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Thanks for your useful tools!
When I tried to run ANNOVAR following your guide, I got an error from ANNOVAR downloading the ALL.sites.2015_08 before I actually started annotate each SNP.
NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg38_1000g2015aug_all.txt.gz ... Failed
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg38_1000g2015aug_all.txt.idx.gz ... Failed
WARNING: Some files cannot be downloaded, including http://www.openbioinformatics.org/annovar/download/hg38_1000g2015aug_all.txt.idx.gz, http://www.openbioinformatics.org/annovar/download/hg38_1000g2015aug_all.txt.gz
And the author of ANNOVAR explained that ALL.sites.2015_08 is not available for old version of ANNOVAR(here)
So I wonder which part of the code should be modified to make sure it run correctly?
I would be grateful if you help me out!
The text was updated successfully, but these errors were encountered:
I tried to download via perl annotate_variation.pl -buildver hg38 -downdb -webfrom annovar 1000g2015aug humandb/
and run -protocol refGene,ensGene,avsnp150,ALL.sites.2015_08l
which came out to be fine.
Thanks for your useful tools!
When I tried to run ANNOVAR following your guide, I got an error from ANNOVAR downloading the ALL.sites.2015_08 before I actually started annotate each SNP.
And the author of ANNOVAR explained that ALL.sites.2015_08 is not available for old version of ANNOVAR(here)
So I wonder which part of the code should be modified to make sure it run correctly?
I would be grateful if you help me out!
The text was updated successfully, but these errors were encountered: