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Update changelog.
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ArnaudBelcour committed Mar 1, 2024
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7 changes: 5 additions & 2 deletions CHANGELOG.md
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Expand Up @@ -14,6 +14,7 @@ WARNING: change for individual and community scopes:
* Add a function to modify xml created by Pathway Tools (issue #60).
* Troubleshooting page in readthedocs (issue #24 and #25).
* Metadata json file created when using command line (both for `m2m` and `m2m_analysis`).
* Essential and alterative symbiont in `producibility_targets.json` (issue #19).
* Test for host for m2m metacom.

## Fix
Expand All @@ -25,17 +26,19 @@ WARNING: change for individual and community scopes:

## Modify

* Better deal with seeds that are absent from networks or not produced in iscope and also the seeds that are produced through interactions in cscope (issue #53).
* Exit m2m_analysis when there are unproducible targets (issue #23).
* Check forbidden characters during targets file creation.
* Do not allow abbreviation for argparse.
* Do not allow abbreviation in command arguments by argparse (issue #54).
* Sanitize use of tarfile extractall (issue #55).
* Remove unused dependency.
* First step in replacing `pkg_resources` (which will become deprecated in the future) with `importlib.metadata` or import of \_\_version\_\_.
* Move from `setup.py`/`setup.cfg` to `pyproject.toml`.
* Update tutorial.
* Update docs and readme.
* Update license year and affiliation.
* Move support for CI to Python 3.8 and 3.9.
* Remvoe import in `__init__.py` to avoid loading m2m_analysis dependencies when using only m2m.
* Remove import in `__init__.py` to avoid loading m2m_analysis dependencies when using only m2m.
* Avoid using os.unlink() function on Windows as it can lead to Permission Error.

# Metage2Metabo v1.5.4 (2023-05-25)
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