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Add filter for variants not supported by both strands #7

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merged 6 commits into from
Jan 25, 2024
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@boasvdp boasvdp commented Jan 25, 2024

Variants which do not have at least 1 FW and 1 RV read supporting it, will be marked as filtered because of strict_strand. This is a low priority filter, with priorities from high to low:

  1. masked_region
  2. min_depth_10
  3. min_af_0.8
  4. FilterMutectCalls filters (position, weak_evidence, base_qual and strict_strand)

@boasvdp boasvdp merged commit c43bfa7 into main Jan 25, 2024
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@boasvdp boasvdp deleted the add_filter branch January 25, 2024 15:32
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