v0.14.3

• Reorganized module directory tree: moved pypath and scripts from src to the root of the repo
• Settings are stored and read from a yaml file
• New resources: CancerDrugsDB, CellTypist, PanglaoDB, PROGENy
• ID translation: all Ensembl Genomes organisms supported in Biomart ID translation
• Network is able to load small molecule-protein interactions
• Fixed the processing of extra attributes and DoRothEA confidence levels in export and server
• Many further improvements in download timeouts and ID translation and many minor bugfixes

v0.13.11

• New resources: scConnect, CellCall, Cellinker
• Extra edge attributes (misc. resource specific interaction attributes) in the Network database
• EWtra edge attributes in the web service: a column with JSON encoded arbitrary, resource specific edge attributes. This column can be accessed by the fields=extra_attrs GET parameter.
• Complete revision of the inputs module: fixed most of the failing procedures, all the OmniPath resource can be downloaded, processed and used for database build without issue
• inputs.main is empty, all resources have their own module within pypath.inputs
• New ID translation resources in pypath.utils.mapping, especially for microarray probe IDs (Ensembl) and small molecule IDs (UniChem)
• Besides NCBI HomoloGene, using also Ensembl BioMart for homology translation
• Many small improvements & bug fixes

v0.11.53

• New protein complex resource: hu.MAP 2.0
• New annotation resource: Human Cell Map
• A number of small bug fixes

v0.11.44

• New ligand-receptor network, annotations and intercell resource: talklr
• Fixed dropped xlrd xlsx support
• Webpage is not part of the module any more, only a minimal html page included as default
• Many server bugfixes

v0.11.38

• CellChatDB: new ligand-receptor network, annotation, intercell annotation and protein complex resource
• CellTalkDB: new ligand-receptor network and annotationresource
• PathwayCommons transcriptional regulation network input definitions
• Fixed issues with Human Reference Interactome URLs and preprocessing

v0.11.37

• Fixed import loops in Python 3.6
• New network resource: Wojtowicz2020
• Minor fixes affecting DoRothEA, PathwayCommons, Lit-BM-17, pyreact

v0.11.34

• Many improvements affecting network build
• Especially DoRothEA and its distribution by the server;
• Little adjustments on pyreact
• Server: properly showing secondary resources
• inputs.dorothea works from up-to-date data

0.11.20

Release at the time of the bioRxiv and journal submission of the new OmniPath manuscript.

v0.11.18

HPRD: mod type proteolytic cleavage -> cleavage

v0.11.13

• A complete redesign of the intercellular communication database
• Many new annotation and network resources