- anndata==0.10.5.post1
- array-api-compat==1.4.1
- attrs==23.1.0
- cachetools==5.3.2
- certifi==2023.11.17
- charset-normalizer==3.3.2
- click==8.1.7
- contourpy==1.2.0
- cycler==0.12.1
- filelock==3.13.1
- fonttools==4.45.0
- frozenlist==1.4.0
- fsspec==2023.10.0
- google-auth==2.23.4
- google-auth-oauthlib==1.1.0
- grpcio==1.59.3
- h5py==3.10.0
- idna==3.4
- jinja2==3.1.2
- joblib==1.3.2
- jsonschema==4.20.0
- jsonschema-specifications==2023.11.1
- kiwisolver==1.4.5
- lightning-utilities==0.10.0
- llvmlite==0.42.0
- markdown==3.5.1
- markupsafe==2.1.3
- matplotlib==3.8.2
- mpmath==1.3.0
- msgpack==1.0.7
- multidict==6.0.4
- natsort==8.4.0
- networkx==3.2.1
- numba==0.59.0
- numpy==1.26.2
- nvidia-cublas-cu12==12.1.3.1
- nvidia-cuda-cupti-cu12==12.1.105
- nvidia-cuda-nvrtc-cu12==12.1.105
- nvidia-cuda-runtime-cu12==12.1.105
- nvidia-cudnn-cu12==8.9.2.26
- nvidia-cufft-cu12==11.0.2.54
- nvidia-curand-cu12==10.3.2.106
- nvidia-cusolver-cu12==11.4.5.107
- nvidia-cusparse-cu12==12.1.0.106
- nvidia-nccl-cu12==2.18.1
- nvidia-nvjitlink-cu12==12.3.101
- nvidia-nvtx-cu12==12.1.105
- oauthlib==3.2.2
- packaging==23.2
- pandas==2.1.3
- patsy==0.5.6
- pillow==10.1.0
- protobuf==4.23.4
- psutil==5.9.6
- pyarrow==14.0.1
- pyasn1==0.5.1
- pyasn1-modules==0.3.0
- pynndescent==0.5.11
- pyparsing==3.1.1
- python-dateutil==2.8.2
- pytorch-lightning==2.1.2
- pytz==2023.3.post1
- pyyaml==6.0.1
- ray==2.8.0
- referencing==0.31.0
- requests==2.31.0
- requests-oauthlib==1.3.1
- rpds-py==0.13.1
- rsa==4.9
- scanpy==1.9.8
- scikit-learn==1.3.2
- scipy==1.11.4
- seaborn==0.13.0
- session-info==1.0.0
- six==1.16.0
- statsmodels==0.14.1
- stdlib-list==0.10.0
- sympy==1.12
- tensorboard==2.15.1
- tensorboard-data-server==0.7.2
- tensorboard-plugin-wit==1.8.1
- tensorboardx==2.6.2.2
- threadpoolctl==3.2.0
- torch==2.1.1
- torch-geometric==2.4.0
- torchaudio==2.1.1
- torchmetrics==1.2.0
- torchvision==0.16.1
- tqdm==4.66.1
- triton==2.1.0
- typing-extensions==4.8.0
- tzdata==2023.3
- umap-learn==0.5.5
- urllib3==2.1.0
- werkzeug==3.0.1
- yarl==1.9.3