sanger_test.yml

name: sanger-tol LSF tests

on:
  workflow_dispatch:
jobs:
  run-tower:
    name: Run LSF tests
    runs-on: ubuntu-latest
    steps:
      - name: Launch workflow via tower
        uses: seqeralabs/action-tower-launch@v2
        with:
          workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
          access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
          compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
          revision: ${{ github.sha }}
          workdir: ${{ secrets.TOWER_WORKDIR_PARENT }}/work/${{ github.repository }}/work-${{ github.sha }}
          parameters: |
            {
              "outdir": "${{ secrets.TOWER_WORKDIR_PARENT }}/results/${{ github.repository }}/results-${{ github.sha }}",
              "use_work_dir_as_temp": true,
            }
          profiles: test,sanger,singularity,cleanup

      - uses: actions/upload-artifact@v3
        with:
          name: Tower debug log file
          path: |
            tower_action_*.log
            tower_action_*.json