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modules.json
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{
"name": "sanger-tol/readmapping",
"homePage": "https://github.com/sanger-tol/readmapping",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bbmap/filterbyname": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"blast/blastn": {
"branch": "master",
"git_sha": "583edaf97c9373a20df05a3b7be5a6677f9cd719",
"installed_by": ["modules"]
},
"bwamem2/index": {
"branch": "master",
"git_sha": "7081e04c18de9480948d34513a1c1e2d0fa9126d",
"installed_by": ["modules"]
},
"bwamem2/mem": {
"branch": "master",
"git_sha": "2201e21b09213f083832ac58e33353d410a6fde7",
"installed_by": ["modules"]
},
"crumble": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "82024cf6325d2ee194e7f056d841ecad2f6856e9",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "4e5f4687318f24ba944a13609d3ea6ebd890737d",
"installed_by": ["modules"]
},
"minimap2/align": {
"branch": "master",
"git_sha": "a33ef9475558c6b8da08c5f522ddaca1ec810306",
"installed_by": ["modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
"installed_by": ["modules"]
},
"samtools/fastq": {
"branch": "master",
"git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
"installed_by": ["modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
"installed_by": ["modules"]
},
"samtools/merge": {
"branch": "master",
"git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/merge/samtools-merge.diff"
},
"samtools/stats": {
"branch": "master",
"git_sha": "1fe379cf6e6c1e6fa5e32bcbeefea0f1e874dac6",
"installed_by": ["modules"]
},
"samtools/view": {
"branch": "master",
"git_sha": "6c2309aaec566c0d44a6cf14d4b2d0c51afe2e91",
"installed_by": ["modules"]
},
"seqkit/fq2fa": {
"branch": "master",
"git_sha": "03fbf6c89e551bd8d77f3b751fb5c955f75b34c5",
"installed_by": ["modules"]
},
"untar": {
"branch": "master",
"git_sha": "4e5f4687318f24ba944a13609d3ea6ebd890737d",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "92de218a329bfc9a9033116eb5f65fd270e72ba3",
"installed_by": ["subworkflows"]
},
"utils_nfvalidation_plugin": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
}
}
}
}
}
}