util improvement

compress index force write, also.
ACEnglish · Nov 19, 2023 · dedd518 · dedd518
1 parent 546fea3
commit dedd518
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/truvari/utils.py b/truvari/utils.py
@@ -432,7 +432,7 @@ def compress_index_vcf(fn, fout=None, remove=True):
     m_tmp = make_temp_filename(suffix='.vcf')
     with open(m_tmp, 'w') as out_hdlr:
         out_hdlr.write(bcftools.sort(fn))
-    pysam.tabix_compress(m_tmp, fout)
+    pysam.tabix_compress(m_tmp, fout, force=True)
     pysam.tabix_index(fout, force=True, preset="vcf")
     if remove:
         os.remove(fn)