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* introduce a CI test that checks whether any input files in MOM_input is missing in input_data_list * minor changes in check_input_data_list * fix param_templates paths * minor improvement in check_input_data_list filter function * more improvements in check_input_data_list filter function * major check_input_data_list.py refactor and introduction of check_input_data_repo.py * fix general-ci-tests.yaml * take 2: fix general-ci-tests.yaml * add all missing input_data_list entries
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,56 +1,67 @@ | ||
| # The list of input files to be checked out from inputdata | ||
| --- | ||
| mom.input_data_list: | ||
| ocean_hgrid: | ||
| GRID_FILE: | ||
| $OCN_GRID == "tx2_3v2": "${INPUTDIR}/ocean_hgrid_221123.nc" | ||
| $OCN_GRID == "tx0.25v1": "${INPUTDIR}/ocean_hgrid.nc" | ||
| ocean_vgrid1: | ||
| $OCN_GRID == "tx2_3v2": "${INPUTDIR}/vgrid_65L_20200626.nc" | ||
| ALE_COORDINATE_CONFIG: | ||
| $MOM6_VERTICAL_GRID == "zstar_75L": "${INPUTDIR}/zstar_75layer_2.5m_248.4m-2024-03-29.nc" | ||
| $MOM6_VERTICAL_GRID == "zstar_65L": "${INPUTDIR}/vgrid_65L_20200626.nc" | ||
| $MOM6_VERTICAL_GRID == "hycom1" and $OCN_GRID != "tx0.25v1": "${INPUTDIR}/hybrid_75layer_zstar2.50m-2020-11-23.nc" | ||
| $MOM6_VERTICAL_GRID == "hycom1" and $OCN_GRID == "tx0.25v1": "${INPUTDIR}/hycom1_75_800m.nc" | ||
| $OCN_GRID == "tx0.25v1": "${INPUTDIR}/hycom1_75_800m.nc" | ||
| ocean_vgrid2: | ||
| DIAG_COORD_DEF_Z: | ||
| $OCN_GRID == "tx0.25v1": "${INPUTDIR}/interpolate_zgrid_40L.nc" | ||
| ocean_vgrid3: | ||
| COORD_FILE: | ||
| $OCN_GRID == "tx0.25v1": "${INPUTDIR}/layer_coord.nc" | ||
| ocean_topog: | ||
| $OCN_GRID == "tx2_3v2": "${INPUTDIR}/ocean_topog_230413.nc" | ||
| TOPO_FILE: | ||
| $OCN_GRID == "tx2_3v2": "${INPUTDIR}/ocean_topo_tx2_3v2_240501.nc" | ||
| $OCN_GRID == "tx0.25v1": "${INPUTDIR}/ocean_topog.nc" | ||
| ocean_topo_edit: | ||
| TOPO_EDITS_FILE: | ||
| $OCN_GRID == "tx0.25v1": "${INPUTDIR}/All_edits.nc" | ||
| tempsalt: | ||
| TEMP_SALT_Z_INIT_FILE: | ||
| $OCN_GRID in ["tx2_3v2", "tx0.25v1"]: | ||
| $INIT_LAYERS_FROM_Z_FILE == "True": | ||
| "${INPUTDIR}/${TEMP_SALT_Z_INIT_FILE}" | ||
| saltrestore: | ||
| MAX_LAYER_THICKNESS_CONFIG: | ||
| $MOM6_VERTICAL_GRID == "hycom1" and $OCN_GRID in ["tx2_3v2"]: | ||
| "${DIN_LOC_ROOT}/ocn/mom/grid_indpt/dz_max_90th_quantile.nc" | ||
| SURFACE_PRESSURE_FILE: | ||
| $OCN_GRID == "MISOMIP": "${INPUTDIR}/MISOMIP_181108.nc" | ||
| SALT_RESTORE_FILE: | ||
| $OCN_GRID == "tx2_3v2": "${INPUTDIR}/state_restore_tx2_3_20230416.nc" | ||
| tidal: | ||
| TIDAL_ENERGY_FILE: | ||
| $OCN_GRID == "tx2_3v2": "${INPUTDIR}/energy_new_tx2_3_conserve_230415_cdf5.nc" | ||
| $OCN_GRID == "tx0.25v1": "${INPUTDIR}/tidal_amplitude.v20140616.nc" | ||
| ocean_channel: | ||
| CHANNEL_LIST_FILE: | ||
| $OCN_GRID == "tx2_3v2": "${INPUTDIR}/MOM_channels_global_tx2_3v2_240501" | ||
| $OCN_GRID == "tx0.25v1": "${INPUTDIR}/MOM_channels_global_025" | ||
| ocean_geothermal: | ||
| GEOTHERMAL_FILE: | ||
| $OCN_GRID == "tx2_3v2": "${INPUTDIR}/geothermal_davies2013_tx2_3_20240318_cdf5.nc" | ||
| $OCN_GRID == "tx0.25v1": "${INPUTDIR}/geothermal_davies2013_v1.nc" | ||
| ocean_seaw: | ||
| CHL_FILE: | ||
| $OCN_GRID == "tx0.25v1": "${INPUTDIR}/seawifs-clim-1997-2010.1440x1080.v20180328.nc" | ||
| $OCN_GRID == "tx2_3v2": "${INPUTDIR}/seawifs-clim-1997-2010-tx2_3v2.230416.nc" | ||
| cfcs_forcing: "${DIN_LOC_ROOT}/ocn/mom/grid_indpt/cfc_atm_20230310.nc" | ||
| diag_coord_def_rho2: | ||
| CFC_BC_FILE: "${DIN_LOC_ROOT}/ocn/mom/grid_indpt/cfc_atm_20230310.nc" | ||
| DIAG_COORD_DEF_RHO2: | ||
| $OCN_GRID == "tx2_3v2": "${INPUTDIR}/ocean_rho2_190917.nc" | ||
| marbl_tracers_ic_file: | ||
| $MARBL_CONFIG == "latest": "${INPUTDIR}/ecosys_jan_IC_omip_latlon_1x1_180W_c231221.nc" | ||
| MARBL_TRACERS_IC_FILE: | ||
| $MARBL_CONFIG == "latest": "${INPUTDIR}/ecosys_jan_IC_omip_latlon_1x1_180W_c230331.nc" | ||
| $MARBL_CONFIG == "latest+4p2z": "${INPUTDIR}/ecosys_jan_IC_omip_latlon_1x1_180W_c231221.nc" | ||
| marbl_fesedflux_file: | ||
| MARBL_FESEDFLUX_FILE: | ||
| '"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS': | ||
| $OCN_GRID == "tx2_3v2": "${INPUTDIR}/fesedflux_total_reduce_oxic_tx2_3v2.c231205.nc" | ||
| marbl_feventflux_file: | ||
| MARBL_FEVENTFLUX_FILE: | ||
| '"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS': | ||
| $OCN_GRID == "tx2_3v2": "${INPUTDIR}/feventflux_5gmol_tx2_3v2.c231205.nc" | ||
| riv_flux_file: | ||
| RIV_FLUX_FILE: | ||
| '"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS': | ||
| '$ROF_GRID == "JRA025" and $OCN_GRID == "tx2_3v2"': "${INPUTDIR}/riv_nut.gnews_gnm.rJRA025_to_tx2_3v2_nnsm_e333r100_230415.20240202.nc" | ||
| '$ROF_GRID == "r05" and $OCN_GRID == "tx2_3v2"': "${INPUTDIR}/riv_nut.gnews_gnm.r05_to_tx2_3v2_nnsm_e250r250_230914.20240202.nc" | ||
| d14c_file_1: | ||
| MARBL_D14C_FILE_1: | ||
| '"ABIO_DIC_ON=TRUE" in $MARBL_TRACER_OPTS': "${DIN_LOC_ROOT}/ocn/mom/grid_indpt/atm_delta_C14_CMIP6_sector1_global_1850-2015_yearly_v2.0_c240202.nc" | ||
| d14c_file_2: | ||
| MARBL_D14C_FILE_2: | ||
| '"ABIO_DIC_ON=TRUE" in $MARBL_TRACER_OPTS': "${DIN_LOC_ROOT}/ocn/mom/grid_indpt/atm_delta_C14_CMIP6_sector2_global_1850-2015_yearly_v2.0_c240202.nc" | ||
| d14c_file_3: | ||
| MARBL_D14C_FILE_3: | ||
| '"ABIO_DIC_ON=TRUE" in $MARBL_TRACER_OPTS': "${DIN_LOC_ROOT}/ocn/mom/grid_indpt/atm_delta_C14_CMIP6_sector3_global_1850-2015_yearly_v2.0_c240202.nc" | ||
| ... |
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