check which repo is used and load the right module

EESSI · Apr 25, 2024 · 275853a · 275853a
1 parent 30b79d7
commit 275853a
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/Bioconductor/run.sh b/Bioconductor/run.sh
@@ -1,5 +1,9 @@
 #!/bin/bash
+set -e
 
-module load R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0
+if [[ $EESSI_CVMFS_REPO == "/cvmfs/software.eessi.io" ]] && [[ $EESSI_VERSION == "2023.06" ]]; then module load R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2
+elif [[ $EESSI_CVMFS_REPO == "/cvmfs/pilot.eessi-hpc.org" ]] && [[ $EESSI_PILOT_VERSION == "2021.12" ]]; then module load R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0
+else echo "Don't know which Bioconductor module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}$EESSI_PILOT_VERSION" >&2; exit 1
+fi
 
 time Rscript dna.R