Merge pull request #37 from ocaisa/pilot_cleanout

Remove all references to the pilot repository

.github/workflows/pilot_repo_native.yml → .github/workflows/software_repo_native.yml

@@ -1,10 +1,10 @@
 # documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions
-name: Tests for EESSI pilot repo (native access)
+name: Tests for EESSI software repo (native access)
 on: [push, pull_request, workflow_dispatch]
 # Declare default permissions as read only.
 permissions: read-all
 jobs:
-  pilot_repo_native:
+  software_repo_native:
     runs-on: ubuntu-20.04
     strategy:
       fail-fast: false
@@ -14,25 +14,25 @@ jobs:
         - GROMACS
         - OpenFOAM
         - TensorFlow
+        - ESPResSo
         EESSI_VERSION:
-        - "2021.06"
-        - "2021.12"
+        - "2023.06"
     steps:
         - name: Check out software-layer repository
           uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
           with:
             persist-credentials: false
 
-        - name: Mount EESSI CernVM-FS pilot repository
+        - name: Mount EESSI CernVM-FS software repository
           uses: cvmfs-contrib/github-action-cvmfs@55899ca74cf78ab874bdf47f5a804e47c198743c # v4.0
           with:
               cvmfs_config_package: https://github.com/EESSI/filesystem-layer/releases/download/latest/cvmfs-config-eessi_latest_all.deb
               cvmfs_http_proxy: DIRECT
-              cvmfs_repositories: pilot.eessi-hpc.org
+              cvmfs_repositories: software.eessi.io
 
         - name: Run demo
           run: |
-              source /cvmfs/pilot.eessi-hpc.org/versions/${{matrix.EESSI_VERSION}}/init/bash
+              source /cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}/init/bash
               cd ${{matrix.EESSI_DEMO}}
               pwd
               ./run.sh

Bioconductor/run.sh

@@ -2,8 +2,7 @@
 set -e
 
 if [[ $EESSI_CVMFS_REPO == "/cvmfs/software.eessi.io" ]] && [[ $EESSI_VERSION == "2023.06" ]]; then module load R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2
-elif [[ $EESSI_CVMFS_REPO == "/cvmfs/pilot.eessi-hpc.org" ]] && [[ $EESSI_PILOT_VERSION == "2021.12" ]]; then module load R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0
-else echo "Don't know which Bioconductor module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}$EESSI_PILOT_VERSION" >&2; exit 1
+else echo "Don't know which Bioconductor module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}" >&2; exit 1
 fi
 
 time Rscript dna.R

ESPResSo/run.sh

@@ -5,7 +5,7 @@ if [[ $EESSI_CVMFS_REPO == "/cvmfs/software.eessi.io" ]] && [[ $EESSI_VERSION ==
     module load ESPResSo/4.2.1-foss-2023a 
     module load matplotlib/3.7.2-gfbf-2023a
     module load PyQt5/5.15.10-GCCcore-12.3.0
-else echo "Don't know which ESPResSo module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}$EESSI_PILOT_VERSION" >&2; exit 1
+else echo "Don't know which ESPResSo module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}" >&2; exit 1
 fi
 
 echo generating plate_capacitor_before.png and plate_capacitor_after.png ...

GROMACS/run.sh

@@ -2,8 +2,7 @@
 set -e
 
 if [[ $EESSI_CVMFS_REPO == "/cvmfs/software.eessi.io" ]] && [[ $EESSI_VERSION == "2023.06" ]]; then module load GROMACS/2024.1-foss-2023b
-elif [[ $EESSI_CVMFS_REPO == "/cvmfs/pilot.eessi-hpc.org" ]] && [[ $EESSI_PILOT_VERSION == "2021.12" ]]; then module load GROMACS/2020.1-foss-2020a-Python-3.8.2
-else echo "Don't know which GROMACS module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}$EESSI_PILOT_VERSION" >&2; exit 1
+else echo "Don't know which GROMACS module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}" >&2; exit 1
 fi
 
 if [ ! -f GROMACS_TestCaseA.tar.gz ]; then