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We used Azimuth to annotate the T cell subtypes, most cells were annotated as CD4 T cells but when check with CD8A, CD8B and CD4 expression, majority of them were CD8 T cells.
We then manually subset the CD8 and CD4 T cells based on CD8A, CD8B and CD4 and re run the Azimuth on the CD8 T cells , most CD8 T cells were still classified as CD4 T cells.
How to solve this issue?
Thank you in advance
The text was updated successfully, but these errors were encountered:
We used Azimuth to annotate the T cell subtypes, most cells were annotated as CD4 T cells but when check with CD8A, CD8B and CD4 expression, majority of them were CD8 T cells.
We then manually subset the CD8 and CD4 T cells based on CD8A, CD8B and CD4 and re run the Azimuth on the CD8 T cells , most CD8 T cells were still classified as CD4 T cells.
How to solve this issue?
Thank you in advance
The text was updated successfully, but these errors were encountered: