Fix fluviewer installation in consistency check workflow

.github/environments/fluviewer-bccdc-phl.yml

@@ -0,0 +1,18 @@
+name: fluviewer-bccdc-phl
+channels:
+  - bioconda
+  - conda-forge
+  - defaults
+dependencies:
+  - bbmap=39.01
+  - bcftools=1.17
+  - blast=2.14.1
+  - bwa=0.7.17
+  - samtools=1.17
+  - spades=4.0.0
+  - clustalw=2.1
+  - freebayes=1.3.6
+  - python=3
+  - pip
+  - pandas=2.0.3
+  - seaborn=0.12.2

.github/environments/fluviewer-kkuchinski.yml

@@ -0,0 +1,20 @@
+name: fluviewer-kkuchinski
+channels:
+  - bioconda
+  - conda-forge
+  - defaults
+dependencies:
+  - bbmap=39.01
+  - bcftools=1.17
+  - blast=2.14.1
+  - bwa=0.7.17
+  - samtools=1.17
+  - spades=3.15.3
+  - clustalw=2.1
+  - freebayes=1.3.6
+  - python=3
+  - pip
+  - pandas=2.0.3
+  - seaborn=0.12.2
+  - pip:
+    - FluViewer==0.1.11

.github/scripts/install_fluviewer_bccdc-phl.sh

@@ -4,7 +4,7 @@ source ${HOME}/.bashrc
 
 eval "$(conda shell.bash hook)"
 
-conda env create -f environment.yaml -n fluviewer-bccdc-phl
+conda env create -f .github/environments/fluviewer-bccdc-phl.yml -n fluviewer-bccdc-phl
 
 conda activate fluviewer-bccdc-phl
 

.github/scripts/install_fluviewer_kkuchinski.sh

@@ -6,8 +6,4 @@ eval "$(conda shell.bash hook)"
 
 fluviewer_version="0.1.11"
 
-conda env create -f environment.yaml -n fluviewer-kkuchinski
-
-conda activate fluviewer-kkuchinski
-
-pip install fluviewer==${fluviewer_version}
+conda env create -f .github/environments/fluviewer-kkuchinski.yml -n fluviewer-kkuchinski