PanAnd Genome Evolution 🌽 🌾

For co-authors (click to expand)

panand genome evolution paper related scripts and workflows

Please follow this structure for your contribution.

1. Place all scripts related to a specific task inside a folder with an appropriately chosen name (e.g., genome-assembly). Use hyphens to separate words and utilize all lowercase letters (if feasible).

2. Include a README.md file within the folder, explicitly detailing the employed programs, their order in the workflow, necessary inputs, and the corresponding scripts used.

3. Create a sub-folder for figures, and store both the source code and the associated png/pdf/tiff files within it. If the file size is small, you may also put the input data in this sub-folder.

4. Place all mentioned scripts from the README.md and any input files (with a size smaller than <1Mb) into an assets sub-directory. Similarly, anything that doesn't qualify as a script or input should also go here.

5. After finalizing your section, ensure to link the README.md file in the table of contents with an appropriate title for your section.

6. Feel free to reach out if you have any questions or suggestions!

Table of contents:

1. Genome assembly methods
2. Quality control
3. Gene prediction and annotation
4. Repeat annotation
5. Orthology prediction

Figures/Plots

Links for external data

Citation

Contacts

Please check our contributions page for all the authors who worked on this GitHub documentation (and the sections they worked on!).