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Welcome to the wikibase.net wiki! In this documentation, every class of the api will be explained very detailed. However, here is also an overview over the basic functionality:

The base class that is needed everywhere is the WikibaseApi. It provides internal access to the api and handles user data. With the EntityProvider you can get an instance of the Entity class identified by it's EntityId, which is either an Item or a Property. Besides labels, descriptions and aliases for each language, Entities also consist of claims. A Claim has a main Snak that provides a DataValue. If the claim is a Statement (it always is a statement atm.), it can be proved by a Reference which itself contains several snaks. A claim actually also has some qualifiers but they are not supported yet.