RDRP-1068_python_311_errors

[Ryan2Y79]

Pull Request submission

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Code

• Code runs The code runs on my machine and/or CDSW
• Conflicts resolved There are no conflicts (I have performed a rebase if necessary)
• Requirements My/our code functions according to the requirements of the ticket
• Dependencies I have updated the environment yaml so it includes any new libraries I have used
• Configuration file updated any high level parameters that the user may interact with have been put into the config file (and imported to the script)
• Clean Code
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Testing

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Peer Review Section

• All requirements install from (updated) requirements.txt
• Documentation has been created and is clear - check the working document
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• Unit tests pass, or if not present a new ticket to create tests has been created
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• I recommend merging this request.

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[github-actions]

Detailed Coverage Report

File	Stmts	Miss	Cover	Missing
src
__init__.py	0	0	100%
src/construction
__init__.py	0	0	100%
all_data_construction.py	47	47	0%	1, 3–4, 6, 8, 16, 22, 45–46, 49, 54–55, 59–61, 65–66, 69, 76–78, 83, 86–90, 92, 97–98, 103–104, 107–109, 113, 117–120, 125–126, 128, 133–134, 138, 140
construction_helpers.py	104	14	86%	31–42, 239, 306
construction_main.py	27	27	0%	2–3, 5, 7, 11–12, 15, 18, 54–57, 64, 68–71, 74, 78–81, 84, 89–91, 93
construction_read_validate.py	34	34	0%	2–3, 5, 8, 11, 16, 18, 21, 46–49, 51–52, 55–56, 59, 66–68, 72–73, 79, 82, 101–103, 105–106, 109, 116–117, 122, 129
construction_validation.py	102	9	91%	83, 86, 113, 121–122, 127, 138, 168, 218
postcode_construction.py	21	21	0%	1–2, 4–6, 9, 26, 29, 32, 37, 40–41, 44, 47–49, 51, 55, 59, 62–63
src/estimation
__init__.py	0	0	100%
apply_weights.py	18	2	88%	46–47
calculate_weights.py	52	0	100%
estimation_main.py	22	22	0%	2–4, 6–8, 10, 13, 29, 35, 38, 41–42, 44–51, 53
src/freezing
__init__.py	0	0	100%
freezing_apply_changes.py	70	21	70%	31–34, 37–38, 41–43, 46–49, 53, 61–64, 68–69, 71
freezing_compare.py	68	22	67%	107–108, 156–157, 181, 184, 187–189, 193–195, 197–199, 201–202, 234, 257, 260, 263, 266
freezing_main.py	46	46	0%	1–3, 5, 7–12, 15, 18, 42–43, 46–47, 49–53, 55, 63, 66–68, 71–72, 76–78, 83–84, 86–87, 90–91, 95, 98, 109–112, 114–116
freezing_utils.py	11	0	100%
src/imputation
MoR.py	150	7	95%	57–58, 73, 293, 445, 489–490
__init__.py	0	0	100%
apportionment.py	36	10	72%	124, 126, 141, 143, 145, 157–159, 162, 164
expansion_imputation.py	37	30	18%	23–24, 26–27, 30, 33–35, 39, 42, 44, 47–48, 50, 53, 56, 76–78, 82, 85, 88, 91, 97, 102, 105, 107, 113, 116, 120
imputation_helpers.py	138	56	59%	67, 69, 78, 85, 98–101, 104–105, 107–108, 110–111, 113–114, 116–117, 119–120, 122–123, 125, 134, 136–137, 139–140, 309, 311–312, 316–317, 319, 323, 344, 347, 351, 354–355, 357, 445, 447–448, 451, 463–464, 467–468, 470, 472, 488–489, 492–493, 495
imputation_main.py	75	75	0%	3–6, 8–18, 21, 24, 55, 58, 61, 64–65, 68–69, 72, 74, 79, 82–83, 86, 89–90, 93, 95, 99–100, 104–106, 109, 113–114, 117–118, 121–124, 126, 130, 133–134, 136–140, 142, 144–146, 148–150, 152–153, 156, 159, 162–167, 169
impute_civ_def.py	99	47	52%	165, 168, 198, 200–201, 204–205, 208–210, 215–216, 218, 221, 223–226, 228, 230, 235–236, 238, 241, 243–245, 248, 250–251, 253–254, 256–257, 270, 273–277, 279–280, 283–284, 286–287, 289
manual_imputation.py	19	19	0%	1–2, 4, 6, 9–10, 28–29, 33, 35, 37, 44, 59, 61–62, 64–65, 67–68
sf_expansion.py	74	61	17%	24, 27, 30–31, 34–35, 38, 41, 44–45, 48, 50, 57–58, 61, 66–67, 70, 72, 75–76, 78, 80, 83, 87, 89, 100, 103, 107, 109–110, 112, 114, 117, 120, 129, 132, 135, 144, 147, 149, 155, 161, 173, 176, 181–182, 184, 192–193, 196, 200, 204, 207, 215, 222–223, 226, 228, 232, 234
short_to_long.py	21	21	0%	1, 3–4, 7, 20, 23, 25, 32–33, 35, 37–38, 40–41, 43–45, 47, 49, 53, 55
tmi_imputation.py	181	127	29%	28–29, 57, 59, 65–67, 71, 77, 80, 82, 87, 92, 97, 218, 221, 223, 226, 230, 234, 256–257, 260, 263–264, 267, 270–271, 274, 276–277, 279, 281, 284–285, 287, 289, 292, 295–296, 298, 301–303, 305–308, 310, 326, 328, 335, 337–338, 340–341, 343, 345, 347, 349, 352, 355–356, 359, 361, 363, 381–382, 384, 386–387, 389–391, 393–394, 397, 399–400, 403, 405–406, 424, 426, 429–431, 433, 435–436, 438–439, 442, 444–445, 448, 450, 452–453, 473, 477, 480–481, 484–485, 488, 491, 493, 498, 500, 505, 507, 514–515, 520, 527–528, 530, 533–534, 536, 539, 541, 543, 548, 550–551
src/mapping
__init__.py	0	0	100%
cellno_mapping.py	17	4	76%	49–51, 53
itl_mapping.py	10	0	100%
mapping_helpers.py	55	5	90%	24–27, 69
mapping_main.py	49	49	0%	3–5, 7–15, 17, 20, 45, 50, 59, 68, 75, 78, 85, 88–90, 97, 99, 102–104, 107, 109–111, 114, 117, 122–123, 126, 128–132, 134–136, 139, 142, 145
pg_conversion.py	40	8	80%	52, 55, 58, 122, 125, 128, 162–163
pnp_mapping.py	24	24	0%	1–2, 5, 8, 17–19, 21, 24, 27, 38–40, 42, 46, 49, 57, 73, 75, 78, 89–91, 93
ultfoc_mapping.py	34	4	88%	49–51, 95
src/northern_ireland
__init__.py	0	0	100%
ni_headcount_fte.py	29	29	0%	2–4, 6, 8, 11, 25, 27, 29, 31, 33, 35, 37, 40, 55, 57–59, 61, 63–64, 66–67, 69, 72, 81, 83–84, 86
ni_main.py	21	21	0%	3–9, 11, 14, 34, 37–39, 45, 52–54, 62, 64–65, 67
ni_staging.py	33	33	0%	3–6, 8–9, 11, 14, 22, 25, 27–29, 31, 34, 40, 44, 46, 49, 78–79, 82, 87, 91, 94, 97–102, 104, 106
src/outlier_detection
__init__.py	0	0	100%
auto_outliers.py	90	0	100%
manual_outliers.py	16	0	100%
outlier_main.py	39	39	0%	2–4, 6–8, 10, 13, 42, 44–46, 48–49, 52, 55, 58–63, 65, 70–71, 74, 79–82, 85–89, 91, 94, 96, 98
src/outputs
__init__.py	0	0	100%
export_files.py	92	92	0%	5–11, 13–14, 18, 24, 42, 44, 51–54, 61, 68, 73, 76, 103, 109, 112, 119, 121, 124, 130, 132–133, 136–140, 143–144, 147, 158–160, 162, 165, 178, 180–181, 183, 186, 206, 209, 212–213, 220, 224, 227–229, 232, 234, 236, 238–239, 241, 244–248, 250–251, 253, 256–258, 261, 264, 267, 282, 285–286, 294, 297, 299, 301, 311, 313–315, 324, 326, 329–330
form_output_prep.py	18	13	27%	25–27, 29–30, 34, 36–37, 39, 41, 43, 47, 49
frozen_group.py	43	43	0%	3–4, 6, 8–11, 13, 16, 45, 47–50, 53, 71, 123, 134, 161, 164–168, 170, 172, 175, 178–179, 181, 184, 187, 192–193, 196–197, 200, 203–205, 208–209, 211
gb_sas.py	23	23	0%	2–4, 6–9, 11, 14, 30, 33, 38, 41, 44, 47, 52, 55, 58–60, 63–64, 66
intram_by_civil_defence.py	21	0	100%
intram_by_itl.py	54	15	72%	44–47, 51, 141, 144, 147–149, 152–153, 157–158, 167
intram_by_pg.py	35	0	100%
intram_by_sic.py	33	33	0%	2–5, 7, 10, 30–31, 34–35, 38–39, 41, 44–46, 51, 67–71, 73, 76, 79, 82, 85, 88–89, 92–93, 96, 98
intram_totals.py	14	14	0%	3–4, 6–7, 9, 12, 29–30, 33, 36, 39–40, 42–43
long_form.py	17	17	0%	2–4, 6–9, 11, 14, 29, 32, 35, 38–40, 42–43
manifest_output.py	82	82	0%	1–5, 9, 12–13, 16, 34, 50–53, 56–57, 61–62, 67–68, 76, 79–83, 86–92, 94, 112–113, 118, 120–121, 126, 129, 131, 133, 135, 139, 149, 154–155, 161, 164–165, 167–168, 174–177, 183–185, 187, 194, 196, 201, 203–205, 207–208, 210–211, 213–216, 218, 221, 223, 229–230, 233–234
map_output_cols.py	38	7	81%	150–151, 153, 155, 158, 161, 163
ni_sas.py	19	19	0%	2–8, 10, 13, 26, 29, 32, 35, 40, 43–45, 48–49
outputs_helpers.py	17	0	100%
outputs_main.py	83	83	0%	3–4, 7, 10–22, 24, 27, 49, 54–56, 61, 64, 67–69, 74, 77–78, 81–83, 89, 92–94, 100, 103–105, 107–108, 113, 116–118, 127, 130–132, 136–137, 146, 149–151, 158, 161–163, 167–168, 176, 179–181, 188, 191–193, 198, 201–203, 210, 213–215, 217–219, 221
short_form.py	34	13	61%	78, 85, 87, 104, 107, 110, 113, 116, 119–121, 123–124
tau.py	25	25	0%	2–8, 10, 13, 30, 34, 37, 40, 43, 46, 51, 54, 56–57, 60–62, 65–66, 68
total_fte.py	12	12	0%	2–5, 8, 11, 26, 28–29, 35, 40–41
src/site_apportionment
__init__.py	0	0	100%
output_status_filtered.py	26	15	42%	25, 27, 31–32, 34–35, 37, 44–45, 72, 75, 77, 79–80, 82
site_apportionment.py	126	3	97%	467, 469–470
site_apportionment_main.py	25	25	0%	3–5, 7–8, 12, 14, 17, 39–40, 43, 45, 48–49, 57–58, 60–61, 64, 69–72, 74–75
src/staging
__init__.py	0	0	100%
postcode_validation.py	56	3	94%	131–132, 220
spp_parser.py	14	0	100%
spp_snapshot_processing.py	34	0	100%
staging_helpers.py	86	15	82%	173, 176, 178, 181–182, 185–186, 188–189, 192, 196–197, 199, 203, 209
staging_main.py	98	98	0%	3–5, 7, 9–11, 15, 18, 64–66, 69, 71, 75–77, 79–80, 84, 86–87, 90, 93, 96–97, 99–100, 105–107, 111–114, 116–117, 123, 128–130, 132–133, 136, 148–150, 155, 158, 162, 164, 166–168, 171, 175, 177, 179–183, 186, 189, 191–192, 195, 197, 200–204, 207, 211–212, 215–219, 221, 224, 232, 241–242, 244–249, 251, 253–254, 256, 259, 270
validation.py	144	50	65%	34–36, 39, 42, 88–89, 100, 122, 135–136, 141, 145, 153–154, 160–162, 201–202, 208, 210, 213, 215, 222–223, 302, 304–305, 308–309, 312–313, 316, 319–320, 323, 325, 327–328, 342, 344–350, 353, 356
src/utils
__init__.py	0	0	100%
breakdown_validation.py	130	45	65%	29, 186–188, 190–194, 196, 198, 201–202, 208–209, 212, 215, 217, 220, 222, 234–237, 240–243, 259–260, 265, 308–309, 311, 317–318, 360–363, 365–368, 371
config.py	149	2	98%	152–153
defence.py	20	0	100%
helpers.py	73	18	75%	19–20, 24–25, 27, 134–137, 139–140, 143–145, 154, 156–157, 215
local_file_mods.py	120	47	60%	47–53, 98, 148–150, 199–203, 214–215, 226, 237, 248–249, 251, 262–263, 274–275, 284, 292, 303, 305–306, 308–309, 313–315, 319, 333–334, 336–337, 340–341, 343, 360, 365
path_helpers.py	142	8	94%	96, 311, 313, 315–316, 318–319, 321
postcode_reduction_helper.py	38	38	0%	11, 13–14, 16, 19, 21, 24, 26–27, 29–30, 33–34, 37, 39–40, 42–43, 46, 59, 61, 64, 67, 70–71, 73–74, 76, 79, 94, 96, 99–100, 103–104, 106, 108–109
s3_mods.py	127	127	0%	19–20, 22–23, 25, 33, 38–40, 44, 58, 60–61, 64–67, 69–70, 73, 84, 87, 92, 95–96, 99, 110–111, 113, 116, 130, 132–133, 135, 138, 148, 155, 158, 160, 163, 165, 168, 179–180, 182, 185, 193–194, 197, 206–211, 214, 225–226, 229–230, 233, 236, 239, 250–251, 253–256, 258–259, 262, 268, 271, 284, 287, 290, 292, 295, 301, 304, 307–308, 311, 319–321, 323, 326, 330–331, 333, 336, 365, 369, 371, 378, 381, 386–388, 395, 398, 413, 415–416, 418–419, 423, 425, 427, 430, 432–434, 436, 439, 449, 452–453, 456, 459, 461–462, 464–466
singleton_boto.py	20	20	0%	4–5, 8–10, 12–13, 15–22, 24–28
TOTAL	3997	1939	51%

Summary of tests

Tests	Skipped	Failures	Errors	Time
265	2 💤	0 ❌	0 🔥	3.239s ⏱️

[Ryan2Y79]

The reason for this change is that unlike BERD backdata, PNP backdata contains columns with only nan values. When the original line 159 would run it would throw an error because of this. Line 159 now checks if the column does not only contain nan values, and if so executes line 160 as normal.

[AnneONS]

looks like a really good solution- thank you.

[AnneONS]

good that you found the cause of the issue and gave us a solution, thank you.