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removed packages that became MDAKits #406

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Oct 23, 2024
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removed packages that became MDAKits #406

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8 changes: 1 addition & 7 deletions pages/mdakits.md
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Expand Up @@ -25,8 +25,7 @@ or share it on [{{ site.mailinglists.discussion.name }}]({{ site.mailinglists.di

## Other (non-MDAKit registered) tools using MDAnalysis

Below we list projects that use MDAnalysis and are not registered as MDAKits:

Below we list projects that use MDAnalysis and are not (yet) registered as MDAKits:

### Visualization tools

Expand All @@ -44,9 +43,6 @@ Below we list projects that use MDAnalysis and are not registered as MDAKits:

- [pydiffusion](https://github.com/bio-phys/pydiffusion): Analyze the
rotational diffusion of your molecules.
- [pytim](https://marcello-sega.github.io/pytim/): Pytim is a package based on
MDAnalysis for the identification and analysis of surface molecules in
configuration files or in trajectories from molecular dynamics simulations.
- [pycontact](https://github.com/maxscheurer/pycontact): Analysis of
non-covalent interactions in MD trajectories.
- [RotamerConvolveMD](https://github.com/MDAnalysis/RotamerConvolveMD):
Expand All @@ -65,8 +61,6 @@ Below we list projects that use MDAnalysis and are not registered as MDAKits:
- [PyInteraph](https://github.com/ELELAB/pyinteraph): A software tool
for the analysis of structural communication in protein ensembles,
including a PyMOL plugin and an InteractionPlotter.
- [MAICoS](https://gitlab.com/maicos-devel/maicos): Analyze molecular dynamics simulations of
interfacial and confined systems.
- [taurenmd](https://taurenmd.readthedocs.io/en/latest/): A command-line interface for analysis of Molecular Dynamics simulations.
- [PENSA](https://github.com/drorlab/pensa): A toolkit for exploratory analysis and comparison of protein structural ensembles
- [LiPyphilic](https://lipyphilic.readthedocs.io/en/latest/): A Python package for the analysis of lipid membrane simulations.
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