functest fix

new SV.BND messed up vcf2df results
ACEnglish · Jan 5, 2025 · a2620d0 · a2620d0
1 parent f92efe5
commit a2620d0
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Showing 8 changed files with 2 additions and 2 deletions.
diff --git a/repo_utils/answer_key/vcf2df/multi_vcf2df.jl b/repo_utils/answer_key/vcf2df/multi_vcf2df.jl
diff --git a/repo_utils/answer_key/vcf2df/single_vcf2df.jl b/repo_utils/answer_key/vcf2df/single_vcf2df.jl
diff --git a/repo_utils/answer_key/vcf2df/subset_vcf2df.jl b/repo_utils/answer_key/vcf2df/subset_vcf2df.jl
diff --git a/repo_utils/answer_key/vcf2df/truv2df.jl b/repo_utils/answer_key/vcf2df/truv2df.jl
diff --git a/repo_utils/answer_key/vcf2df/vcf2df.jl b/repo_utils/answer_key/vcf2df/vcf2df.jl
diff --git a/repo_utils/answer_key/vcf2df/vcf2df_bare.jl b/repo_utils/answer_key/vcf2df/vcf2df_bare.jl
diff --git a/truvari/comparisons.py b/truvari/comparisons.py
@@ -418,7 +418,7 @@ def entry_variant_type(entry):
     try:
         if entry.alleles_variant_types[1] == 'BND':
             return truvari.SV.BND
-    except IndexError:
+    except (IndexError, AttributeError):
         pass
 
     ret_type = None

diff --git a/truvari/vcf2df.py b/truvari/vcf2df.py
@@ -77,7 +77,7 @@ def get_svtype(svtype):
         >>> truvari.get_svtype("INS")
         <SV.INS: 2>
         >>> truvari.get_svtype("foo")
-        <SV.UNK: 6>
+        <SV.UNK: 7>
     """
     try:
         return SV.__members__[svtype]