Fix: 404 from S3 when re-requesting manifest after it expired (#6441)

[hannes-ucsc]

Connected issues: #6441

Checklist

Author

• PR is a draft
• Target branch is develop
• Name of PR branch matches issues/<GitHub handle of author>/<issue#>-<slug>
• On ZenHub, PR is connected to all issues it (partially) resolves
• PR description links to connected issues
• PR title matches¹ that of a connected issue _{or comment in PR explains why they're different}
• PR title references all connected issues
• For each connected issue, there is at least one commit whose title references that issue

¹ when the issue title describes a problem, the corresponding PR
title is Fix: followed by the issue title

Author (partiality)

• Added p tag to titles of partial commits
• This PR is labeled partial _{or completely resolves all connected issues}
• This PR partially resolves each of the connected issues _{or does not have the partial label}

Author (chains)

• This PR is blocked by previous PR in the chain _{or is not chained to another PR}
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Author (reindex, API changes)

• Added r tag to commit title _{or the changes introduced by this PR will not require reindexing of any deployment}
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• This PR is labeled reindex:partial and its description documents the specific reindexing procedure for dev, anvildev, anvilprod and prod _{or requires a full reindex or carries none of the labels reindex:dev, reindex:anvildev, reindex:anvilprod and reindex:prod}
• This PR and its connected issues are labeled API _{or this PR does not modify a REST API}
• Added a (A) tag to commit title for backwards (in)compatible changes _{or this PR does not modify a REST API}
• Updated REST API version number in app.py _{or this PR does not modify a REST API}

Author (upgrading deployments)

• Ran make docker_images.json and committed the resulting changes _{or this PR does not modify azul_docker_images, or any other variables referenced in the definition of that variable}
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• Added u tag to commit title _{or this PR does not require upgrading deployments}
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• This PR is labeled deploy:shared _{or does not modify docker_images.json, and does not require deploying the shared component for any other reason}
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Author (hotfixes)

• Added F tag to main commit title _{or this PR does not include permanent fix for a temporary hotfix}
• Reverted the temporary hotfixes for any connected issues _{or the none of the stable branches (anvilprod and prod) have temporary hotfixes for any of the issues connected to this PR}

Author (before every review)

• Rebased PR branch on develop, squashed old fixups
• Ran make requirements_update _{or this PR does not modify requirements*.txt, common.mk, Makefile and Dockerfile}
• Added R tag to commit title _{or this PR does not modify requirements*.txt}
• This PR is labeled reqs _{or does not modify requirements*.txt}
• make integration_test passes in personal deployment _{or this PR does not modify functionality that could affect the IT outcome}

Peer reviewer (after approval)

• PR is not a draft
• Ticket is in Review requested column
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• PR is assigned to only the system administrator

System administrator (after approval)

• Actually approved the PR
• Labeled connected issues as demo or no demo
• Commented on connected issues about demo expectations _{or all connected issues are labeled no demo}
• Decided if PR can be labeled no sandbox
• A comment to this PR details the completed security design review
• PR title is appropriate as title of merge commit
• N reviews label is accurate
• Moved connected issues to Approved column
• PR is assigned to only the operator

Operator (before pushing merge the commit)

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• Squashed PR branch and rebased onto develop
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• Ran _select anvildev.shared && CI_COMMIT_REF_NAME=develop make -C terraform/shared apply_keep_unused _{or this PR is not labeled deploy:shared}
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• Checked the items in the next section _{or this PR is labeled deploy:gitlab}
• PR is assigned to only the system administrator _{or this PR is not labeled deploy:gitlab}

System administrator

• Background migrations for dev.gitlab are complete _{or this PR is not labeled deploy:gitlab}
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• PR is assigned to only the operator

Operator (before pushing merge the commit)

• Ran _select dev.gitlab && make -C terraform/gitlab/runner _{or this PR is not labeled deploy:runner}
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• Deleted unreferenced indices in sandbox _{or this PR does not remove catalogs or otherwise causes unreferenced indices in dev}
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• Started reindex in sandbox _{or this PR is not labeled reindex:dev}
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• Checked for failures in sandbox _{or this PR is not labeled reindex:dev}
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Operator (chain shortening)

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Operator (after pushing the merge commit)

• Pushed merge commit to GitLab dev
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• Ran _select dev.shared && make -C terraform/shared apply _{or this PR is not labeled deploy:shared}
• Ran _select anvildev.shared && make -C terraform/shared apply _{or this PR is not labeled deploy:shared}
• Deleted PR branch from GitHub
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Operator (reindex)

• Deindexed all unreferenced catalogs in dev _{or this PR is neither labeled reindex:partial nor reindex:dev}
• Deindexed all unreferenced catalogs in anvildev _{or this PR is neither labeled reindex:partial nor reindex:anvildev}
• Deindexed specific sources in dev _{or this PR is neither labeled reindex:partial nor reindex:dev}
• Deindexed specific sources in anvildev _{or this PR is neither labeled reindex:partial nor reindex:anvildev}
• Indexed specific sources in dev _{or this PR is neither labeled reindex:partial nor reindex:dev}
• Indexed specific sources in anvildev _{or this PR is neither labeled reindex:partial nor reindex:anvildev}
• Started reindex in dev _{or this PR does not require reindexing dev}
• Started reindex in anvildev _{or this PR does not require reindexing anvildev}
• Checked for, triaged and possibly requeued messages in both fail queues in dev _{or this PR does not require reindexing dev}
• Checked for, triaged and possibly requeued messages in both fail queues in anvildev _{or this PR does not require reindexing anvildev}
• Emptied fail queues in dev _{or this PR does not require reindexing dev}
• Emptied fail queues in anvildev _{or this PR does not require reindexing anvildev}

Operator

• Propagated the deploy:shared, deploy:gitlab, deploy:runner, API, reindex:partial, reindex:anvilprod and reindex:prod labels to the next promotion PRs _{or this PR carries none of these labels}
• Propagated any specific instructions related to the deploy:shared, deploy:gitlab, deploy:runner, API, reindex:partial, reindex:anvilprod and reindex:prod labels, from the description of this PR to that of the next promotion PRs _{or this PR carries none of these labels}
• PR is assigned to no one

Shorthand for review comments

• L line is too long
• W line wrapping is wrong
• Q bad quotes
• F other formatting problem

[coveralls]

coverage: 85.567% (-0.006%) from 85.573%
when pulling 6ec7b4f on issues/hannes-ucsc/6441-expired-manifest
into 1db6db7 on develop.

[coveralls]

coverage: 85.573% (+0.006%) from 85.567%
when pulling f2b6ac4 on issues/hannes-ucsc/6441-expired-manifest
into 50251cf on develop.

[codecov]

Codecov Report

Attention: Patch coverage is 87.71429% with 43 lines in your changes missing coverage. Please review.

Project coverage is 85.55%. Comparing base (1db6db7) to head (6ec7b4f).

Files with missing lines	Patch %	Lines
test/integration_test.py	0.00%	39 Missing ⚠️
src/azul/service/manifest_controller.py	94.73%	2 Missing ⚠️
src/azul/__init__.py	66.66%	1 Missing ⚠️
src/azul/service/async_manifest_service.py	96.66%	1 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #6760      +/-   ##
===========================================
- Coverage    85.55%   85.55%   -0.01%     
===========================================
  Files          153      153              
  Lines        21005    21170     +165     
===========================================
+ Hits         17971    18111     +140     
- Misses        3034     3059      +25     

☔ View full report in Codecov by Sentry.
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[hannes-ucsc]

Security design review

• Security design review completed; this PR does not …
  • … affect authentication; for example:
    • OAuth 2.0 with the application (API or Swagger UI)
    • Authentication of developers with Google Cloud APIs
    • Authentication of developers with AWS APIs
    • Authentication with a GitLab instance in the system
    • Password and 2FA authentication with GitHub
    • API access token authentication with GitHub
    • Authentication with Terra
  • … affect the permissions of internal users like access to
    • Cloud resources on AWS and GCP
    • GitLab repositories, projects and groups, administration
    • an EC2 instance via SSH
    • GitHub issues, pull requests, commits, commit statuses, wikis, repositories, organizations
  • … affect the permissions of external users like access to
    • TDR snapshots
  • … affect permissions of service or bot accounts
    • Cloud resources on AWS and GCP
  • … affect audit logging in the system, like
    • adding, removing or changing a log message that represents an auditable event
    • changing the routing of log messages through the system
  • … affect monitoring of the system
  • … introduce a new software dependency like
    • Python packages on PYPI
    • Command-line utilities
    • Docker images
    • Terraform providers
  • … add an interface that exposes sensitive or confidential data at the security boundary
  • … affect the encryption of data at rest
  • … require persistence of sensitive or confidential data that might require encryption at rest
  • … require unencrypted transmission of data within the security boundary
  • … affect the network security layer; for example by
    • modifying, adding or removing firewall rules
    • modifying, adding or removing security groups
    • changing or adding a port a service, proxy or load balancer listens on
• Documentation on any unchecked boxes is provided in comments below

[achave11-ucsc]

Pro forma approval.