v0.8.0

• Switch config file format to json (Issue #63)
• Add support for email notification through MCMS Messaging System (Issue #64)

Illumina Uploader v0.7

Enhancements

• Structured codebase to be pip-installable (Issue #10)
• Add feature to create an ignore.txt file based on the current contents of an input directory (Issue #44)
• Added a small suite of unit tests and continuous integration testing pipeline (Issue #59)

Bugfixes

• Fixed issue where timestamps in upload_complete.json file were incorrect (Issue #30)
• Fixed issue where upload_complete.json file would be written when upload was interrupted (Issue #36)
• Fixed issue where uploads would fail if notification email sending failed (Issue #37)
• Ensure that database backups directory can be located anywhere on the filesystem (Issue #50)

Illumina-uploader v0.5

Bugfixes:

• Fixed FileNotFoundError
• Fixed socket error
• Fixed upload_complete.json: use scp instead of rsync

Enhancements:

• New firstrun.sh script
• Added to upload_complete.json: input_directory, output_directory

Illumina-uploader v0.4

• add multiple output locations for nextseqs
• fix ssl problem in email
• fix nextseq regex
• fix before and after email format for lab
• changed COPY_COMPLETE file to upload_complete.json
• add upload_complete.json with start_upload_time and end_upload_time
• change UPLOADED to FINISHED in db
• fix timezone in log messages
• fix crash when rsync network error
• update config.ini.template

v0.1 illumina-uploader Release

See Changelog for details