Fix autogenerated links to OpenMPI docs #1360

Workflow file for this run

.github/workflows/UnitTests.yml at 84f8a3c

	# name: Unit Tests

	# on:
	# pull_request:
	# paths:
	# - '.github/workflows/UnitTests.yml'
	# - 'bin/**'
	# - 'deps/**'
	# - 'src/**'
	# - 'test/**'
	# - 'lib/**'
	# push:
	# branches:
	# - master
	# - release-*
	# paths:
	# - '.github/workflows/UnitTests.yml'
	# - 'bin/**'
	# - 'deps/**'
	# - 'src/**'
	# - 'test/**'
	# - 'lib/**'

	# concurrency:
	# # Skip intermediate builds: always.
	# # Cancel intermediate builds: always.
	# group: ${{ github.workflow }}-${{ github.ref }}
	# cancel-in-progress: true

	# jobs:
	# test-default:
	# timeout-minutes: 20
	# strategy:
	# matrix:
	# os:
	# - macos-13
	# - ubuntu-latest
	# - windows-latest
	# julia_version:
	# - "1.6"
	# - "1"
	# - "nightly"
	# julia_arch: [x64, x86]
	# exclude:
	# - os: macos-13
	# julia_arch: x86
	# include:
	# - os: macos-14
	# julia_arch: "aarch64"
	# julia_version: "1"

	# fail-fast: false

	# runs-on: ${{ matrix.os }}

	# steps:
	# - name: Checkout
	# uses: actions/checkout@v4

	# - uses: julia-actions/setup-julia@v1
	# with:
	# arch: ${{ matrix.julia_arch }}
	# version: ${{ matrix.julia_version }}
	# - uses: julia-actions/cache@v2

	# - name: add MPIPreferences
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")

	# - uses: julia-actions/julia-runtest@v1
	# - uses: julia-actions/julia-processcoverage@v1
	# - uses: codecov/codecov-action@v4
	# with:
	# token: ${{ secrets.CODECOV_TOKEN }}
	# files: lcov.info
	# - uses: julia-actions/julia-uploadcoveralls@v1
	# continue-on-error: true
	# env:
	# COVERALLS_TOKEN: ${{ secrets.COVERALLS_TOKEN }}

	# test-openmpi-jll:
	# timeout-minutes: 20
	# strategy:
	# matrix:
	# os:
	# - macos-13
	# - ubuntu-latest
	# julia_version:
	# - "1.6"
	# - "1"
	# - "nightly"
	# julia_arch: [x64, x86]
	# exclude:
	# - os: macos-13
	# julia_arch: x86

	# fail-fast: false
	# env:
	# JULIA_MPI_TEST_BINARY: OpenMPI_jll
	# JULIA_MPI_TEST_ABI: OpenMPI
	# OMPI_MCA_btl_base_warn_component_unused: 0
	# OMPI_MCA_rmaps_base_oversubscribe: true

	# runs-on: ${{ matrix.os }}

	# steps:
	# - name: Checkout
	# uses: actions/checkout@v4

	# - uses: julia-actions/setup-julia@v1
	# with:
	# arch: ${{ matrix.julia_arch }}
	# version: ${{ matrix.julia_version }}
	# - uses: julia-actions/cache@v2

	# - name: add MPIPreferences
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")

	# - name: use OpenMPI_jll
	# shell: julia --color=yes --project=test {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")
	# using MPIPreferences
	# MPIPreferences.use_jll_binary("OpenMPI_jll", export_prefs=true)
	# rm("test/Manifest.toml")

	# - uses: julia-actions/julia-runtest@v1

	# test-system-brew:
	# timeout-minutes: 20
	# strategy:
	# matrix:
	# os:
	# - macos-13
	# - macos-14
	# mpi:
	# - mpich
	# - openmpi
	# julia_version:
	# - "1"
	# julia_arch:
	# - "x64"
	# - "aarch64"
	# exclude:
	# - os: macos-13
	# julia_arch: "aarch64"
	# - os: macos-14
	# julia_arch: "x64"

	# fail-fast: false

	# runs-on: ${{ matrix.os }}
	# env:
	# JULIA_MPI_TEST_BINARY: system
	# ZES_ENABLE_SYSMAN: 1 # https://github.com/open-mpi/ompi/issues/10142

	# steps:
	# - name: Checkout
	# uses: actions/checkout@v4

	# - name: Install MPI via homebrew
	# run: \|
	# brew install "${{ matrix.mpi }}"

	# - uses: julia-actions/setup-julia@v1
	# with:
	# version: ${{ matrix.julia_version }}
	# arch: ${{ matrix.julia_arch }}

	# - uses: julia-actions/cache@v2
	# - name: add MPIPreferences
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")

	# - name: use system MPI
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using MPIPreferences
	# mpi_prefix = readchomp(`brew --prefix ${{ matrix.mpi }}`)
	# libdir = joinpath(mpi_prefix, "lib")
	# MPIPreferences.use_system_binary(; extra_paths=[libdir])

	# - uses: julia-actions/julia-runtest@v1
	# env:
	# # TODO: Only disable this test for MPICH. OpenMPI works fine.
	# JULIA_MPI_TEST_DISABLE_REDUCE_ON_APPLE: 1


	# test-system-apt:
	# timeout-minutes: 20
	# strategy:
	# matrix:
	# mpi:
	# - libmpich-dev
	# - libopenmpi-dev
	# julia_version:
	# - "1"

	# fail-fast: false

	# runs-on: ubuntu-20.04

	# env:
	# JULIA_MPI_TEST_BINARY: system
	# OMPI_MCA_btl_base_warn_component_unused: 0
	# OMPI_MCA_rmaps_base_oversubscribe: true

	# steps:
	# - name: Checkout
	# uses: actions/checkout@v4

	# - name: Install MPI via apt
	# run: \|
	# sudo apt-get update
	# sudo apt-get install $MPI
	# env:
	# MPI: ${{ matrix.mpi }}

	# - uses: julia-actions/setup-julia@v1
	# with:
	# version: ${{ matrix.julia_version }}

	# - uses: julia-actions/cache@v2
	# - name: add MPIPreferences
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")

	# - name: use system MPI
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using MPIPreferences
	# MPIPreferences.use_system_binary()

	# - uses: julia-actions/julia-runtest@v1

	# test-intel-linux:
	# timeout-minutes: 20
	# strategy:
	# matrix:
	# include:
	# - container: ghcr.io/juliaparallel/github-actions-buildcache:intel-mpi-jq
	# name: "Intel MPI 2019.9.304"
	# - container: ghcr.io/juliaparallel/github-actions-buildcache:intel-oneapi-mpi-jq
	# name: "Intel oneAPI MPI 2021.11.0"

	# fail-fast: false

	# runs-on: ubuntu-latest
	# container: ${{ matrix.container }}
	# name: "Test ${{ matrix.name }}"

	# env:
	# JULIA_MPI_TEST_BINARY: system
	# JULIA_MPI_TEST_ABI: MPICH

	# steps:
	# - name: Checkout
	# uses: actions/checkout@v4

	# - uses: julia-actions/setup-julia@v1
	# with:
	# version: "1"

	# - uses: julia-actions/cache@v2
	# - name: add MPIPreferences
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")

	# - name: use system MPI
	# run: \|
	# julia --color=yes --project=. -e '
	# using MPIPreferences
	# MPIPreferences.use_system_binary()'

	# - uses: julia-actions/julia-runtest@v1


	# test-system-msmpi:
	# timeout-minutes: 20
	# strategy:
	# matrix:
	# julia_version:
	# - "1"

	# fail-fast: false

	# runs-on: windows-latest

	# steps:
	# - name: Checkout
	# uses: actions/checkout@v4

	# - name: Download Microsoft MPI
	# run: (new-object net.webclient).DownloadFile("https://download.microsoft.com/download/a/5/2/a5207ca5-1203-491a-8fb8-906fd68ae623/msmpisetup.exe", "msmpisetup.exe")
	# shell: powershell

	# - name: Install Microsoft MPI
	# run: msmpisetup.exe -unattend -minimal
	# shell: cmd

	# - uses: julia-actions/setup-julia@v1
	# with:
	# version: ${{ matrix.julia_version }}

	# - uses: julia-actions/cache@v2
	# - name: add MPIPreferences
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")

	# - name: add MPIPreferences, use system
	# shell: julia --color=yes --project=test {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")
	# using MPIPreferences
	# MPIPreferences.use_system_binary(;
	# export_prefs=true,
	# mpiexec="C:\\Program Files\\Microsoft MPI\\Bin\\mpiexec"
	# )
	# rm("test/Manifest.toml")

	# - uses: julia-actions/julia-runtest@v1


	# test-mpitrampoline-jll:
	# timeout-minutes: 20
	# strategy:
	# matrix:
	# os:
	# - macos-13
	# - ubuntu-latest
	# mpi: [mpitrampoline]
	# julia_version:
	# - "1.6"
	# - "1"
	# - "nightly"
	# julia_arch:
	# - x64
	# - x86
	# exclude:
	# - os: macos-13
	# julia_arch: x86

	# fail-fast: false

	# runs-on: ${{ matrix.os }}
	# env:
	# JULIA_MPI_TEST_BINARY: MPItrampoline_jll
	# JULIA_MPI_TEST_ABI: MPItrampoline

	# steps:
	# - name: Checkout
	# uses: actions/checkout@v4

	# - uses: julia-actions/setup-julia@v1
	# with:
	# version: ${{ matrix.julia_version }}

	# - uses: julia-actions/cache@v2

	# - name: add MPIPreferences
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")

	# - name: use MPItrampoline_jll
	# shell: julia --color=yes --project=test {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")
	# using MPIPreferences
	# MPIPreferences.use_jll_binary("MPItrampoline_jll", export_prefs=true)
	# rm("test/Manifest.toml")

	# - uses: julia-actions/julia-runtest@v1


	# test-mpitrampoline-system-apt:
	# timeout-minutes: 20
	# strategy:
	# matrix:
	# mpi:
	# - libmpich-dev
	# - libopenmpi-dev
	# julia_version:
	# - "1"
	# # We don't need to test all combinations
	# # - "1.7"
	# # - "nightly"
	# MPIWrapper:
	# - "2.11.0"

	# fail-fast: false

	# runs-on: ubuntu-20.04

	# env:
	# JULIA_MPI_TEST_BINARY: MPItrampoline_jll
	# JULIA_MPI_TEST_ABI: MPItrampoline
	# MPITRAMPOLINE_LIB: /usr/local/lib/libmpiwrapper.so
	# MPITRAMPOLINE_MPIEXEC: /usr/bin/mpiexec
	# OMPI_MCA_btl_base_warn_component_unused: 0
	# OMPI_MCA_rmaps_base_oversubscribe: true

	# steps:
	# - name: Checkout
	# uses: actions/checkout@v4

	# - name: Install MPI via apt
	# run: \|
	# sudo apt-get update
	# sudo apt-get install $MPI
	# env:
	# MPI: ${{ matrix.mpi }}

	# - name: Build MPIwrapper
	# run: \|
	# wget https://github.com/eschnett/MPIwrapper/archive/refs/tags/v${MPIWrapper}.tar.gz
	# tar xzf v${MPIWrapper}.tar.gz
	# cd MPIwrapper-*
	# cmake -DMPIEXEC_EXECUTABLE=mpiexec -DCMAKE_BUILD_TYPE=Debug -DCMAKE_INSTALL_PREFIX=/usr/local .
	# cmake --build .
	# sudo cmake --install .
	# env:
	# MPIWrapper: ${{matrix.MPIWrapper}}

	# - uses: julia-actions/setup-julia@v1
	# with:
	# version: ${{ matrix.julia_version }}

	# - uses: julia-actions/cache@v2

	# - name: add MPIPreferences
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")

	# - name: use MPItrampoline_jll
	# shell: julia --color=yes --project=test {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")
	# using MPIPreferences
	# MPIPreferences.use_jll_binary("MPItrampoline_jll", export_prefs=true)
	# rm("test/Manifest.toml")

	# - uses: julia-actions/julia-runtest@v1


	# test-mpitrampoline-oneapi-linux:
	# timeout-minutes: 20
	# strategy:
	# matrix:
	# julia_version:
	# - "1"
	# MPIWrapper:
	# - "2.11.0"

	# fail-fast: false

	# runs-on: ubuntu-latest
	# container: ghcr.io/juliaparallel/github-actions-buildcache:intel-oneapi-mpi-jq

	# env:
	# JULIA_MPI_TEST_BINARY: MPItrampoline_jll
	# JULIA_MPI_TEST_ABI: MPItrampoline
	# MPITRAMPOLINE_LIB: /usr/local/lib/libmpiwrapper.so

	# steps:
	# - name: Checkout
	# uses: actions/checkout@v4

	# - name: Set MPITRAMPOLINE_MPIEXEC
	# run: echo "MPITRAMPOLINE_MPIEXEC=$(which mpiexec)" >> "${GITHUB_ENV}"

	# - name: Build MPIwrapper
	# run: \|
	# apt-get update
	# apt-get install -y wget cmake gcc g++ gfortran python3
	# wget https://github.com/eschnett/MPIwrapper/archive/refs/tags/v${MPIWrapper}.tar.gz
	# tar xzf v${MPIWrapper}.tar.gz
	# cd MPIwrapper-*
	# cmake \
	# -DMPIEXEC_EXECUTABLE=mpiexec \
	# -DCMAKE_BUILD_TYPE=Debug \
	# -DCMAKE_INSTALL_PREFIX=/usr/local \
	# .
	# cmake --build .
	# cmake --install .
	# env:
	# MPIWrapper: ${{matrix.MPIWrapper}}

	# - uses: julia-actions/setup-julia@v1
	# with:
	# version: ${{ matrix.julia_version }}

	# - uses: julia-actions/cache@v2

	# - name: add MPIPreferences
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")

	# - name: use MPItrampoline_jll
	# shell: julia --color=yes --project=test {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")
	# using MPIPreferences
	# MPIPreferences.use_jll_binary("MPItrampoline_jll", export_prefs=true)
	# rm("test/Manifest.toml")

	# - uses: julia-actions/julia-runtest@v1


	# test-spack-mvapich:
	# timeout-minutes: 20
	# strategy:
	# matrix:
	# include:
	# - container: ghcr.io/juliaparallel/github-actions-buildcache:mvapich2-jq
	# name: "MVAPICH 2.3.7"
	# - container: ghcr.io/juliaparallel/github-actions-buildcache:mvapich3-jq
	# name: "MVAPICH 3.0"

	# fail-fast: false

	# runs-on: ubuntu-22.04
	# container: ${{ matrix.container }}
	# name: "Test ${{ matrix.name }}"

	# env:
	# JULIA_MPI_TEST_BINARY: system
	# JULIA_MPI_TEST_EXCLUDE: test_spawn.jl
	# MV2_SMP_USE_CMA: 0
	# # Work around issue with affinity not set. Ref:
	# # https://github.com/JuliaParallel/MPI.jl/pull/810#issuecomment-1920255386
	# MVP_ENABLE_AFFINITY: 0

	# steps:
	# - name: Checkout
	# uses: actions/checkout@v4

	# - uses: julia-actions/setup-julia@v1
	# with:
	# version: "1"

	# - uses: julia-actions/cache@v2
	# - name: add MPIPreferences
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")
	# Pkg.precompile()

	# - name: use system MPI
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using MPIPreferences
	# MPIPreferences.use_system_binary()

	# - uses: julia-actions/julia-runtest@v1


	# # TODO: Can remove this once we can use OpenMPI_jll v5
	# test-spack-openmpi5:
	# timeout-minutes: 20
	# strategy:
	# matrix:
	# include:
	# - container: ghcr.io/juliaparallel/github-actions-buildcache:openmpi5-jq
	# name: "OpenMPI 5.0.2"

	# fail-fast: false

	# runs-on: ubuntu-22.04
	# container: ${{ matrix.container }}
	# name: "Test ${{ matrix.name }}"

	# env:
	# JULIA_MPI_TEST_BINARY: system
	# JULIA_MPI_TEST_ABI: OpenMPI
	# # Allow running as root
	# OMPI_ALLOW_RUN_AS_ROOT: 1
	# OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
	# # Allow oversubscription
	# PRTE_MCA_rmaps_default_mapping_policy: :oversubscribe

	# steps:
	# - name: Checkout
	# uses: actions/checkout@v4

	# - uses: julia-actions/setup-julia@v1
	# with:
	# version: "1"

	# - uses: julia-actions/cache@v2
	# - name: add MPIPreferences
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using Pkg
	# Pkg.develop(path="lib/MPIPreferences")
	# Pkg.precompile()

	# - name: use system MPI
	# shell: julia --color=yes --project=. {0}
	# run: \|
	# using MPIPreferences
	# MPIPreferences.use_system_binary()

	# - uses: julia-actions/julia-runtest@v1

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Fix autogenerated links to OpenMPI docs #1360

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Fix autogenerated links to OpenMPI docs #1360

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