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michauhl committed Dec 15, 2023
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# Welcome to RBPBench!

RBPBench is multi-function tool to evaluate CLIP-seq and other genomic region data
using a comprehensive collection of known RBP binding motifs. RBPBench can be used
for a variety of purposes, from RBP motif search (database or user-supplied RBPs)
in genomic regions, over motif co-occurrence analysis, to benchmarking CLIP-seq peak
caller methods as well as comparisons across cell types and CLIP-seq protocols.
using a comprehensive collection of known RNA-binding protein (RBP) binding motifs.
RBPBench can be used for a variety of purposes, from RBP motif search (database or
user-supplied RBPs) in genomic regions, over motif co-occurrence analysis,
to benchmarking CLIP-seq peak caller methods as well as comparisons across
cell types and CLIP-seq protocols.

```{toctree}
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