Issues

• Unable to build clustering annotation from the command line

  BaderLab/AutoAnnotateApp#207 · Filter by author ghost opened on Sep 5, 2024
  13

  

• autoannotate-1.5.1-SNAPSHOT: Cytoscape freezes when I play with AA parameters (Annotation Display)

  BaderLab/AutoAnnotateApp#206 · Filter by author veroniquevoisin opened on May 15, 2024

• Color EM nodes according to cluster

  enhancement
  BaderLab/AutoAnnotateApp#205 · Filter by author mikekucera opened on Apr 3, 2024

• still get the double annotation when I try to move an annotation

  BaderLab/AutoAnnotateApp#198 · Filter by author veroniquevoisin opened on Jan 31, 2024
  2

• Upgrade Java and Guice

  BaderLab/AutoAnnotateApp#195 · Filter by author mikekucera opened on Jul 25, 2023

• Better Labels for clusters

  BaderLab/AutoAnnotateApp#189 · Filter by author mikekucera opened on Jun 9, 2023
  1

• Ellipses duplicated when a cluster is moved

  BaderLab/AutoAnnotateApp#187 · Filter by author veroniquevoisin opened on Mar 14, 2023 · 1.5
  2

• post analysis edges + annotations very buggy - loosing nodes from the main network, randomly creating duplicates of nodes

  bug
  BaderLab/AutoAnnotateApp#166 · Filter by author risserlin opened on Apr 19, 2021 · 1.4.0
  10

  

• AA collapse all clusters a bunch of nodes together in one spot

  bug
  BaderLab/AutoAnnotateApp#159 · Filter by author risserlin opened on Jan 5, 2021 · 1.3.4
  

• AA collapsed mode: adjust node size?

  BaderLab/AutoAnnotateApp#116 · Filter by author veroniquevoisin opened on Jan 9, 2018

• Re-collapse gives error

  bug
  BaderLab/AutoAnnotateApp#105 · Filter by author risserlin opened on Jul 26, 2017

• label order sometimes different for cyrest command and summary network

  bug
  BaderLab/AutoAnnotateApp#86 · Filter by author risserlin opened on Apr 13, 2017
  

• open previously saved session and collapse all without selecting anything issues

  bug
  BaderLab/AutoAnnotateApp#67 · Filter by author risserlin opened on Jun 23, 2016
  2

• AA freezes with collapsed network

  bugcytoscape-bug
  BaderLab/AutoAnnotateApp#66 · Filter by author risserlin opened on Jun 23, 2016

• save autoannotated collapsed network barfs

  cytoscape-bug
  BaderLab/AutoAnnotateApp#56 · Filter by author risserlin opened on May 30, 2016
  3

  

• get error sometimes after collapsing annotations and try to redo layout

  cytoscape-bug
  BaderLab/AutoAnnotateApp#54 · Filter by author risserlin opened on May 25, 2016
  1

  

• Instead of labels annotate groups with wordclouds

  enhancement
  BaderLab/AutoAnnotateApp#53 · Filter by author risserlin opened on May 25, 2016
  

• create subnetwork from AA collapsed network adds all nodes as well as groups

  cytoscape-bug
  BaderLab/AutoAnnotateApp#52 · Filter by author risserlin opened on May 25, 2016
  3

  

• Modify the shape of a subset of annotations

  enhancement
  BaderLab/AutoAnnotateApp#39 · Filter by author risserlin opened on Feb 26, 2016
  1

  

• Collapsing does not work well when clusters overlap

  enhancement
  BaderLab/AutoAnnotateApp#26 · Filter by author mikekucera opened on Feb 3, 2016