Skip to content

v0.3.0

Compare
Choose a tag to compare
@ids-bioinformatics ids-bioinformatics released this 11 Sep 15:05
2e0894e

0.3.0 (2023-09-11)

Features

  • add split_attributes as a keyword to the GffDataFrame class and read_gff() function to either split or not split the attributes column based on user input (51ea186)
  • expose most of the gff handling functions as direct python calls (fe6a19f)
  • expose the read_fasta() function for direct python calls (b4de7a9)

Bug Fixes

  • change file writing to append mode so records won't get overwritten in writer.py (e5f0b0a)
  • do not interpret default NA values from strings in pd.read_csv() (83f821e)
  • lift the _split_attribute_colums() function out of the GffDataFrame class so it can be used without the GffDataFrame object (6308ee1)
  • solve incorrect file extension when a file is presented with multiple dots (c349ced)

Dependencies

  • add lenient versions to conda environment file and setup.py (6ccd2c7)

Documentation

  • improve the docstrings of several functions in reader.py (36ab67c)
  • update docstring for read_gff() function (51ea186)
  • update readme to be more up-to-date regarding some of the newer functionalities (e305ecb)