Version 2.3.0

• Extensive differential splicing analysis using IsoformSwitchAnalyzeR.
• Added ability to choose the strategy for which transcript to choose for gene based analysis (canonical from ensembl, most significant, custom ID list).
• Differential expression tables now also show the per sample normalized transcript expression.
• Expression matrix output is now batch effect corrected and based on log counts.
• Migration to R 4.1.
• Various little fixes for corner cases.

Version 2.2.1

• Fix path to source file when using workflow as a module.

Version 2.2.0

• Added interactive volcano plot (@tedil, @fxwiegand).

Version 2.1.1

The workflow can now handle an empty genes_of_interest list in config.yaml.

Version 2.1.0

The reference transcriptome is now downloaded automatically from Ensembl, using new release and build specifications in the config.yaml.

Version 2.0.4

Add missing workflow catalog configuration file.

Version 2.0.3

Switch to new deployment and usage info that conforms with the snakemake workflow catalogue setup.

Version 2.0.2

Extended caption on p-value histograms and empty data fix for fgsea (@dlaehnemann).

Version 2.0.1

Various little improvements and fixes.

Version 2.0.0

This version adds a ton of new features like GSEA, SPIA, and many plots and tweaks.