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Update single-user-sobigdata with conda-lock #236

Update single-user-sobigdata with conda-lock

Update single-user-sobigdata with conda-lock #236

---
name: Build and push d4science containers
on:
push:
# only pushes on master so we don't push intermediate results to dockerhub
branches:
- master
pull_request:
jobs:
detect-changes:
uses: ./.github/workflows/build-list.yml
with:
base: d4science-base/Dockerfile
images: |
"single-user-d4science/Dockerfile"
"single-user-sobigdata/Dockerfile"
"single-user-3d-d4science/Dockerfile"
"single-user-r-d4science/Dockerfile"
"single-user-scientometrics-d4science/Dockerfile"
"single-user-sobigdata-lipari23/Dockerfile"
"single-user-sobigdata-aaai24/Dockerfile"
user-images:
name: Build and push images
if: fromJson(needs.detect-changes.outputs.matrix).image
needs: [detect-changes]
runs-on: ubuntu-latest
strategy:
matrix: ${{ fromJson(needs.detect-changes.outputs.matrix) }}
steps:
- name: try to make free space
run: |
sudo rm -rf /usr/share/dotnet
sudo rm -rf /usr/local/lib/android
sudo rm -rf /opt/ghc
- name: Checkout
uses: actions/checkout@v4
- name: Docker meta
id: docker_meta
uses: docker/metadata-action@v5
with:
images: eginotebooks/${{ matrix.image }}
tags: |
type=sha
- name: Set up QEMU
uses: docker/setup-qemu-action@v3
- name: Login to DockerHub
uses: docker/login-action@v3
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_TOKEN }}
if: github.event_name != 'pull_request'
# Unfortunately I haven't been able to load an prebuilt image here
# so not using the build-push-action from docker
# it's missing the labels and assumes tags is just one
- name: Build full image
run: |
docker build \
--tag ${{ steps.docker_meta.outputs.tags }} \
--tag eginotebooks/${{ matrix.image }}:latest \
${{ matrix.image }}
- name: Push full image
run: |
docker push ${{ steps.docker_meta.outputs.tags }}
docker push eginotebooks/${{ matrix.image }}:latest
if: ${{ github.event_name != 'pull_request' }}
- uses: addnab/docker-run-action@v3
with:
image: ${{ steps.docker_meta.outputs.tags }}
options: -v ${{ github.workspace }}/${{ matrix.image }}:/image-data
run: |
for f in /image-data/tests/*.ipynb; do
if [ -e "$f" ]; then
jupyter nbconvert --ExecutePreprocessor.timeout=600 --to rst \
--execute --stdout $f || exit 1
else
true
fi
done