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ALL.sites.2015_08 is not available for ANNOVAR #7

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nanu23333 opened this issue Dec 18, 2024 · 1 comment
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ALL.sites.2015_08 is not available for ANNOVAR #7

nanu23333 opened this issue Dec 18, 2024 · 1 comment

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@nanu23333
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Thanks for your useful tools!
When I tried to run ANNOVAR following your guide, I got an error from ANNOVAR downloading the ALL.sites.2015_08 before I actually started annotate each SNP.

NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg38_1000g2015aug_all.txt.gz ... Failed
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg38_1000g2015aug_all.txt.idx.gz ... Failed
WARNING: Some files cannot be downloaded, including http://www.openbioinformatics.org/annovar/download/hg38_1000g2015aug_all.txt.idx.gz, http://www.openbioinformatics.org/annovar/download/hg38_1000g2015aug_all.txt.gz

And the author of ANNOVAR explained that ALL.sites.2015_08 is not available for old version of ANNOVAR(here)

So I wonder which part of the code should be modified to make sure it run correctly?

I would be grateful if you help me out!

@nanu23333
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I tried to download via
perl annotate_variation.pl -buildver hg38 -downdb -webfrom annovar 1000g2015aug humandb/
and run
-protocol refGene,ensGene,avsnp150,ALL.sites.2015_08l
which came out to be fine.

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