Optimization for ru vine construction #113
Workflow file for this run
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| name: Build, test | |
| on: | |
| [pull_request,workflow_dispatch,push] | |
| jobs: | |
| build_test: | |
| name: Build and Test | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| os: ["ubuntu-latest", "macos-13", "macos-14",] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| mamba-version: "1.5" | |
| activate-environment: build_test_env | |
| channels: conda-forge | |
| channel-priority: true | |
| - name: Install build and test dependencies | |
| shell: bash -el {0} | |
| run: | | |
| # conda install mamba -c conda-forge | |
| mamba install python=${{matrix.python-version}} pip -c conda-forge | |
| mamba install boost-cpp gudhi=3.10 numpy=2 pot cython=3 pytest scikit-learn matplotlib boost joblib tqdm scipy tbb tbb-devel -c conda-forge | |
| pip install pykeops filtration-domination --upgrade | |
| if [[ ${{ matrix.os }} =~ "ubuntu-".* ]]; then | |
| mamba install cxx-compiler -c conda-forge | |
| fi | |
| if [[ ${{ matrix.os }} =~ "windows-".* ]]; then | |
| mamba install cxx-compiler -c conda-forge | |
| fi | |
| - name: Build package | |
| shell: bash -el {0} | |
| run: | | |
| if [[ ${{ matrix.os }} =~ "macos-".* ]]; then | |
| export CXXFLAGS="-fno-aligned-new" # Macos workaround | |
| export CFLAGS="-fno-aligned-new" # Macos workaround | |
| export MACOSX_DEPLOYMENT_TARGET="13.0" | |
| fi | |
| if [[ ${{ matrix.os }} =~ "ubuntu-".* ]]; then | |
| export CXXFLAGS="-march=x86-64-v3" # post haswell, for avx | |
| export CFLAGS="-march=x86-64-v3" | |
| export CPPFLAGS="-isystem $CONDA_PREFIX/include" | |
| fi | |
| if [[ ${{ matrix.os }} =~ "windows-".* ]]; then | |
| set LIBPATH=%LIBPATH%;C:\Miniconda\envs\build_test_env\Library\lib | |
| fi | |
| python setup.py build_ext -j4 --inplace bdist_wheel | |
| - name: Install and Test | |
| shell: bash -el {0} | |
| run: | | |
| pip install --no-build-isolation dist/*.whl | |
| pytest multipers/tests |