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beginning testing
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@ACEnglish
ACEnglish committed Dec 19, 2023
1 parent 4a49be8 commit 6895585
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Showing 19 changed files with 4,655 additions and 5,824 deletions.
4,200 changes: 4,200 additions & 0 deletions repo_utils/test_files/external/fake_mafft/lookup/fm_03ffe346bf2196b0ceebee5beb9a6acb.msa
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195 changes: 0 additions & 195 deletions repo_utils/test_files/external/fake_mafft/lookup/fm_0d3666ebd38cd600bb407b0bf169b260.msa
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2 changes: 1 addition & 1 deletion ...p/fm_a3b02bde8a503aab8bb0da7f33f98a9d.msa → ...p/fm_198bdf87b60e4ea96dbdacfeb79a01dc.msa
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Expand Up @@ -83,7 +83,7 @@ aacgcacccgagtcccccgggcctccgcgcctccgtgtgcaggtcccccgggcctccgcg
cctccgtgtgcaggtcccccgggcctccgcctctccgtgtgcaggtcccccgggcctccg
cgcctccgtgtgcaggtcccccgggcctccgcgtctgtgtgtgcaggtcccccgggcctc
cgcgtctgtgtgtgcaggtcccccgggcctccgcgcctccgtgtgcaggtcccccgggcc
tccgcgtctgtgtgtgcaggtcccccgggcctccgcgtctgtgtgtgcaggtcccccggg
tccgcgtctgtgtgtgcaggtcccccgggcctccgcgtctgcgtgtgcaggtcccccggg
cctccgcgcctccgtgtgcaggtcccccgggcctccgcgcctccgtgtgcaggtcccccg
ggcctccgcgcctccgtgtgcaggtcccccgggcctccgcgtctgtgtgtgcaggtcccc
cgggcctccgcgcctccgtgtgcaggtcccccgggcctccgcgtctccgtgtgcaggtcc
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50 changes: 25 additions & 25 deletions ...p/fm_b8a80f7b3dfaf0a255d5fa6ea4cdadc6.msa → ...p/fm_2f584d342cd0122481374518f9e81904.msa
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Original file line number Diff line number Diff line change
Expand Up @@ -11,11 +11,11 @@ gaggtcaagagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaaa
tacaaaaaattagccgggcgtggtggtgggcacctgtagtcccagctactcgggaggctg
aggcagaatggcgtgaacctggtaggcagagcttgcagtgagctgagatcacgccactgc
actccagcctgggtgacagagcaagactccatctcaaaaataaataaataaataaataaa
taaataa-taataataataataaaaaa---------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------
ta-------aataataataataataataaagacttgtgatcctctccctctccctctccc
tctccgtctccctctccctctccctctccctccctctccgtctccgtctccgtctccgtc
tccctctccctctccccacggtctccctctcatgcggagccgaagctggactgtactgct
gccatctcggctcactgcaacctccctgcctgattctcctgcctcagcctgccgagtgcc
tgcgattgcaggcacgcgccgccacgcctgactggtt
>syndip_2_chr20:32722324-32723313
acagaggtctcctgaaaattagtgcccataacaggtgtttggtagacaggtctcagccct
cagacaaacccatttccaaagatgaaggccagagaatgagaataatgatttatcgttctg
Expand All @@ -29,11 +29,11 @@ gaggtcaagagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaaa
tacaaaaaattagccgggcgtggtggtgggcacctgtagtcccagctactcgggaggctg
aggcagaatggcgtgaacctggtaggcagagcttgcagtgagctgagatcacaccactgc
actccagcctgggtgacagagcaagactccatctcaaaaataaataaataaataaataaa
taaataaataataataataataataat---------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------
taaataaataataataataataataataaagacttgtgatcctctccctctccctctccc
tctccgtctccctctccctctccctctccctccctctccgtctccgtctccgtctccgtc
tccctctccctctccccacggtctccctctcatgcggagccgaagctggactgtactgct
gccatctcggctcactgcaacctccctgcctgattctcctgcctcagcctgccgagtgcc
tgcgattgcaggcacgcgccgccacgcctgactggtt
>p:HG002_1_chr20:32722324-32723313
acagaggtctcctgaaaattagtgcccataacaggtgtttggtagacaggtctcagccct
cagacaaacccatttccaaagatgaaggccagagaatgagaataatgatttatcgttctg
Expand All @@ -47,11 +47,11 @@ gaggtcaagagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaaa
tacaaaaaattagccgggcgtggtggtgggcacctgtagtcccagctactcgggaggctg
aggcagaatggcgtgaacctggtaggcagagcttgcagtgagctgagatcacaccactgc
actccagcctgggtgacagagcaagactccatctcaaaaataaataaataaataaataaa
taaataa-----------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------
ta-------aataataataataataataaagacttgtgatcctctccctctccctctccc
tctccgtctccctctccctctccctctccctccctctccgtctccgtctccgtctccgtc
tccctctccctctccccacggtctccctctcatgcggagccgaagctggactgtactgct
gccatctcggctcactgcaacctccctgcctgattctcctgcctcagcctgccgagtgcc
tgcgattgcaggcacgcgccgccacgcctgactggtt
>p:HG002_2_chr20:32722324-32723313
acagaggtctcctgaaaattagtgcccataacaggtgtttggtagacaggtctcagccct
cagacaaacccatttccaaagatgaaggccagagaatgagaataatgatttatcgttctg
Expand All @@ -65,11 +65,11 @@ gaggtcaagagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaaa
tacaaaaaattagccgggcgtggtggtgggcacctgtagtcccagctactcgggaggctg
aggcagaatggcgtgaacctggtaggcagagcttgcagtgagctgagatcacgccactgc
actccagcctgggtgacagagcaagactccatctcaaaaataaataaataaataaataaa
taaataa-taataataataat---------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------
ta-------aataataataataataataaagacttgtgatcctctccctctccctctccc
tctccgtctccctctccctctccctctccctccctctccgtctccgtctccgtctccgtc
tccctctccctctccccacggtctccctctcatgcggagccgaagctggactgtactgct
gccatctcggctcactgcaacctccctgcctgattctcctgcctcagcctgccgagtgcc
tgcgattgcaggcacgcgccgccacgcctgactggtt
>ref_chr20:32722324-32723313
acagaggtctcctgaaaattagtgcccataacaggtgtttggtagacaggtctcagccct
cagacaaacccatttccaaagatgaaggccagagaatgagaataatgatttatcgttctg
Expand All @@ -83,8 +83,8 @@ gaggtcaagagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaaa
tacaaaaaattagccgggcgtggtggtgggcacctgtagtcccagctactcgggaggctg
aggcagaatggcgtgaacctggtaggcagagcttgcagtgagctgagatcacgccactgc
actccagcctgggtgacagagcaagactccatctcaaaaataaataaataaataaataaa
taaataa-taataataataataaagacttgtgatcctctccctctccctctccctctccg
tctccctctccctctccctctccctccctctccgtctccgtctccgtctccgtctccctc
tccctctccccacggtctccctctcatgcggagccgaagctggactgtactgctgccatc
tcggctcactgcaacctccctgcctgattctcctgcctcagcctgccgagtgcctgcgat
tgcaggcacgcgccgccacgcctgactggtt
ta-------aataataataataataataaagacttgtgatcctctccctctccctctccc
tctccgtctccctctccctctccctctccctccctctccgtctccgtctccgtctccgtc
tccctctccctctccccacggtctccctctcatgcggagccgaagctggactgtactgct
gccatctcggctcactgcaacctccctgcctgattctcctgcctcagcctgccgagtgcc
tgcgattgcaggcacgcgccgccacgcctgactggtt
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