Issues

• Skip resampling when --output-resolution matches input resolution

  PennLINC/qsirecon#403 · Filter by author tsalo opened on Sep 14, 2026

• Replace recon_plot with trxviz

  enhancement
  PennLINC/qsirecon#397 · Filter by author tsalo opened on Aug 6, 2026

• No map files found in qsi_recon_26_wf

  bug
  PennLINC/qsirecon#393 · Filter by author pollaro opened on Jul 23, 2026
  1

• AMICO NODDI failure with NaN/Inf can be caused by overinclusive preprocessing mask (likely upstream in qsiprep)

  bug
  PennLINC/qsirecon#392 · Filter by author arovai opened on Jul 17, 2026

• Drop recon-spec-aux-files and just use paths in config

  breaking-change
  PennLINC/qsirecon#390 · Filter by author tsalo opened on Jul 15, 2026

• DSI Studio AutoTrack cannot currently output tt.gz files

  bug
  PennLINC/qsirecon#389 · Filter by author araikes opened on Jul 14, 2026
  2

• DSI Studio Tract2Region

  enhancement
  PennLINC/qsirecon#388 · Filter by author araikes opened on Jul 14, 2026

• BIDS-noncompliant derivative in DSIStudio outputs

  bug
  PennLINC/qsirecon#387 · Filter by author tsalo opened on Jul 13, 2026

• Dipy 3dshore connectivity matrix calculation node

  bug
  PennLINC/qsirecon#384 · Filter by author mkpsy opened on Jul 1, 2026

• DSI Studio Tractography boilerplate is sparse

  documentation
  PennLINC/qsirecon#356 · Filter by author araikes opened on Feb 19, 2026

• Atlases option in config file does not work

  bug
  PennLINC/qsirecon#341 · Filter by author lucile-hashimoto opened on Dec 9, 2025
  2

• Create estimate/apply variants of relevant recon specs

  enhancement
  PennLINC/qsirecon#338 · Filter by author tsalo opened on Dec 2, 2025

• Document response function ingression functionality

  documentation
  PennLINC/qsirecon#337 · Filter by author tsalo opened on Dec 2, 2025

• Mismatch between overlays and underlays in scalar plots

  bug
  PennLINC/qsirecon#333 · Filter by author tsalo opened on Nov 25, 2025

• Add information about recon specs, actions, and interfaces to model pages

  documentation
  PennLINC/qsirecon#328 · Filter by author tsalo opened on Nov 24, 2025
  1

• Clarify that QSIRecon warps scalar maps to cropped version of MNI template

  documentation
  PennLINC/qsirecon#322 · Filter by author tsalo opened on Nov 20, 2025

• Add ability to sort ConditionalDocs by a position argument

  enhancement
  PennLINC/qsirecon#305 · Filter by author mattcieslak opened on Nov 7, 2025
  1

• Getting info from the terminal stdout to get metadata

  enhancement
  PennLINC/qsirecon#304 · Filter by author mattcieslak opened on Nov 7, 2025

• Add CI job to check links

  maintenancetesting
  PennLINC/qsirecon#300 · Filter by author tsalo opened on Nov 6, 2025

• TORTOISE recon spec doesn't accept methods other than WLLS

  bug
  PennLINC/qsirecon#294 · Filter by author araikes opened on Nov 6, 2025

• Adding metadata to scalar outputs

  PennLINC/qsirecon#288 · Filter by author mattcieslak opened on Nov 5, 2025

• Clarification on streamline coordinate orientation (RAS vs LPS)

  bug
  PennLINC/qsirecon#283 · Filter by author Silflame opened on Nov 4, 2025

• Account for missing parcels in connectivity matrices

  enhancement
  PennLINC/qsirecon#280 · Filter by author tsalo opened on Oct 29, 2025

• MRtrix3_act-FAST creates too small connectivity plots in .html files

  bug
  PennLINC/qsirecon#276 · Filter by author JohannesWiesner opened on Oct 27, 2025
  4

• Add DEC outputs for tensor fits

  enhancement
  PennLINC/qsirecon#273 · Filter by author mattcieslak opened on Oct 16, 2025