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michauhl committed Mar 20, 2024
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7 changes: 6 additions & 1 deletion src/docs/faq.md
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Expand Up @@ -9,6 +9,11 @@ There you can also detailed installation instructions, as well as usage examples
a comprehensive documentation.


**What organisms are supported?**

Currently the database contains exclusively human RBP binding motifs. However, RBPBench is not restricted to human datasets, as the user can supply any genome file and define a custom motif database, or add additional motifs to search with the present database motifs.


**Where to send bug reports and feature requests?**

You can either open up a new issue in the RBPBench [GitHub repository](https://github.com/michauhl/RBPBench/issues)
Expand All @@ -18,4 +23,4 @@ You can either open up a new issue in the RBPBench [GitHub repository](https://g
<span style="font-size: 90%;">
**Figure**: History output files in red signal jobs with errors.
Click the bug icon (marked by violet circle) to generate a bug report.
</span>
</span>
6 changes: 2 additions & 4 deletions src/index.md
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Expand Up @@ -5,9 +5,7 @@ using a comprehensive collection of known RNA-binding protein (RBP) binding moti
RBPBench can be used for a variety of purposes, from RBP motif search (database or
user-supplied RBPs) in genomic regions, over motif co-occurrence analysis,
to benchmarking CLIP-seq peak caller methods as well as comparisons across
cell types and CLIP-seq protocols. **Access to the RBPBench webserver is free
to every users, including commercial users. The webserver uses a session cookie
to refer to the user data.**
cell types and CLIP-seq protocols.

```{toctree}
:hidden:
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[Webserver Tutorial](docs/webserver_tutorial.md)

[GitHub repository](https://github.com/michauhl/RBPBench)
[Command line version](https://github.com/michauhl/RBPBench)


![RBPBench example visualizations](assets/images/rbpbench_visualization_examples.png)
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