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@Congenica

Congenica

Enabling genomic medicine

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  1. psga-pipeline-sars-cov-2 psga-pipeline-sars-cov-2 Public

    Repository for Pathogen Sequence Genome Analysis Sars CoV 2 pipeline

    Python 5 1

  2. Perl-HTS Perl-HTS Public

    Perl XS wrapper for htslib

    Perl 2

  3. maxentscan maxentscan Public

    Maxentscan: Splice site scoring http://genes.mit.edu/burgelab/maxent/Xmaxentscan_scoreseq.html

    Perl 1

  4. bpipe bpipe Public

    Forked from ssadedin/bpipe

    Groovy

  5. cyvcf cyvcf Public

    Forked from bunop/cyvcf

    A fast Python library for VCF files leveraging Cython for speed.

    Python

  6. openlava-drmaa openlava-drmaa Public

    Forked from kiwiroy/openlava-drmaa

    DRMAA library for Openlava

    C

Repositories

Showing 10 of 20 repositories
  • psga-pipeline-sars-cov-2 Public

    Repository for Pathogen Sequence Genome Analysis Sars CoV 2 pipeline

    Congenica/psga-pipeline-sars-cov-2’s past year of commit activity
    Python 5 AGPL-3.0 1 0 2 Updated Dec 24, 2024
  • psga-reusable-workflows Public

    PSGA shared and reusable GitHub Action workflows

    Congenica/psga-reusable-workflows’s past year of commit activity
    0 0 0 0 Updated Aug 28, 2024
  • msisensor2 Public Forked from niu-lab/msisensor2

    Microsatellite instability (MSI) detection for tumor only data.

    Congenica/msisensor2’s past year of commit activity
    R 0 GPL-3.0 22 0 0 Updated Jun 4, 2024
  • ncov2019-artic-nf Public Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    Congenica/ncov2019-artic-nf’s past year of commit activity
    Nextflow 0 AGPL-3.0 87 0 0 Updated Apr 8, 2024
  • pysam Public Forked from pysam-developers/pysam

    Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

    Congenica/pysam’s past year of commit activity
    C 0 MIT 277 0 0 Updated Feb 28, 2023
  • panogram Public Forked from panogram/panogram
    Congenica/panogram’s past year of commit activity
    JavaScript 0 LGPL-2.1 15 0 1 Updated Feb 25, 2022
  • Genoverse Public Forked from DECIPHER-genomics/Genoverse

    HTML5 scrollable genome browser

    Congenica/Genoverse’s past year of commit activity
    JavaScript 0 44 0 0 Updated Feb 21, 2022
  • clinvar Public Forked from macarthur-lab/clinvar

    This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.

    Congenica/clinvar’s past year of commit activity
    Python 0 55 0 0 Updated Feb 12, 2021
  • cyvcf Public Forked from bunop/cyvcf

    A fast Python library for VCF files leveraging Cython for speed.

    Congenica/cyvcf’s past year of commit activity
    Python 0 MIT 13 0 0 Updated Feb 12, 2021
  • Alien-LibBigWig Public Forked from Ensembl/Alien-LibBigWig

    Alien build script for libBigWig

    Congenica/Alien-LibBigWig’s past year of commit activity
    Perl 0 Apache-2.0 1 0 0 Updated May 8, 2019
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