Many HPC batch systems stopped working due to `walltime` in `prepareSubmission` signature

[adamnovak]

As noted in #5576 (comment), we recently added walltime to the AbstractGridEngineBatchSystem prepareSubmission signature:

toil/src/toil/batchSystems/abstractGridEngineBatchSystem.py

Lines 362 to 373 in 478b287

	@abstractmethod
	def prepareSubmission(
	self,
	cpu: int,
	memory: int,
	walltime: int,
	jobID: int,
	command: str,
	jobName: str,
	job_environment: dict[str, str] | None = None,
	gpus: int | None = None,
	) -> list[str]:

But we didn't either add it to or override the methods that call prepareSubmission in all the implementations. For example:

toil/src/toil/batchSystems/htcondor.py

Lines 108 to 117 in 478b287

	def prepareSubmission(
	self,
	cpu: int,
	memory: int,
	disk: int,
	jobID: int,
	jobName: str,
	command: str,
	environment: dict[str, str],
	) -> htcondor.Submit:

We need to do that or those batch systems won't actually work.

If we got type checking working for all the batch systems, this kind of issue wouldn't happen.

┆Issue is synchronized with this Jira Story
┆Issue Number: TOIL-1864