Build, test, and Push to PyPI #227
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| # This workflow will upload a Python Package using Twine when a release is created | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries | |
| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| name: Build, test, and Push to PyPI | |
| on: | |
| [workflow_dispatch] | |
| jobs: | |
| build_test: | |
| name: Build and Test | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| os: ["ubuntu-latest", "macos-13", "macos-14"] # windows fails, macos13 is x86_64 and macos-latest=14 is arm64 | |
| # monitor https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners/about-github-hosted-runners#standard-github-hosted-runners-for-public-repositories | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| micromamba-version: 'latest' | |
| init-shell: >- | |
| bash | |
| powershell | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - name: Install build and test dependencies | |
| shell: bash -el {0} | |
| run: | | |
| micromamba create -n build python=${{matrix.python-version}} pip -c conda-forge | |
| micromamba activate build | |
| micromamba install boost-cpp 'gudhi>=3.10' 'numpy>=2' pot 'cython>=3' pytest scikit-learn matplotlib boost joblib tqdm scipy tbb tbb-devel -c conda-forge | |
| pip install pykeops filtration-domination --upgrade | |
| # tbb, boost are installed in the conda env: sets some variables. | |
| micromamba install c-compiler=1.6 cxx-compiler=1.6 -c conda-forge | |
| - name: Build package | |
| shell: bash -el {0} | |
| run: | | |
| micromamba activate build | |
| python setup.py sdist | |
| if [[ ${{ matrix.os }} =~ "macos-".* ]]; then | |
| export CXXFLAGS="-fno-aligned-new" # Macos workaround | |
| export CFLAGS="-fno-aligned-new" # Macos workaround | |
| ## should compile for both architecture | |
| ## initialize below ? | |
| export MACOSX_DEPLOYMENT_TARGET="13.0" | |
| # export _PYTHON_HOST_PLATFORM="macosx-13.0-universal2" | |
| fi | |
| if [[ ${{ matrix.os }} =~ "ubuntu-".* ]]; then | |
| export CXXFLAGS="-march=x86-64-v3" # post haswell, for avx | |
| export CFLAGS="-march=x86-64-v3" | |
| fi | |
| python setup.py build_ext -j4 --inplace bdist_wheel | |
| - name: Fix wheels on Linux and Macos | |
| shell: bash -el {0} | |
| run: | | |
| micromamba activate build | |
| cd dist | |
| if [[ ${{ matrix.os }} =~ "ubuntu-".* ]]; then | |
| micromamba install auditwheel patchelf | |
| for wheel_file in multipers*linux*.whl; do | |
| auditwheel show $wheel_file | |
| auditwheel repair $wheel_file --plat manylinux_2_34_x86_64 | |
| rm $wheel_file | |
| done | |
| fi | |
| if [[ ${{ matrix.os }} == "macos-13" ]]; then | |
| micromamba install delocate | |
| for wheel_file in multipers*macosx*x86*.whl; do | |
| delocate-listdeps $wheel_file | |
| delocate-wheel --require-archs x86_64 -w wheelhouse -v $wheel_file | |
| rm $wheel_file | |
| done | |
| fi | |
| if [[ ${{ matrix.os }} == "macos-14" ]]; then | |
| pip install delocate --upgrade | |
| for wheel_file in multipers*macosx*arm64*.whl; do | |
| delocate-listdeps $wheel_file | |
| delocate-wheel --require-archs arm64 -w wheelhouse -v $wheel_file | |
| rm $wheel_file | |
| done | |
| fi | |
| mv wheelhouse/*.whl . # retrieves repaired wheels | |
| cd .. | |
| - name: Install and Test | |
| shell: bash -el {0} | |
| run: | | |
| # Fresh env | |
| micromamba create -n test python=${{matrix.python-version}} pip pytest -c conda-forge | |
| micromamba activate test | |
| pip install dist/*.whl --force-reinstall | |
| pytest multipers/tests | |
| - name: Upload sources and wheel | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: sources | |
| path: dist | |
| send_to_pypi: | |
| name: Send sources and wheels | |
| runs-on: ubuntu-latest | |
| needs: [ build_test ] | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: sources | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Publish to PyPI | |
| env: | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }} | |
| run: | | |
| pip install --upgrade pip twine | |
| twine upload --skip-existing *.tar.gz # sources | |
| twine upload --skip-existing *.whl # wheels |