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a problem about the easy-search output format #909

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1nkcat opened this issue Nov 29, 2024 · 1 comment
Open

a problem about the easy-search output format #909

1nkcat opened this issue Nov 29, 2024 · 1 comment

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@1nkcat
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1nkcat commented Nov 29, 2024

i saw that --format-output it has pident,fident,nident, the default is fident the fraction of the identical matches ,the pident is the percentage of the identical matches. I just wonder what the differences between pident and fident? which is the blast format identity?

@milot-mirdita
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This was wrong in MMseqs2 for quite some time (#337). The default fident is the one that matches blast's output.

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