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refactor MetcalfScoring methods#254

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CunliangGeng merged 18 commits intodevNPLinker/nplinker:devfrom refactor_MetcalfScoring_methodsNPLinker/nplinker:refactor_MetcalfScoring_methodsCopy head branch name to clipboardJun 14, 2024

+268-725

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Commits on Jun 13, 2024

• update abc.py to change npl to class attribute

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  646ce00

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• remove calc_score method

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• update setup to use cls.npl

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• rename objtype to type

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• change the format of raw score data frame

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• Update get_links to use new format of dataframe

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• Update metcalf_scoring.py

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• change LINK_TYPES to enum LinkType

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• update _get_links

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• add type variable ObjectType

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• change obj_type from a string value to actual data type

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  1fbcfe1

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• remove unused function

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• clean get_links

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• update docstrings for class attributes

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• use hashable object itself as index or column of dataframe

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• update the code for calculating standardised score

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• update unit tests

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Commits on Jun 14, 2024

• Apply suggestions from code review

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  CunliangGeng

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  gcroci2

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