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How to read most recent 10x 5k prime xenium data? #936

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Yijia-Jiang opened this issue Jan 14, 2025 · 0 comments

Yijia-Jiang commented Jan 14, 2025

Hello, 10X updated the most recent Xenium 5k prime dataset, which consists of zarr files (example dataset: https://www.10xgenomics.com/datasets/xenium-prime-ffpe-human-prostate)

The previous xenium tutorial was for xenium v1 (https://squidpy.readthedocs.io/en/stable/notebooks/tutorials/tutorial_xenium.html), which has different output bundle format. Could you update the code to read the newest Xenium 5k prime datasets?

Thank you very much!

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