RLS Version 0.4.0

Major changes: - Bundle a specific version of ARO with the package instead of downloading it from the internet (ensures reproducibility) - Add missing ARO mappings to manual curation. - Command line tool accept database/tool names in case-independent way (by @sebastianLedzianowski) - `lib.map_to_aro` returns `None` if there is no mapping (raises an exception if the name is missing)
BigDataBiology · Jun 10, 2024 · 7f639a8 · 7f639a8
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,17 +1,19 @@
 # Changelog
 
-## Unreleased
+## 0.4.0 - 10 June
 
 - Bundle a specific version of ARO with the package instead of downloading it from the internet (ensures reproducibility)
-- Add ADD missing ARO mappings to manual curation. A few ARO mappings were missing in the manual curation and they have been added.
+- Add missing ARO mappings to manual curation.
 
     Additions:
     - argannot_curation: (Phe)cpt_strepv:U09991:AAB36569:1412-1948:537 -> ARO: 3000249
     - megares_curation: MEG_2114 -> ARO: 3000249, MEG_2430 -> ARO: 3000016, MEG_985 -> ARO: 3000229, MEG_2865 -> ARO:3000387, MEG_7974 -> ARO:3000076
     - sarg_curation: AM180355.1.gene2260.p01 -> ARO: 3000250
     - resfinder_curation: dldHA2X_1_AL939117 -> ARO:3003970, grdA_1_QJX10702 -> ARO:3007382, EstDL136_1_JN242251 -> ARO:3000387
     - resfinderfg_curation: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase|KF629588.1|pediatric_fecal_sample|CYC -> ARO:3003970
-- Accept inputs in case-independent way on command-line (by @sebastianLedzianowski)
+- Command line tool accept database/tool names in case-independent way (by @sebastianLedzianowski)
+- `lib.map_to_aro` returns `None` if there is no mapping (raises an exception if the name is missing)
+
 
 ## 0.3.0 - 27 April 2024
 

diff --git a/docs/whatsnew.md b/docs/whatsnew.md
@@ -1,5 +1,16 @@
 ## What's New
 
+## 0.4.0 - 10 June
+
+### User-facing changes
+- Command line tool accept database/tool names in case-independent way (by @sebastianLedzianowski)
+- A few ARO mappings were missing in the manual curation and they have been added. See the [CHANGELOG](https://github.com/BigDataBiology/argNorm/blob/main/CHANGELOG.md) for more details.
+- `lib.map_to_aro` returns `None` if there is no mapping (raises an exception if the name is missing)
+
+### Internal changes
+
+- Bundle a specific version of ARO with the package instead of downloading it from the internet (ensures reproducibility)
+
 ## 0.3.0 - 27 April 2024
 
 ### User-facing changes

diff --git a/setup.py b/setup.py
@@ -7,7 +7,7 @@
 
 setup(
     name='argnorm',
-    version="0.3.0",
+    version="0.4.0",
     author='ArgNorm Developers',
     author_email='[email protected]',
     url="https://github.com/BigDataBiology/argNorm",