refactor: amplicon_covs.py #109
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…ely re-wrote the script from scratch refactor: ViroConstrictor.workflow.scripts.amplicon_arg_parser.py - moved argument parsing logic from amplicon_covs to a different file refactor: ViroConstrictor.workflow.scripts.__init__.py - added to import the argument parser to amplicon_covs.py
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refactor: ViroConstrictor.workflow.scripts.amplicon_covs.py - completely re-wrote the script from scratch
refactor: ViroConstrictor.workflow.scripts.amplicon_arg_parser.py - moved argument parsing logic from amplicon_covs to a different file
refactor: ViroConstrictor.workflow.scripts.init.py - added to import the argument parser to amplicon_covs.py